FFCP PHASE1:Mm9::chr6:48487630..48487732,+: Difference between revisions
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{{FFCP|EntrezGene=76252|HGNC=|MCL_coexpression_id=1|UniProt=Q91XE7|association_with_transcript=62bp_to_ENSMUST00000040361,NM_133764,uc009bup.2_5end|description=CAGE_peak_1_at_Atp6v0e2_5end|id=chr6:48487630..48487732,+|ontology_enrichment_celltype=CL:0000221!7.22e-18!44;CL:0000133!7.22e-18!44;CL:0002319!1.58e-17!43;CL:0000540!6.37e-15!33;CL:0000047!6.37e-15!33;CL:0000031!6.37e-15!33;CL:0000404!6.37e-15!33;CL:0000055!8.39e-13!50;CL:0000117!8.10e-12!23;CL:0000337!8.10e-12!23;CL:0000393!6.69e-11!39;CL:0000211!6.69e-11!39;CL:0002321!7.17e-07!70;CL:0000220!7.17e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,6.70e-18,44;CL:0000133,6.70e-18,44;CL:0002319,1.47e-17,43;CL:0000540,5.99e-15,33;CL:0000047,5.99e-15,33;CL:0000031,5.99e-15,33;CL:0000404,5.99e-15,33;CL:0000117,7.73e-12,23;CL:0000337,7.73e-12,23;CL:0000393,7.25e-11,39;CL:0000211,7.25e-11,39;CL:0002321,7.49e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.04e-37!75;UBERON:0001016!1.04e-37!75;UBERON:0001017!2.60e-37!73;UBERON:0005743!2.60e-37!73;UBERON:0004121!3.19e-36!102;UBERON:0000924!3.19e-36!102;UBERON:0006601!3.19e-36!102;UBERON:0002346!9.36e-33!71;UBERON:0003075!9.36e-33!71;UBERON:0007284!9.36e-33!71;UBERON:0000033!1.92e-28!63;UBERON:0001049!4.72e-27!52;UBERON:0005068!4.72e-27!52;UBERON:0006241!4.72e-27!52;UBERON:0007135!4.72e-27!52;UBERON:0000955!8.69e-26!50;UBERON:0006238!8.69e-26!50;UBERON:0002616!3.95e-25!49;UBERON:0003056!1.27e-23!49;UBERON:0003080!6.70e-21!40;UBERON:0002780!3.22e-20!39;UBERON:0001890!3.22e-20!39;UBERON:0006240!3.22e-20!39;UBERON:0002020!2.45e-19!34;UBERON:0002791!1.73e-16!29;UBERON:0003528!1.73e-16!29;UBERON:0001893!1.73e-16!29;UBERON:0000956!2.21e-12!21;UBERON:0001869!2.21e-12!21;UBERON:0000203!2.21e-12!21;UBERON:0002619!7.44e-11!17;UBERON:0007811!7.18e-10!86;UBERON:0000468!1.91e-09!333;UBERON:0002021!3.50e-08!10;UBERON:0000411!3.50e-08!10;UBERON:0001950!3.50e-08!10;UBERON:0000153!1.90e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.78e-38,75;UBERON:0001017,2.21e-37,73;UBERON:0004121,3.56e-34,95;UBERON:0000924,3.56e-34,95;UBERON:0006601,3.56e-34,95;UBERON:0002346,2.90e-31,64;UBERON:0003075,2.90e-31,64;UBERON:0007284,2.90e-31,64;UBERON:0000073,2.65e-28,54;UBERON:0001049,4.21e-27,52;UBERON:0005068,4.21e-27,52;UBERON:0006241,4.21e-27,52;UBERON:0007135,4.21e-27,52;UBERON:0010371,4.21e-26,73;UBERON:0010314,3.11e-24,92;UBERON:0000955,5.49e-24,47;UBERON:0006238,5.49e-24,47;UBERON:0003056,1.15e-23,49;UBERON:0002616,2.44e-23,46;UBERON:0003080,6.13e-21,40;UBERON:0002780,2.96e-20,39;UBERON:0001890,2.96e-20,39;UBERON:0006240,2.96e-20,39;UBERON:0002020,2.26e-19,34;UBERON:0003528,1.61e-16,29;UBERON:0002791,1.61e-16,29;UBERON:0001893,1.61e-16,29;UBERON:0000956,2.10e-12,21;UBERON:0001869,2.10e-12,21;UBERON:0000203,2.10e-12,21;UBERON:0002619,7.13e-11,17;UBERON:0002021,3.39e-08,10;UBERON:0000411,3.39e-08,10;UBERON:0001950,3.39e-08,10;UBERON:0000922,7.97e-07,320|phase1_expression=89.6833543786846,32.4547