FFCP PHASE1:Mm9::chr2:153355677..153355721,-: Difference between revisions
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{{FFCP|EntrezGene=329540|HGNC=|UniProt=Q3UH85,Q52KQ8|association_with_transcript=0bp_to_ENSMUST00000035346,NM_001134300,uc008nhv.2_5end|description=CAGE_peak_4_at_8430427H17Rik_5end|id=chr2:153355677..153355721,-|ontology_enrichment_celltype=CL:0000540!1.30e-12!33;CL:0000047!1.30e-12!33;CL:0000031!1.30e-12!33;CL:0000404!1.30e-12!33;CL:0000393!6.44e-09!39;CL:0000211!6.44e-09!39;CL:0000117!1.45e-08!23;CL:0000337!1.45e-08!23;CL:0000221!1.46e-07!44;CL:0000133!1.46e-07!44;CL:0002319!1.48e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,1.62e-14,33;CL:0000047,1.62e-14,33;CL:0000031,1.62e-14,33;CL:0000404,1.62e-14,33;CL:0000393,3.06e-10,39;CL:0000211,3.06e-10,39;CL:0000117,1.06e-09,23;CL:0000337,1.06e-09,23;CL:0000221,2.28e-09,44;CL:0000133,2.28e-09,44;CL:0002319,2.29e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.70e-23!73;UBERON:0005743!1.70e-23!73;UBERON:0000073!8.16e-22!75;UBERON:0001016!8.16e-22!75;UBERON:0002346!1.14e-20!71;UBERON:0003075!1.14e-20!71;UBERON:0007284!1.14e-20!71;UBERON:0004121!1.06e-18!102;UBERON:0000924!1.06e-18!102;UBERON:0006601!1.06e-18!102;UBERON:0001049!8.66e-17!52;UBERON:0005068!8.66e-17!52;UBERON:0006241!8.66e-17!52;UBERON:0007135!8.66e-17!52;UBERON:0000033!8.25e-16!63;UBERON:0000955!1.35e-15!50;UBERON:0006238!1.35e-15!50;UBERON:0002616!5.42e-15!49;UBERON:0003056!8.40e-15!49;UBERON:0003080!1.61e-13!40;UBERON:0002780!5.05e-13!39;UBERON:0001890!5.05e-13!39;UBERON:0006240!5.05e-13!39;UBERON:0002020!2.13e-12!34;UBERON:0002791!8.79e-10!29;UBERON:0003528!8.79e-10!29;UBERON:0001893!8.79e-10!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.16e-28,73;UBERON:0001016,1.13e-26,75;UBERON:0002346,2.22e-22,64;UBERON:0003075,2.22e-22,64;UBERON:0007284,2.22e-22,64;UBERON:0004121,1.19e-21,95;UBERON:0000924,1.19e-21,95;UBERON:0006601,1.19e-21,95;UBERON:0000073,4.55e-21,54;UBERON:0001049,6.71e-20,52;UBERON:0005068,6.71e-20,52;UBERON:0006241,6.71e-20,52;UBERON:0007135,6.71e-20,52;UBERON:0010371,9.28e-18,73;UBERON:0000955,5.55e-17,47;UBERON:0006238,5.55e-17,47;UBERON:0010314,2.63e-16,92;UBERON:0002616,2.83e-16,46;UBERON:0003056,5.24e-16,49;UBERON:0003080,3.04e-15,40;UBERON:0002780,1.18e-14,39;UBERON:0001890,1.18e-14,39;UBERON:0006240,1.18e-14,39;UBERON:0002020,6.88e-14,34;UBERON:0003528,8.31e-11,29;UBERON:0002791,8.31e-11,29;UBERON:0001893,8.31e-11,29;UBERON:0002021,1.32e-07,10;UBERON:0000411,1.32e-07,10;UBERON:0001950,1.32e-07,10;UBERON:0000956,5.66e-07,21;UBERON:0001869,5.66e-07,21;UBERON:0000203,5.66e-07,21|phase1_expression=1.12104192973356,0,0,0,0,0,0,0.903863264091034,0.84473233291,0.234064526321993,0.171217968225505,0,0,0.0874204024189974,0,0.607425802169478,0,0.157731082679119,0.137114433605739,0,1.36069264241712,2.18440092641948,1.56719873483361,0,0.22940928106717,0,0,0,0.190023419456374,0,0,5.71527606113668,6.76571266343027,0,0,0,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0,0,0,0.659058548203415,0.194429899074283,0.279972843250725,0,0,0,0.336093799142464,0.514518872071894,0,0.515672092277442,3.64169629547276,7.40587370980846,1.90149421051854,1.0165335962074,0,1.3498495759221,1.97773272513395,0.7104801149461,1.79760066311043,1.15265491596466,2.28117147078651,0.945041568321835,2.52389953621658,3.14216082844184,3.75476519617743,1.71487118900936,1.34183659425531,0,2.20231761998777,3.95830748064082,3.07213066512487,7.64940468835124,4.84884511092771,5.2091337055676,2.51264699101243,2.25105044012672,3.66715794664344,7.07108605136802,3.84403538157578,5.03278503728312,0.151452386666368,0,0.579728977403356,0,0,0,0.649776417447669,0,0.280888840263504,0,0,0,1.12674