FFCP PHASE1:Mm9::chr10:59853531..59853548,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr10:59853531..59853548,+ to FFCP PHASE1:Mm9::chr10:59853531..59853548,+: NSchange) |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=36 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr10:59853531..59853548,+ | |||
|description=CAGE_peak_at_chr10:59853531..59853548,+ | |||
|id=chr10:59853531..59853548,+ | |||
|ontology_enrichment_celltype=CL:0000988!6.05e-12!32;CL:0002032!6.05e-12!32;CL:0000037!6.05e-12!32;CL:0000566!6.05e-12!32;CL:0000837!6.05e-12!32;CL:0002031!6.13e-12!25;CL:0000738!4.27e-09!17;CL:0002087!4.27e-09!17;CL:0002320!1.62e-08!46;CL:0000134!1.62e-08!46;CL:0000838!2.93e-07!12;CL:0000219!3.37e-07!54;CL:0000049!8.58e-07!19;CL:0000084!8.77e-07!11;CL:0000827!8.77e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,1.18e-09,25;CL:0000988,4.37e-07,32;CL:0002032,4.37e-07,32;CL:0000037,4.37e-07,32;CL:0000837,4.37e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,1.81e-09,3;DOID:4045,1.81e-09,3 | |||
|ontology_enrichment_uberon=UBERON:0002193!2.33e-28!48;UBERON:0002390!2.51e-25!45;UBERON:0003061!2.51e-25!45;UBERON:0002405!3.40e-17!70;UBERON:0004177!1.02e-14!29;UBERON:0003408!2.96e-13!24;UBERON:0002370!1.31e-12!23;UBERON:0000974!1.31e-12!23;UBERON:0004807!1.31e-12!23;UBERON:0005058!1.31e-12!23;UBERON:0003351!1.31e-12!23;UBERON:0009113!1.31e-12!23;UBERON:0003295!1.31e-12!23;UBERON:0009722!1.31e-12!23;UBERON:0005562!1.31e-12!23;UBERON:0007690!1.31e-12!23;UBERON:0006562!8.89e-12!24;UBERON:0001557!8.89e-12!24;UBERON:0001042!8.89e-12!24;UBERON:0008814!8.89e-12!24;UBERON:0009145!8.89e-12!24;UBERON:0002371!3.43e-11!16;UBERON:0003081!9.44e-10!88;UBERON:0000072!1.12e-09!27;UBERON:0002384!1.62e-08!46;UBERON:0001474!1.14e-07!22;UBERON:0004765!1.14e-07!22;UBERON:0001434!1.14e-07!22;UBERON:0000063!1.52e-07!35;UBERON:0001004!5.91e-07!42;UBERON:0005057!9.93e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.97e-25,48;UBERON:0002405,4.97e-25,48;UBERON:0002390,1.09e-19,45;UBERON:0003061,1.09e-19,45;UBERON:0002370,3.44e-13,23;UBERON:0000974,3.44e-13,23;UBERON:0004807,3.44e-13,23;UBERON:0005058,3.44e-13,23;UBERON:0003351,3.44e-13,23;UBERON:0009113,3.44e-13,23;UBERON:0003295,3.44e-13,23;UBERON:0009722,3.44e-13,23;UBERON:0005562,3.44e-13,23;UBERON:0007690,3.44e-13,23;UBERON:0006562,1.55e-12,24;UBERON:0003408,1.55e-12,24;UBERON:0001557,1.55e-12,24;UBERON:0001042,1.55e-12,24;UBERON:0008814,1.55e-12,24;UBERON:0009145,1.55e-12,24;UBERON:0004177,7.42e-12,29;UBERON:0005057,7.42e-12,29;UBERON:0000072,7.23e-11,27;UBERON:0000077,2.35e-09,35;UBERON:0002465,6.92e-09,3;UBERON:0002371,1.26e-08,16;UBERON:0003081,6.34e-08,87;UBERON:0002204,1.35e-07,32;UBERON:0007811,1.52e-07,36;UBERON:0000926,6.60e-07,120;UBERON:0004120,6.60e-07,120;UBERON:0006603,6.60e-07,120 | |||
|phase1_expression=0,0,0,0,0,0,0,4.77756296733832,0.281577444303333,0.468129052643987,0.856089841127525,0.0797721589953364,2.05440875917447,0.34968160967599,0.999329285446988,1.21485160433896,0.699561878128147,2.36596624018678,1.91960207048034,2.12194825899015,0.0850432901510698,2.08510997521859,1.30599894569468,3.35984087866154,5.50582274561208,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,7.53356935326434,8.5946887897618,9.94695113550217,7.05877785637217,4.78131839470912,10.6812277666854,0,0,0,0,0,0,0,0,0,0.335565212115473,0,1.34437519656986,0,0,0,0,0,0,0,0,4.04954872776629,0.988866362566974,1.4209602298922,0.299600110518405,0.768436610643109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227178579999552,0.226714680320357,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.45673551887624,2.84831672011889,0.148442139064825,0.173485326766136,0,0,0,0.117588707135705,0,0,0,0,0,0.220841518460394,0,0,0,0,1.02182822083437,0,0.599902730993408,0.254140454146129,0.149790639404823,0,0,0,0,0,0.162241263067758,0,0.497627882440372,0,0.210441855886474,0.130120442962704,0.459804208866946,0.720248519221397,0.150704817835715,0.408218994907967,0.2562274405697,0.281105173679186,0,0,0,0,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0.234526059981096,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,0,0,0.330418782983798,0.264450566663544,0,0,0,0,0,0.190225626112559,0,0,0.251335208800269,0,0,0,0.216138049874694,0.398282546508734,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50925170356284,0,0.162135226775035,0,0,0,0.624075346229121,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0.345369963731791,0.144649058581512,1.50791283939272,2.17562273527484,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,1.32745138339963,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,2.39219233116994,0.412773735926445,0.185194527369712,0,0.410082683163076,0.686334519619568,0,0,0.138199973804424,0,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,1.58005560314089,0.405450430580328,0.616265742988964,1.16928740680016,0.895133478337407,3.9736270956253,2.04332264183947,1.32920574457119,2.82706059854813,3.20068587950999,2.11734988787365,1.55932609183604,2.5977197242889,2.92192255453922,0,0,0.0897138566094757,0,0.19318959403219,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0.0574354689556133,0.476293691283074,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0.220591419119515,0.463735671240843 | |phase1_expression=0,0,0,0,0,0,0,4.77756296733832,0.281577444303333,0.468129052643987,0.856089841127525,0.0797721589953364,2.05440875917447,0.34968160967599,0.999329285446988,1.21485160433896,0.699561878128147,2.36596624018678,1.91960207048034,2.12194825899015,0.0850432901510698,2.08510997521859,1.30599894569468,3.35984087866154,5.50582274561208,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,7.53356935326434,8.5946887897618,9.94695113550217,7.05877785637217,4.78131839470912,10.6812277666854,0,0,0,0,0,0,0,0,0,0.335565212115473,0,1.34437519656986,0,0,0,0,0,0,0,0,4.04954872776629,0.988866362566974,1.4209602298922,0.299600110518405,0.768436610643109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227178579999552,0.226714680320357,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.45673551887624,2.84831672011889,0.148442139064825,0.173485326766136,0,0,0,0.117588707135705,0,0,0,0,0,0.220841518460394,0,0,0,0,1.02182822083437,0,0.599902730993408,0.254140454146129,0.149790639404823,0,0,0,0,0,0.162241263067758,0,0.497627882440372,0,0.210441855886474,0.130120442962704,0.459804208866946,0.720248519221397,0.150704817835715,0.408218994907967,0.2562274405697,0.281105173679186,0,0,0,0,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0.234526059981096,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,0,0,0.330418782983798,0.264450566663544,0,0,0,0,0,0.190225626112559,0,0,0.251335208800269,0,0,0,0.216138049874694,0.398282546508734,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50925170356284,0,0.162135226775035,0,0,0,0.624075346229121,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0.345369963731791,0.144649058581512,1.50791283939272,2.17562273527484,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,1.32745138339963,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,2.39219233116994,0.412773735926445,0.185194527369712,0,0.410082683163076,0.686334519619568,0,0,0.138199973804424,0,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,1.58005560314089,0.405450430580328,0.616265742988964,1.16928740680016,0.895133478337407,3.9736270956253,2.04332264183947,1.32920574457119,2.82706059854813,3.20068587950999,2.11734988787365,1.55932609183604,2.5977197242889,2.92192255453922,0,0,0.0897138566094757,0,0.19318959403219,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0.0574354689556133,0.476293691283074,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0.220591419119515,0.463735671240843 | ||
|short_description=p@chr10:59853531..59853548,+ | |||
}} | }} |
Latest revision as of 13:05, 4 August 2015
Short description: | p@chr10:59853531..59853548, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:59853531..59853548, + |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 1.18e-09 | 25 |
hematopoietic cell | 4.37e-07 | 32 |
hematopoietic oligopotent progenitor cell | 4.37e-07 | 32 |
hematopoietic stem cell | 4.37e-07 | 32 |
hematopoietic multipotent progenitor cell | 4.37e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.97e-25 | 48 |
immune system | 4.97e-25 | 48 |
hematopoietic system | 1.09e-19 | 45 |
blood island | 1.09e-19 | 45 |
thymus | 3.44e-13 | 23 |
neck | 3.44e-13 | 23 |
respiratory system epithelium | 3.44e-13 | 23 |
hemolymphoid system gland | 3.44e-13 | 23 |
pharyngeal epithelium | 3.44e-13 | 23 |
thymic region | 3.44e-13 | 23 |
pharyngeal gland | 3.44e-13 | 23 |
entire pharyngeal arch endoderm | 3.44e-13 | 23 |
thymus primordium | 3.44e-13 | 23 |
early pharyngeal endoderm | 3.44e-13 | 23 |
pharynx | 1.55e-12 | 24 |
gland of gut | 1.55e-12 | 24 |
upper respiratory tract | 1.55e-12 | 24 |
chordate pharynx | 1.55e-12 | 24 |
pharyngeal arch system | 1.55e-12 | 24 |
pharyngeal region of foregut | 1.55e-12 | 24 |
hemopoietic organ | 7.42e-12 | 29 |
immune organ | 7.42e-12 | 29 |
segment of respiratory tract | 7.23e-11 | 27 |
mixed endoderm/mesoderm-derived structure | 2.35e-09 | 35 |
lymphoid system | 6.92e-09 | 3 |
bone marrow | 1.26e-08 | 16 |
lateral plate mesoderm | 6.34e-08 | 87 |
musculoskeletal system | 1.35e-07 | 32 |
craniocervical region | 1.52e-07 | 36 |
mesoderm | 6.60e-07 | 120 |
mesoderm-derived structure | 6.60e-07 | 120 |
presumptive mesoderm | 6.60e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 1.81e-09 | 3 |
muscle cancer | 1.81e-09 | 3 |