FFCP PHASE1:Hg19::chrX:50386648..50386697,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=57477 | |EntrezGene=entrezgene:57477 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=29215 | |HGNC=HGNC:29215 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000460112,uc004dpf.1_5end | |association_with_transcript=0bp_to_ENST00000460112,uc004dpf.1_5end | ||
|cluster_id=chrX:50386648..50386697,- | |||
|coexpression_cluster_id=C2447 | |coexpression_cluster_id=C2447 | ||
|description=CAGE_peak_2_at_SHROOM4_5end | |description=CAGE_peak_2_at_SHROOM4_5end |
Revision as of 08:43, 1 August 2015
Short description: | p2@SHROOM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SHROOM4_5end |
Coexpression cluster: | C2447_Renal_lung_Endothelial_adipose_heart_Hepatic_mature |
Association with transcript: | 0bp_to_ENST00000460112, uc004dpf.1_5end |
EntrezGene: | 57477 |
HGNC: | 29215 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p2@SHROOM4 |
---|
0
10
20
30
40
50
60
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 6.55e-32 | 24 |
endothelial cell | 4.20e-31 | 36 |
blood vessel endothelial cell | 8.39e-24 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.39e-24 | 18 |
meso-epithelial cell | 1.38e-22 | 45 |
lining cell | 4.11e-15 | 58 |
barrier cell | 4.11e-15 | 58 |
endothelial cell of artery | 7.12e-13 | 9 |
lymphangioblast | 1.20e-09 | 6 |
endothelial cell of lymphatic vessel | 1.20e-09 | 6 |
Showing 1 to 10 of 13 entries
Ontology term | p-value | n |
---|---|---|
adult organism | 5.99e-69 | 114 |
anatomical conduit | 2.71e-29 | 240 |
neural tube | 2.84e-28 | 56 |
neural rod | 2.84e-28 | 56 |
future spinal cord | 2.84e-28 | 56 |
neural keel | 2.84e-28 | 56 |
tube | 3.30e-26 | 192 |
regional part of nervous system | 4.13e-26 | 53 |
regional part of brain | 4.13e-26 | 53 |
blood vessel endothelium | 8.39e-24 | 18 |
Showing 1 to 10 of 85 entries