735821344,0,0,0,0,0,0,0.11418387971906,0.258937883647172,2.67195850316685,1.73485326766136,2.13125834818499,0.691846491768175,1.20578112442098,1.88141931417128,1.75933227861546,0.247194967734374,0.289198713839823,1.76922110389975,0.323533699894818,0.441683036920787,0.484875253135222,0,7.31951992528868,8.58731497935166,0.255457055208591,0.479260498023681,1.19980546198682,0.381210681219194,3.74476598512057,1.37250180845588,3.76963056338593,5.21472960576829,4.34716277461562,4.1557608911912,3.0825839982874,1.2220723662038,1.11966273549084,6.57079171927554,0.841767423545896,0.520481771850815,1.60931473103431,1.62055916824814,2.71268672104287,2.31324097114515,3.33095672740609,3.65436725782942,1.29351685369508,0,0.189106080167819,0,0.657587197282725,0.278047249225598,0.696504333044333,0,2.38841120182192,0,0.257347907114715,0.568326998791185,2.27838349789052,2.34526059981096,1.2604344302271,0.946978942340841,0.393528463494808,1.23413690309903,0.465067889500816,0.804820204198858,0.583826711835847,1.31647879930784,0.32833492815819,0.162137619091711,0.292399974850665,0.219550115291051,0.134206418760372,3.99550902271842,6.48299057989492,0,0,1.06644125267617,0.928946687441754,2.31961430379768,2.8235693447268,2.2237804384487,1.71203063501303,0.474529061544512,1.4822905925161,1.00534083520108,0.397912944082302,1.16978452271472,0.898819408654221,0.216138049874694,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:329540 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UH85,uniprot:Q52KQ8 | |||
|association_with_transcript=0bp_to_ENSMUST00000035346,NM_001134300,uc008nhv.2_5end | |||
|cluster_id=chr2:153355677..153355721,- | |||
|description=CAGE_peak_4_at_8430427H17Rik_5end | |||
|id=chr2:153355677..153355721,- | |||
|ontology_enrichment_celltype=CL:0000540!1.30e-12!33;CL:0000047!1.30e-12!33;CL:0000031!1.30e-12!33;CL:0000404!1.30e-12!33;CL:0000393!6.44e-09!39;CL:0000211!6.44e-09!39;CL:0000117!1.45e-08!23;CL:0000337!1.45e-08!23;CL:0000221!1.46e-07!44;CL:0000133!1.46e-07!44;CL:0002319!1.48e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.62e-14,33;CL:0000047,1.62e-14,33;CL:0000031,1.62e-14,33;CL:0000404,1.62e-14,33;CL:0000393,3.06e-10,39;CL:0000211,3.06e-10,39;CL:0000117,1.06e-09,23;CL:0000337,1.06e-09,23;CL:0000221,2.28e-09,44;CL:0000133,2.28e-09,44;CL:0002319,2.29e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.70e-23!73;UBERON:0005743!1.70e-23!73;UBERON:0000073!8.16e-22!75;UBERON:0001016!8.16e-22!75;UBERON:0002346!1.14e-20!71;UBERON:0003075!1.14e-20!71;UBERON:0007284!1.14e-20!71;UBERON:0004121!1.06e-18!102;UBERON:0000924!1.06e-18!102;UBERON:0006601!1.06e-18!102;UBERON:0001049!8.66e-17!52;UBERON:0005068!8.66e-17!52;UBERON:0006241!8.66e-17!52;UBERON:0007135!8.66e-17!52;UBERON:0000033!8.25e-16!63;UBERON:0000955!1.35e-15!50;UBERON:0006238!1.35e-15!50;UBERON:0002616!5.42e-15!49;UBERON:0003056!8.40e-15!49;UBERON:0003080!1.61e-13!40;UBERON:0002780!5.05e-13!39;UBERON:0001890!5.05e-13!39;UBERON:0006240!5.05e-13!39;UBERON:0002020!2.13e-12!34;UBERON:0002791!8.79e-10!29;UBERON:0003528!8.79e-10!29;UBERON:0001893!8.79e-10!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.16e-28,73;UBERON:0001016,1.13e-26,75;UBERON:0002346,2.22e-22,64;UBERON:0003075,2.22e-22,64;UBERON:0007284,2.22e-22,64;UBERON:0004121,1.19e-21,95;UBERON:0000924,1.19e-21,95;UBERON:0006601,1.19e-21,95;UBERON:0000073,4.55e-21,54;UBERON:0001049,6.71e-20,52;UBERON:0005068,6.71e-20,52;UBERON:0006241,6.71e-20,52;UBERON:0007135,6.71e-20,52;UBERON:0010371,9.28e-18,73;UBERON:0000955,5.55e-17,47;UBERON:0006238,5.55e-17,47;UBERON:0010314,2.63e-16,92;UBERON:0002616,2.83e-16,46;UBERON:0003056,5.24e-16,49;UBERON:0003080,3.04e-15,40;UBERON:0002780,1.18e-14,39;UBERON:0001890,1.18e-14,39;UBERON:0006240,1.18e-14,39;UBERON:0002020,6.88e-14,34;UBERON:0003528,8.31e-11,29;UBERON:0002791,8.31e-11,29;UBERON:0001893,8.31e-11,29;UBERON:0002021,1.32e-07,10;UBERON:0000411,1.32e-07,10;UBERON:0001950,1.32e-07,10;UBERON:0000956,5.66e-07,21;UBERON:0001869,5.66e-07,21;UBERON:0000203,5.66e-07,21 