FFCP PHASE1:Mm9::chr15:102289597..102289614,+: Difference between revisions
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{{FFCP|EntrezGene=66151|HGNC=|UniProt=Q9CQJ5|association_with_transcript=0bp_to_ENSMUST00000023810,NM_001170911,NM_025385,uc007xvr.2,uc007xvs.2_5end|description=CAGE_peak_3_at_Prr13_5end|id=chr15:102289597..102289614,+|ontology_enrichment_celltype=CL:0000055!3.78e-09!50;CL:0000221!4.33e-07!44;CL:0000133!4.33e-07!44;CL:0002319!5.15e-07!43|ontology_enrichment_celltype_v019_2=CL:0000221,4.31e-07,44;CL:0000133,4.31e-07,44;CL:0002319,5.12e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!8.55e-16!50;UBERON:0006238!8.55e-16!50;UBERON:0002616!1.80e-15!49;UBERON:0000073!2.73e-15!75;UBERON:0001016!2.73e-15!75;UBERON:0001017!2.78e-15!73;UBERON:0005743!2.78e-15!73;UBERON:0004121!1.07e-14!102;UBERON:0000924!1.07e-14!102;UBERON:0006601!1.07e-14!102;UBERON:0001049!1.08e-13!52;UBERON:0005068!1.08e-13!52;UBERON:0006241!1.08e-13!52;UBERON:0007135!1.08e-13!52;UBERON:0000033!1.49e-13!63;UBERON:0004111!7.96e-13!122;UBERON:0002346!2.28e-12!71;UBERON:0003075!2.28e-12!71;UBERON:0007284!2.28e-12!71;UBERON:0000025!3.92e-12!114;UBERON:0000477!1.16e-11!154;UBERON:0003080!7.07e-11!40;UBERON:0002780!2.27e-10!39;UBERON:0001890!2.27e-10!39;UBERON:0006240!2.27e-10!39;UBERON:0007811!3.45e-10!86;UBERON:0000153!4.88e-10!94;UBERON:0002791!6.08e-10!29;UBERON:0003528!6.08e-10!29;UBERON:0001893!6.08e-10!29;UBERON:0002020!5.38e-09!34;UBERON:0003056!9.31e-09!49;UBERON:0000956!6.87e-08!21;UBERON:0001869!6.87e-08!21;UBERON:0000203!6.87e-08!21;UBERON:0000119!8.13e-07!183|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.58e-16,92;UBERON:0001016,2.69e-15,75;UBERON:0001017,2.73e-15,73;UBERON:0000073,1.41e-14,54;UBERON:0000955,2.90e-14,47;UBERON:0006238,2.90e-14,47;UBERON:0002616,6.02e-14,46;UBERON:0001049,1.06e-13,52;UBERON:0005068,1.06e-13,52;UBERON:0006241,1.06e-13,52;UBERON:0007135,1.06e-13,52;UBERON:0004111,8.61e-13,122;UBERON:0004121,1.14e-12,95;UBERON:0000924,1.14e-12,95;UBERON:0006601,1.14e-12,95;UBERON:0000025,4.24e-12,114;UBERON:0003080,7.00e-11,40;UBERON:0002346,1.77e-10,64;UBERON:0003075,1.77e-10,64;UBERON:0007284,1.77e-10,64;UBERON:0002780,2.24e-10,39;UBERON:0001890,2.24e-10,39;UBERON:0006240,2.24e-10,39;UBERON:0003528,6.02e-10,29;UBERON:0002791,6.02e-10,29;UBERON:0001893,6.02e-10,29;UBERON:0010371,1.31e-09,73;UBERON:0002020,5.33e-09,34;UBERON:0003056,9.24e-09,49;UBERON:0000956,6.82e-08,21;UBERON:0001869,6.82e-08,21;UBERON:0000203,6.82e-08,21|phase1_expression=3.84357233051505,0.697950815278722,1.81999695755814,0.30246421130683,0.500895729946347,0.33575854382378,0,10.7172358456508,1.12630977721333,0.70219357896598,1.71217968225505,2.23362045186942,6.84802919724823,7.69299541287177,2.33176833270964,3.23960427823721,3.49780939064073,10.567982539501,9.73512478600745,8.06340338416257,5.01755411891312,0.695036658406197,1.04479915655574,1.27993938234725,1.37645568640302,1.72269589234506,0,1.29282739611533,0.760093677825496,1.76421090831952,0.665191531965914,0.635030673459631,0.61506478758457,0,0.288851619751275,0.166234645358492,0.612508068787107,21.3451131675823,16.4080422349998,15.1821885752402,19.4116391050235,14.3439551841274,16.9928623560904,12.211991343631,10.644577778049,7.70896359079063,27.3836970521814,6.1047043786525,16.4764637