129104606,42.7699285026164,51.7213801334679,45.0806156951712,17.7952028226603,32.4721570427781,3.74457637980571,0,0,0,0.638177271962691,0,0.611942816932982,0,0.202475267389826,0,0.157731082679119,0,0,117.699913569081,0,0,59.6771737019407,61.7110966070687,34.4539178469012,40.9223896351121,35.5527533931717,86.8407026915629,40.5768508913488,31.9291935343639,0,0.61506478758457,0,6.64358725427932,9.64160943079256,6.32925004413344,0,0,0,0,0,0,28.8303713164072,27.3717714292689,7.70896359079063,18.7773922643529,236.993344985545,122.145517600366,115.880219848273,67.7534280666755,168.190500307017,0,0,0,1.54355661621568,0.573066879877513,12.3761302146586,223.155056328136,292.532011537434,224.376316841187,14.2314703469035,11.5608323494448,61.6431306337758,90.9757053561617,77.4423325291249,201.930474489405,317.364320195604,98.6088213053623,110.299851616991,105.372805637042,516.171328817673,446.375321263211,124.573142801608,108.497073192644,137.882817991503,439.362365187561,400.938241587489,351.144535023773,222.360281113107,250.310192896193,201.072561034909,362.379532703792,388.868963531891,370.688549106541,425.149048838502,352.939396700976,231.508111715023,59.1421569932167,68.3166903365341,42.8999443278483,0.860423876981386,4.75979933595425,11.3337670243942,0.649776417447669,0.448026887097336,63.3404334794201,0.170430322578058,0,0,102.393166177647,0,0,0,15.5873549528074,13.4280728701802,14.1546844604139,44.3033453309953,2.84831672011889,149.778118316408,48.7493768212842,77.3342314912839,60.6518757783434,67.9759108892328,65.732087288859,63.3359620301564,6.17987419335935,14.1707369781513,12.3845477272982,22.6473589926373,26.0592991783264,24.2437626567611,54.0536107532554,403.451938281912,436.068043585613,38.0631012260801,0,0,0,623.878013121087,504.165664306126,313.004991113145,738.40571217679,662.047319028226,570.793758405112,547.888745379818,35.0327411645088,38.5661608891288,99.3200440644342,125.844229820111,46.3228776947225,66.2118060768402,83.008641840266,73.2425414681575,105.252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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:76252 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q91XE7 | |||
|association_with_transcript=62bp_to_ENSMUST00000040361,NM_133764,uc009bup.2_5end | |||
|cluster_id=chr6:48487630..48487732,+ | |||
|description=CAGE_peak_1_at_Atp6v0e2_5end | |||
|id=chr6:48487630..48487732,+ | |||
|ontology_enrichment_celltype=CL:0000221!7.22e-18!44;CL:0000133!7.22e-18!44;CL:0002319!1.58e-17!43;CL:0000540!6.37e-15!33;CL:0000047!6.37e-15!33;CL:0000031!6.37e-15!33;CL:0000404!6.37e-15!33;CL:0000055!8.39e-13!50;CL:0000117!8.10e-12!23;CL:0000337!8.10e-12!23;CL:0000393!6.69e-11!39;CL:0000211!6.69e-11!39;CL:0002321!7.17e-07!70;CL:0000220!7.17e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.70e-18,44;CL:0000133,6.70e-18,44;CL:0002319,1.47e-17,43;CL:0000540,5.99e-15,33;CL:0000047,5.99e-15,33;CL:0000031,5.99e-15,33;CL:0000404,5.99e-15,33;CL:0000117,7.73e-12,23;CL:0000337,7.73e-12,23;CL:0000393,7.25e-11,39;CL:0000211,7.25e-11,39;CL:0002321,7.49e