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0.903863264091034,0.84473233291,0.234064526321993,0.171217968225505,0,0,0.0874204024189974,0,0.607425802169478,0,0.157731082679119,0.137114433605739,0,1.36069264241712,2.18440092641948,1.56719873483361,0,0.22940928106717,0,0,0,0.190023419456374,0,0,5.71527606113668,6.76571266343027,0,0,0,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0,0,0,0.659058548203415,0.194429899074283,0.279972843250725,0,0,0,0.336093799142464,0.514518872071894,0,0.515672092277442,3.64169629547276,7.40587370980846,1.90149421051854,1.0165335962074,0,1.3498495759221,1.97773272513395,0.7104801149461,1.79760066311043,1.15265491596466,2.28117147078651,0.945041568321835,2.52389953621658,3.14216082844184,3.75476519617743,1.71487118900936,1.34183659425531,0,2.20231761998777,3.95830748064082,3.07213066512487,7.64940468835124,4.84884511092771,5.2091337055676,2.51264699101243,2.25105044012672,3.66715794664344,7.07108605136802,3.84403538157578,5.03278503728312,0.151452386666368,0,0.579728977403356,0,0,0,0.649776417447669,0,0.280888840263504,0,0,0,1.12674735821344,0,0,0,0,0,0,0.11418387971906,0.258937883647172,2.67195850316685,1.73485326766136,2.13125834818499,0.691846491768175,1.20578112442098,1.88141931417128,1.75933227861546,0.247194967734374,0.289198713839823,1.76922110389975,0.323533699894818,0.441683036920787,0.484875253135222,0,7.31951992528868,8.58731497935166,0.255457055208591,0.479260498023681,1.19980546198682,0.381210681219194,3.74476598512057,1.37250180845588,3.76963056338593,5.21472960576829,4.34716277461562,4.1557608911912,3.0825839982874,1.2220723662038,1.11966273549084,6.57079171927554,0.841767423545896,0.520481771850815,1.60931473103431,1.62055916824814,2.71268672104287,2.31324097114515,3.33095672740609,3.65436725782942,1.29351685369508,0,0.189106080167819,0,0.657587197282725,0.278047249225598,0.696504333044333,0,2.38841120182192,0,0.257347907114715,0.568326998791185,2.27838349789052,2.34526059981096,1.2604344302271,0.946978942340841,0.393528463494808,1.23413690309903,0.465067889500816,0.804820204198858,0.583826711835847,1.31647879930784,0.32833492815819,0.162137619091711,0.292399974850665,0.219550115291051,0.134206418760372,3.99550902271842,6.48299057989492,0,0,1.06644125267617,0.928946687441754,2.31961430379768,2.8235693447268,2.2237804384487,1.71203063501303,0.474529061544512,1.4822905925161,1.00534083520108,0.397912944082302,1.16978452271472,0.898819408654221,0.216138049874694,0.199141273254367,0.758671603812327,0.342745537829186,0,1.4255592949172,0.775809948670503,0.771494018793504,1.3279672796094,0.738050739898011,0,0.370191491765402,0,2.16898637430922,2.35870794135844,1.12431056192427,1.82574109249653,0.72353147925725,1.52775511068852,1.72617682470486,0.486405680325106,0.823684239564244,0,0.372140947668503,0.936113019343682,0.252578877947112,0,0,0,0.37898282354097,0.325929952884052,0.339490171550376,0.234690248288502,0.335012514883631,0.476087281772027,0,0.472905432318573,0.221464689648775,0.637819074629948,0.491589944147214,0.690739927463582,0.289298117163023,0,1.08781136763742,0,0,3.69266356971921,2.46144541843627,0,0,3.15508219416257,3.51394869866975,2.36965737506079,3.34556317133573,3.11918143715352,5.37845408498782,3.23848561339915,4.38383786866968,4.34816555741176,5.14114106274891,1.27746076687442,0.890328018336276,1.30309567482861,0.824850614862677,0,0.485