050854,11.665793944457,6.29938897314131,8.62515386189829,9.06026072711776,5.80289713609076,5.04140698713696,5.91696702882678,6.87680255853016,9.28209766099396,10.5204559646991,7.40587370980846,5.07065122804943,8.4711133017283,2.66788438833342,10.3488467487361,10.8775299882367,10.6572017241915,13.4820049733282,18.8266969607562,9.22837549545451,9.31540974488665,9.67494822216357,3.99911378165325,4.19650227808066,6.36952155917761,5.84657373211242,3.67687514644008,9.91042928994498,10.0872997087298,12.7493422602682,7.25374582516066,8.59983849862651,8.85552729946492,10.0505879640497,12.9435400307286,9.16789486660861,2.65165726926301,3.84403538157578,3.91438836233131,3.63485727999283,5.06329452715463,5.2175607966302,5.16254326188832,2.03991400112325,2.15881276655127,7.79731700937203,3.13618820968135,3.08977724289854,10.7371103224176,7.01422212427746,8.48014978824817,4.78867627240714,5.13305909657271,12.7402619853323,0,1.08245520505607,0,0,3.31133251185274,13.2058320660058,12.7660239595749,3.29622120855658,5.78484408793068,6.22661842591358,8.28974523039424,6.34979018532806,10.8073268543521,1.97755974187499,8.24216334443496,2.65383165584962,2.91180329905337,3.5334642953663,3.87900202508178,0,12.5895742714965,10.6817820474862,2.04365644166873,4.31334448221313,3.59941638596045,4.82866862877646,11.2342979553617,4.57500602818627,3.26701315493447,16.1656617778817,10.7400492078739,10.5971902725376,10.058958310201,2.44414473240759,5.22509276562391,6.06534620240819,6.52369753248069,2.08192708740326,1.14951052216736,2.52086981727489,3.31550599238573,3.40182495756639,3.20284300712124,3.18585863503078,6.46758426847539,3.23351989399263,1.89106080167819,3.51902248327898,2.6303487891309,5.00485048606076,4.87553033131033,4.11564272815887,1.79130840136644,2.80885274925294,3.3455227924913,5.39910648851626,5.59239585845855,4.69052119962192,4.68161359798639,6.15536312521547,5.3126342571799,6.17068451549513,8.8362899005155,3.75582761959467,4.78737903705395,5.10135534731789,6.56669856316381,3.89130285820108,4.67839959761063,5.26920276698522,5.36825675041487,12.4071069652835,10.3933658503077,1.32167513193519,0.264450566663544,0.853153002140936,1.39342003116263,1.80414445850931,3.02525286935014,1.55664630691409,1.14135375667535,1.89811624617805,1.81168850196412,2.01068167040216,1.39269530428806,1.75467678407208,0.898819408654221,1.08069024937347,2.58883655230677,1.89667900953082,1.82797620175566,0,3.46207257337034,0.969762435838129,0.98190147846446,1.26473074248515,2.21415221969403,3.29697328466887,3.20832626196681,3.26097889795864,4.33797274861845,5.11053387294328,4.04751802292737,3.65148218499305,2.65294875727659,5.0925170356284,2.30156909960649,3.08056930872567,3.0201755450689,1.43768206527355,2.23284568601102,2.18426371180192,1.01031551178845,3.94674309748207,1.4473305640901,8.68339993783042,1.51593129416388,1.62964976442026,1.86719594352707,0.938760993154008,2.68010011906905,3.80869825417622,3.12213836572478,3.62560831444239,2.87904096543407,3.18909537314974,5.73521601505083,7.42545422023351,5.93061140184197,6.03165135757089,3.26343410291226,2.45882136509518,2.75936746304733,16.8578119487182,11.4867452860359,4.42624352517024,4.79694761688309,2.2085575359138,2.73307121007647,3.01592756825919,3.34556317133573,4.45597348164788,3.39691836946599,3.23848561339915