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.04e-37!75;UBERON:0001016!1.04e-37!75;UBERON:0001017!2.60e-37!73;UBERON:0005743!2.60e-37!73;UBERON:0004121!3.19e-36!102;UBERON:0000924!3.19e-36!102;UBERON:0006601!3.19e-36!102;UBERON:0002346!9.36e-33!71;UBERON:0003075!9.36e-33!71;UBERON:0007284!9.36e-33!71;UBERON:0000033!1.92e-28!63;UBERON:0001049!4.72e-27!52;UBERON:0005068!4.72e-27!52;UBERON:0006241!4.72e-27!52;UBERON:0007135!4.72e-27!52;UBERON:0000955!8.69e-26!50;UBERON:0006238!8.69e-26!50;UBERON:0002616!3.95e-25!49;UBERON:0003056!1.27e-23!49;UBERON:0003080!6.70e-21!40;UBERON:0002780!3.22e-20!39;UBERON:0001890!3.22e-20!39;UBERON:0006240!3.22e-20!39;UBERON:0002020!2.45e-19!34;UBERON:0002791!1.73e-16!29;UBERON:0003528!1.73e-16!29;UBERON:0001893!1.73e-16!29;UBERON:0000956!2.21e-12!21;UBERON:0001869!2.21e-12!21;UBERON:0000203!2.21e-12!21;UBERON:0002619!7.44e-11!17;UBERON:0007811!7.18e-10!86;UBERON:0000468!1.91e-09!333;UBERON:0002021!3.50e-08!10;UBERON:0000411!3.50e-08!10;UBERON:0001950!3.50e-08!10;UBERON:0000153!1.90e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.78e-38,75;UBERON:0001017,2.21e-37,73;UBERON:0004121,3.56e-34,95;UBERON:0000924,3.56e-34,95;UBERON:0006601,3.56e-34,95;UBERON:0002346,2.90e-31,64;UBERON:0003075,2.90e-31,64;UBERON:0007284,2.90e-31,64;UBERON:0000073,2.65e-28,54;UBERON:0001049,4.21e-27,52;UBERON:0005068,4.21e-27,52;UBERON:0006241,4.21e-27,52;UBERON:0007135,4.21e-27,52;UBERON:0010371,4.21e-26,73;UBERON:0010314,3.11e-24,92;UBERON:0000955,5.49e-24,47;UBERON:0006238,5.49e-24,47;UBERON:0003056,1.15e-23,49;UBERON:0002616,2.44e-23,46;UBERON:0003080,6.13e-21,40;UBERON:0002780,2.96e-20,39;UBERON:0001890,2.96e-20,39;UBERON:0006240,2.96e-20,39;UBERON:0002020,2.26e-19,34;UBERON:0003528,1.61e-16,29;UBERON:0002791,1.61e-16,29;UBERON:0001893,1.61e-16,29;UBERON:0000956,2.10e-12,21;UBERON:0001869,2.10e-12,21;UBERON:0000203,2.10e-12,21;UBERON:0002619,7.13e-11,17;UBERON:0002021,3.39e-08,10;UBERON:0000411,3.39e-08,10;UBERON:0001950,3.39e-08,10;UBERON:0000922,7.97e-07,320 | |||
|phase1_expression=89.6833543786846,32.4547129104606,42.7699285026164,51.7213801334679,45.0806156951712,17.7952028226603,32.4721570427781,3.74457637980571,0,0,0,0.638177271962691,0,0.611942816932982,0,0.202475267389826,0,0.157731082679119,0,0,117.699913569081,0,0,59.6771737019407,61.7110966070687,34.4539178469012,40.9223896351121,35.5527533931717,86.8407026915629,40.5768508913488,31.9291935343639,0,0.61506478758457,0,6.64358725427932,9.64160943079256,6.32925004413344,0,0,0,0,0,0,28.8303713164072,27.3717714292689,7.70896359079063,18.7773922643529,236.993344985545,122.145517600366,115.880219848273,67.7534280666755,168.190500307017,0,0,0,1.54355661621568,0.573066879877513,12.3761302146586,223.155056328136,292.532011537434,224.376316841187,14.2314703469035,11.5608323494448,61.6431306337758,90.9757053561617,77.4423325291249,201.930474489405,317.364320195604,98.6088213053623,110.299851616991,105.372805637042,516.171328817673,446.375321263211,124.573142801608,108.497073192644,137.882817991503,439.362365187561,400.938241587489,351.144