561272309963,0,0.565815239267694,0.885905678642318,0.307435147943927,2.06742634534577,1.09060118843252,0.712994756769443,0.948110273807448,0,0,10.2131881726136,1.26042765821917,1.03486947026204,1.71469628025274,2.6601035046341,3.21063871683727,2.79733335023606,3.95804433848979,0.469343416127421,0.847328283455281,0,0,0,0.361877549568935,0.119372344003136,0.164140899745061,0,2.22510362412612,0.512612642393558,1.44470807574256,0.740778109478847,0.941842285023455,1.0935538217682,0.228778173206523,0.849892149969277,2.09927178485487,1.10559979043539,0,1.58167996790568,0.609958401380546,1.29606408986162,1.46361807210128,0.655087691238533,0.944050424693745,0.578574190077352,0,0,0.621339313086926,0,3.43888055901151,1.82004339502807,3.11121901350476,2.58319646955462,3.71703476079712,3.87278887530988,3.1249052362548,3.46035836604846,0.483168241652012,0.576060012515731,0.316011120628178,1.01362607645082,0.308132871494482,0.129920822977795,0.179026695667481,0.596044064343795,0.240390899039938,0.443068581523732,0,0.15241361331,0.100826185136841,0.194915761479505,0,0.233753804363138,0,0.221985953374065,0.717710852875806,0.335769232728157,2.70465431645067,1.68914227906064,2.38097111547445,0,0.501572104035363,3.95326289831947,6.90487854760765,4.58316410751517,6.53042092906013,4.7955776383945,1.5107877947794,6.07520250208625,4.05289082901798,4.53142408984205,4.14208249401456,1.24544817101012,0.798049746802062,1.02440163452481,1.70174701947806,2.51535795153579,2.02227859295016,2.00022055021454,0.824140228955577,1.28367683836726,2.27427490587418,1.52087579934144,0.943131706930381,1.77918864192777,1.79270426733634,1.6081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| |||
|short_description=p4@8430427H17Rik | |||
}} |
Revision as of 07:28, 4 August 2015
Short description: | p4@8430427H17Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_8430427H17Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000035346, NM_001134300, uc008nhv.2_5end |
EntrezGene: | 329540 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.62e-14 | 33 |
neuronal stem cell | 1.62e-14 | 33 |
neuroblast | 1.62e-14 | 33 |
electrically signaling cell | 1.62e-14 | 33 |
electrically responsive cell | 3.06e-10 | 39 |
electrically active cell | 3.06e-10 | 39 |
CNS neuron (sensu Vertebrata) | 1.06e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.06e-09 | 23 |
ectodermal cell | 2.28e-09 | 44 |
neurectodermal cell | 2.28e-09 | 44 |
neural cell | 2.29e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.16e-28 | 73 |
nervous system | 1.13e-26 | 75 |
neurectoderm | 2.22e-22 | 64 |
neural plate | 2.22e-22 | 64 |
presumptive neural plate | 2.22e-22 | 64 |
ectoderm-derived structure | 1.19e-21 | 95 |
ectoderm | 1.19e-21 | 95 |
presumptive ectoderm | 1.19e-21 | 95 |
regional part of nervous system | 4.55e-21 | 54 |
neural tube | 6.71e-20 | 52 |
neural rod | 6.71e-20 | 52 |
future spinal cord | 6.71e-20 | 52 |
neural keel | 6.71e-20 | 52 |
ecto-epithelium | 9.28e-18 | 73 |
brain | 5.55e-17 | 47 |
future brain | 5.55e-17 | 47 |
structure with developmental contribution from neural crest | 2.63e-16 | 92 |
regional part of brain | 2.83e-16 | 46 |
pre-chordal neural plate | 5.24e-16 | 49 |
anterior neural tube | 3.04e-15 | 40 |
regional part of forebrain | 1.18e-14 | 39 |
forebrain | 1.18e-14 | 39 |
future forebrain | 1.18e-14 | 39 |
gray matter | 6.88e-14 | 34 |
brain grey matter | 8.31e-11 | 29 |
regional part of telencephalon | 8.31e-11 | 29 |
telencephalon | 8.31e-11 | 29 |
occipital lobe | 1.32e-07 | 10 |
visual cortex | 1.32e-07 | 10 |
neocortex | 1.32e-07 | 10 |
cerebral cortex | 5.66e-07 | 21 |
cerebral hemisphere | 5.66e-07 | 21 |
pallium | 5.66e-07 | 21 |