,2.92255857911312,1.97643888973262,7.06906896127976,6.24536374916382,3.02711526234334,2.28041743095006,5.77395430403874,2.65490276679926,2.91336763385978,1.81394134178851,1.69744571780308,2.36241514304618,2.15204603560749,1.55056975900933,1.81766864738753,1.42598951353889,1.8962205476149,2.10837217149998,3.09406629744561,14.2984634416591,3.06103859853227,5.04498866752743,3.00071849044229,6.0295679438373,2.85390108163313,4.11372551505302,4.87143918583359,4.4587624532105,3.81297727554876,3.08739757276947,8.07942639413252,5.32832608096488,3.67908842061751,3.22305328808468,1.64140899745061,0.874442509889552,16.6882771809459,5.63873906632914,3.714963623338,4.62986318424279,5.65105371014073,6.01454601972511,4.57556346413045,7.64902934972349,7.83728133012485,5.11339903076368,4.77335309007557,1.73984796469624,2.64315307264903,1.83609079397062,2.92723614420256,1.09181281873089,1.61837215661785,2.39695021603474,2.6175594198403,1.94422459937689,7.45607175704311,1.12738587736838,2.39226473670366,1.98550188548517,2.52786544847262,3.87479470433193,4.05494701177868,3.28600268208111,3.25510962109875,2.09718688851422,0.724752362478018,0.864090018773596,2.52808896502543,5.47358081283443,5.44368072973584,6.62596197186755,5.37080087002444,6.15912199821921,3.4856680360791,3.98761723371358,2.22126189885925,3.65792671943999,2.41982844328417,2.14407337627455,2.69393156592922,1.8700304349051,4.0811469050738,1.33191572024439,1.88399098879899,3.52557694364565,5.79568782096571,7.3196165425961,4.76194223094889,4.50173596066038,4.01257683228291,6.21227026878773,4.60325236507177,5.15605962095457,3.78077001156113,5.48066015816514,13.5970901530146,9.45031500324528,9.45674526770863,14.0474146785103,8.28416498802912,1.97195960409936,3.99024873401031,2.39027048055788,4.132814190161,3.14419743941973,2.94149613520023,2.22246727801615,1.85431551515005,4.1719497246936,3.79045817645696,2.02783439912192,2.07488975524684,3.37109426891577,2.81710670581425,3.50356360629241,4.76293691283074,1.85414921511769,2.70072908649187,2.88460130562315,4.26876868389752,3.42869252385415,3.19456451086807,3.09967046931517,2.90692833264657,2.63506265162926,2.96151127620868,3.65855945745545,3.15683653725411,3.80251518768413,0,1.30498519936592,2.9551344712669,2.86461730218783,3.09873682371932,2.89359916471712,3.99696924700713,2.10538447600868,3.86767897286937,4.01705497344571,3.30887128679273,1.15933917810211|short_description=p3@Prr13}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:66151 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9CQJ5 | |||
|association_with_transcript=0bp_to_ENSMUST00000023810,NM_001170911,NM_025385,uc007xvr.2,uc007xvs.2_5end | |||
|cluster_id=chr15:102289597..102289614,+ | |||
|description=CAGE_peak_3_at_Prr13_5end | |||
|id=chr15:102289597..102289614,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.78e-09!50;CL:0000221!4.33e-07!44;CL:0000133!4.33e-07!44;CL:0002319!5.15e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.31e-07,44;CL:0000133,4.31e-07,44;CL:0002319,5.12e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!8.55e-16!50;UBERON:0006238!8.55e-16!50;UBERON:0002616!1.80e-15!49;UBERON:0000073!2.73e-15!75;UBERON:0001016!2.73e-15!75;UBERON:0001017!2.78e-15!73;UBERON:0005743!2.78e-15!73;UBERON:0004121!1.07e-14!102;UBERON:0000924!1.07e-14!102;UBERON:0006601!1.07e-14!102;UBERON:0001049!1.08e-13!52;UBERON:0005068!1.08e-13!52;UBERON:0006241!1.08e-13!52;UBERON:0007135!1.08e-13!52;UBERON:0000033!1.49e-13!63;UBERON:0004111!7.96e-13!122;UBERON:0002346!2.28e-12!71;UBERON:0003075!2.28e-12!71;UBERON:0007284!2.28e-12!71;UBERON:0000025!3.92e-12!114;UBERON:0000477!1.16e-11!154;UBERON:0003080!7.07e-11!40;UBERON:0002780!2.27e-10!39;UBERON:0001890!2.27e-10!39;UBERON:0006240!2.27e-10!39;UBERON:0007811!3.45e-10!86;UBERON:0000153!4.88e-10!94;UBERON:0002791!6.08e-10!29;UBERON:0003528!6.08e-10!29;UBERON:0001893!6.08e-10!29;UBERON:0002020!5.38e-09!34;UBERON:0003056!9.31e-09!49;UBERON:0000956!6.87e-08!21;UBERON:0001869!6.87e-08!21;UBERON:0000203!6.87e-08!21;UBERON:0000119!8.13e-07!183 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.58e-16,92;UBERON:0001016,2.69e-15,75;UBERON:0001017,2.73e-15,73;UBERON:0000073,1.41e-14,54;UBERON:0000955,2.90e-14,47;UBERON:0006238,2.90e-14,47;UBERON:0002616,6.02e-14,46;UBERON:0001049,1.06e-13,52;UBERON:0005068,1.06e-13,52;UBERON:0006241,1.06e-13,52;UBERON:0007135,1.06e-13,52;UBERON:0004111,8.61e-13,122;UBERON:0004121,1.14e-12,95;UBERON:0000924,1.14e-12,95;UBERON:0006601,1.14e-12,95;UBERON:0000025,4.24e-12,114;UBERON:0003080,7.00e-11,40;UBERON:0002346,1.77e-10,64;UBERON:0003075,1.77e-10,64;UBERON:0007284,1.77e-10,64;UBERON:0002780,2.24e-10,39;UBERON:0001890,2.24e-10,39;UBERON:0006240,2.24e-10,39;UBERON:0003528,6.02e-10,29;UBERON:0002791,6.02e-10,29;UBERON:0001893,6.02e-10,29;UBERON:0010371,1.31e-09,73;UBERON:0002020,5.33e-09,34;UBERON:0003056,9.24e-09,49;UBERON:0000956,6.82e-08,21;UBERON:0001869,6.82e-08,21;UBERON:0000203,6.82e-08,21 | |||
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| |||
|short_description=p3@Prr13 | |||
}} |
Revision as of 01:02, 5 August 2015
Short description: | p3@Prr13 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Prr13_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000023810, NM_001170911, NM_025385, uc007xvr.2, uc007xvs.2_5end |
EntrezGene: | 66151 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.31e-07 | 44 |
neurectodermal cell | 4.31e-07 | 44 |
neural cell | 5.12e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 8.58e-16 | 92 |
nervous system | 2.69e-15 | 75 |
central nervous system | 2.73e-15 | 73 |
regional part of nervous system | 1.41e-14 | 54 |
brain | 2.90e-14 | 47 |
future brain | 2.90e-14 | 47 |
regional part of brain | 6.02e-14 | 46 |
neural tube | 1.06e-13 | 52 |
neural rod | 1.06e-13 | 52 |
future spinal cord | 1.06e-13 | 52 |
neural keel | 1.06e-13 | 52 |
anatomical conduit | 8.61e-13 | 122 |
ectoderm-derived structure | 1.14e-12 | 95 |
ectoderm | 1.14e-12 | 95 |
presumptive ectoderm | 1.14e-12 | 95 |
tube | 4.24e-12 | 114 |
anterior neural tube | 7.00e-11 | 40 |
neurectoderm | 1.77e-10 | 64 |
neural plate | 1.77e-10 | 64 |
presumptive neural plate | 1.77e-10 | 64 |
regional part of forebrain | 2.24e-10 | 39 |
forebrain | 2.24e-10 | 39 |
future forebrain | 2.24e-10 | 39 |
brain grey matter | 6.02e-10 | 29 |
regional part of telencephalon | 6.02e-10 | 29 |
telencephalon | 6.02e-10 | 29 |
ecto-epithelium | 1.31e-09 | 73 |
gray matter | 5.33e-09 | 34 |
pre-chordal neural plate | 9.24e-09 | 49 |
cerebral cortex | 6.82e-08 | 21 |
cerebral hemisphere | 6.82e-08 | 21 |
pallium | 6.82e-08 | 21 |