535023773,222.360281113107,250.310192896193,201.072561034909,362.379532703792,388.868963531891,370.688549106541,425.149048838502,352.939396700976,231.508111715023,59.1421569932167,68.3166903365341,42.8999443278483,0.860423876981386,4.75979933595425,11.3337670243942,0.649776417447669,0.448026887097336,63.3404334794201,0.170430322578058,0,0,102.393166177647,0,0,0,15.5873549528074,13.4280728701802,14.1546844604139,44.3033453309953,2.84831672011889,149.778118316408,48.7493768212842,77.3342314912839,60.6518757783434,67.9759108892328,65.732087288859,63.3359620301564,6.17987419335935,14.1707369781513,12.3845477272982,22.6473589926373,26.0592991783264,24.2437626567611,54.0536107532554,403.451938281912,436.068043585613,38.0631012260801,0,0,0,623.878013121087,504.165664306126,313.004991113145,738.40571217679,662.047319028226,570.793758405112,547.888745379818,35.0327411645088,38.5661608891288,99.3200440644342,125.844229820111,46.3228776947225,66.2118060768402,83.008641840266,73.2425414681575,105.252464187104,137.594135585929,132.494238527457,305.011274101299,2.58681591519411,7.94245536704841,5.80638709741031,10.5213951565236,15.0145514581823,13.2335823278423,12.9642745937004,16.1217756122979,0,0,0,28.7904823824348,37.2896435369943,23.768192112854,23.2009840873506,23.2181793461937,24.9912722877553,18.1376476905318,14.2184902741798,14.3621371111618,10.6963902443762,16.9092488001468,16.2137619091711,17.1053985287639,21.0768110679409,19.1915178827332,609.630560887405,279.488927222137,30.0681092515256,66.6415427992132,21.1155368029882,24.8493238890669,24.6136851125198,21.3784536100743,25.795853086005,29.6751976735592,32.7425052465713,32.1162961711821,30.4115602648326,32.4299049427076,26.3201517610812,28.7622210769351,34.5820879799511,34.8497228195143,33.1918826667893,30.0473588163587,29.3040112750009,33.6024690944769,30.4505404853172,25.5995742599663,47.6171124545657,62.2914824473921,76.1443830030668,72.0639437303315,1.77871576252289,3.67059232575407,3.53806191203765,1.57403478669398,2.84004169943904,1.68824011826692,2.80088436959562,1.43848068725405,3.72911021582581,3.56929837144506,14.3768206527355,8.55924179637558,14.0416952901552,4.54641980304801,5.38192240565737,2.41221760681684,41.0152082169862,9.85355341206521,8.63714375142737,8.65699937453459,10.0916806764056,7.70528784232352,9.75978927632656,4.29294025287157,15.1329738341943,18.3815692408483,14.3509291791738,24.7433605220764,22.2763626607005,31.099547595025,30.1582567878545,53.3027570142335,1.47529281905711,5.51873492609465,603.50966776411,520.654311842566,2.62295912602681,92.9093012112093,88.9733178753844,88.2391562110403,141.533172310449,97.7382383625938,105.383772840972,81.2429643363949,103.226728927098,132.684159491736,120.958060051636,500.297289668754,112.27460739974,34.3666615077803,36.9753397732618,71.9269736160255,13.2745138339963,21.1219153454834,16.0231485191318,19.4263232148575,28.644283609435,24.5948118355142,18.6068371081119,19.6308213917853,15.329387270543,14.8537276229834,16.8669773719998,7.21948802737308,239.669482450667,51.8575950810173,93.5263283749315,78.4473548215628,103.389356213445,96.4975303227202,137.069334161567,231.393361327095,15.9576761483323,13.7690846061483,49.6188895623664,12.2015827176695,12.2712964288888,10.7357006372117,11.5791173683042,9.35603128546849,27.9821603164657,535.137421602331,1.36696704638282,11.144890870014,4.07427960213366,1.50694765603753,0.820165366326151,0.915112692826091,0,0,0.276399947608848,44.8695190467103,21.9853515538889,22.7717803182071,23.2211482766873,30.5268912181124,31.4442091794496,36.5482378702864,38.1032430893799,20.4169634747543,51.5867593701336,3.10669656543463,70.4616173355238,10.9147078612105,12.7403037651965,21.1951795295012,24.2820468138134,33.9601812236464,34.7377426391432,38.1498847592774,45.5089554807585,38.411875211335,40.3242008761012,3.47612232690996,6.68993210457542,5.23825881540619,1.29920822977795,3.04345382634718,1.39076948346885,1.20195449519969,1.03382669022204,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| |||
|short_description=p1@Atp6v0e2 | |||
}} |
Revision as of 19:52, 5 August 2015
Short description: | p1@Atp6v0e2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Atp6v0e2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 62bp_to_ENSMUST00000040361, NM_133764, uc009bup.2_5end |
EntrezGene: | 76252 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.70e-18 | 44 |
neurectodermal cell | 6.70e-18 | 44 |
neural cell | 1.47e-17 | 43 |
neuron | 5.99e-15 | 33 |
neuronal stem cell | 5.99e-15 | 33 |
neuroblast | 5.99e-15 | 33 |
electrically signaling cell | 5.99e-15 | 33 |
CNS neuron (sensu Vertebrata) | 7.73e-12 | 23 |
neuroblast (sensu Vertebrata) | 7.73e-12 | 23 |
electrically responsive cell | 7.25e-11 | 39 |
electrically active cell | 7.25e-11 | 39 |
embryonic cell | 7.49e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.78e-38 | 75 |
central nervous system | 2.21e-37 | 73 |
ectoderm-derived structure | 3.56e-34 | 95 |
ectoderm | 3.56e-34 | 95 |
presumptive ectoderm | 3.56e-34 | 95 |
neurectoderm | 2.90e-31 | 64 |
neural plate | 2.90e-31 | 64 |
presumptive neural plate | 2.90e-31 | 64 |
regional part of nervous system | 2.65e-28 | 54 |
neural tube | 4.21e-27 | 52 |
neural rod | 4.21e-27 | 52 |
future spinal cord | 4.21e-27 | 52 |
neural keel | 4.21e-27 | 52 |
ecto-epithelium | 4.21e-26 | 73 |
structure with developmental contribution from neural crest | 3.11e-24 | 92 |
brain | 5.49e-24 | 47 |
future brain | 5.49e-24 | 47 |
pre-chordal neural plate | 1.15e-23 | 49 |
regional part of brain | 2.44e-23 | 46 |
anterior neural tube | 6.13e-21 | 40 |
regional part of forebrain | 2.96e-20 | 39 |
forebrain | 2.96e-20 | 39 |
future forebrain | 2.96e-20 | 39 |
gray matter | 2.26e-19 | 34 |
brain grey matter | 1.61e-16 | 29 |
regional part of telencephalon | 1.61e-16 | 29 |
telencephalon | 1.61e-16 | 29 |
cerebral cortex | 2.10e-12 | 21 |
cerebral hemisphere | 2.10e-12 | 21 |
pallium | 2.10e-12 | 21 |
regional part of cerebral cortex | 7.13e-11 | 17 |
occipital lobe | 3.39e-08 | 10 |
visual cortex | 3.39e-08 | 10 |
neocortex | 3.39e-08 | 10 |
embryo | 7.97e-07 | 320 |