FFCP PHASE1:Mm9::chr11:69485836..69485861,-: Difference between revisions
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{{FFCP|EntrezGene=13681|HGNC=|UniProt=Q3TSJ4|association_with_transcript=-17bp_to_ENSMUST00000123995,ENSMUST00000128519,ENSMUST00000163666_5end|description=CAGE_peak_2_at_Eif4a1_5end|id=chr11:69485836..69485861,-|ontology_enrichment_celltype=CL:0000117!6.08e-13!23;CL:0000337!6.08e-13!23;CL:0000540!5.07e-09!33;CL:0000047!5.07e-09!33;CL:0000031!5.07e-09!33;CL:0000404!5.07e-09!33;CL:0000393!8.68e-08!39;CL:0000211!8.68e-08!39;CL:0000221!3.13e-07!44;CL:0000133!3.13e-07!44;CL:0002319!3.18e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,5.74e-13,23;CL:0000337,5.74e-13,23;CL:0000540,4.75e-09,33;CL:0000047,4.75e-09,33;CL:0000031,4.75e-09,33;CL:0000404,4.75e-09,33;CL:0000393,8.21e-08,39;CL:0000211,8.21e-08,39;CL:0000221,2.73e-07,44;CL:0000133,2.73e-07,44;CL:0002319,2.77e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!8.72e-20!71;UBERON:0003075!8.72e-20!71;UBERON:0007284!8.72e-20!71;UBERON:0001049!1.34e-19!52;UBERON:0005068!1.34e-19!52;UBERON:0006241!1.34e-19!52;UBERON:0007135!1.34e-19!52;UBERON:0000073!5.22e-19!75;UBERON:0001016!5.22e-19!75;UBERON:0000955!1.59e-18!50;UBERON:0006238!1.59e-18!50;UBERON:0001017!3.72e-18!73;UBERON:0005743!3.72e-18!73;UBERON:0002616!6.58e-18!49;UBERON:0000033!1.72e-17!63;UBERON:0003056!1.27e-16!49;UBERON:0003080!8.10e-16!40;UBERON:0002020!1.22e-15!34;UBERON:0002780!3.15e-15!39;UBERON:0001890!3.15e-15!39;UBERON:0006240!3.15e-15!39;UBERON:0004121!2.78e-14!102;UBERON:0000924!2.78e-14!102;UBERON:0006601!2.78e-14!102;UBERON:0002791!3.18e-13!29;UBERON:0003528!3.18e-13!29;UBERON:0001893!3.18e-13!29;UBERON:0007811!1.01e-11!86;UBERON:0000153!2.38e-11!94;UBERON:0000956!1.41e-09!21;UBERON:0001869!1.41e-09!21;UBERON:0000203!1.41e-09!21;UBERON:0002619!8.63e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.05e-20,64;UBERON:0003075,1.05e-20,64;UBERON:0007284,1.05e-20,64;UBERON:0000073,1.76e-20,54;UBERON:0001049,1.33e-19,52;UBERON:0005068,1.33e-19,52;UBERON:0006241,1.33e-19,52;UBERON:0007135,1.33e-19,52;UBERON:0001016,4.13e-19,75;UBERON:0010314,2.54e-18,92;UBERON:0001017,2.96e-18,73;UBERON:0000955,3.61e-17,47;UBERON:0006238,3.61e-17,47;UBERON:0003056,1.18e-16,49;UBERON:0002616,1.46e-16,46;UBERON:0003080,7.54e-16,40;UBERON:0010371,9.44e-16,73;UBERON:0002020,1.13e-15,34;UBERON:0002780,2.95e-15,39;UBERON:0001890,2.95e-15,39;UBERON:0006240,2.95e-15,39;UBERON:0004121,1.70e-14,95;UBERON:0000924,1.70e-14,95;UBERON:0006601,1.70e-14,95;UBERON:0003528,3.00e-13,29;UBERON:0002791,3.00e-13,29;UBERON:0001893,3.00e-13,29;UBERON:0000956,1.36e-09,21;UBERON:0001869,1.36e-09,21;UBERON:0000203,1.36e-09,21;UBERON:0002619,8.36e-08,17|phase1_expression=2.24208385946712,1.04692622291808,0.909998478779072,0.30246421130683,0,1.34303417529512,1.16806320297763,1.80772652818207,3.51971805379167,2.57470978954193,5.47897498321616,4.30769658574817,0.856003649656029,0.961624426608971,3.33109761815663,2.63217847606774,5.59649502502517,2.36596624018678,1.09691546884591,2.54633791078818,3.31668831589172,2.6808556824239,4.96279599363977,1.27993938234725,1.14704640533585,1.14846392823004,1.29228598847722,1.07735616342945,0.950117097281869,1.26015064879965,2.66076612786366,2.54012269383853,7.38077745101484,15.8481681015439,2.02196133825892,2.82598897109437,1.83752420636132,2.51118978442145,0,3.14114246384279,0,2.73218193983378,0,1.51076181570693,1.82478476195126,1.83546752161682,0.782391344348039,2.39827672018491,2.41654801007919,2.91644848611425,2.09979632438044,0,3.02008690903925,0,1.00828139742739,4.3734104126111,1.43266719969378,2.57836046138721,9.5088736604011,12.1667925232568,8.23980824558033,0.338844532069132,0,1.7997994345628,0,1.4209602298922,2.09720077362883,1.15265491596466,4.87341177849845,4.86021377994086,4.83747411108179,4.28476476605705,5.52171352379034,4.65465037016825,5.55903731905771,4.5960939330501,3.30347642998166,5.49055553766307,7.0659005297872,9.75958529203434,12.1678565991205,8.33461392890816,5.58365998002762,9.56696437053856,7.02871939773326,6.77645746589436,3.84403538157578,9.31997229126503,6.28527404665428,3.47629176491213,1.15945795480671,0.860423876981386,1.3599426674155,1.61910957491345,1.29955283489534,1.34408066129201,0.842666520790511,1.53387290320252,2.33807404142582,1.41335829804136,2.53518155598025,1.28326477414318,0,0,3.030874574157,3.80039798212648,2.52762222507392,1.37020655662872,1.8125651855302,1.03909497345377,4.16364784238726,3.34912026143355,2.30615497256059,2.56228488939458,2.3517741427141,1.75933227861546,0.741584903203122,1.15679485535929,2.65383165584962,1.45590164952668,0.883366073841574,1.45462575940567,3.72783522436244,5.27005434620785,4.60782754989601,1.02182822083437,3.11519323715393,4.19931911695385,3.04968544975355,7.04016005202667,1.83000241127451,6.40837195775608,6.60532416730651,6.13717097592793,7.2725815595846,8.11206315338788,1.93494791315601,1.99051152976149,1.0108910337347,1.05220927943237,2.99277018814219,4.13823787980251,3.06105620669094,3.31550599238573,2.85753296435577,3.07472928683639,4.21657760518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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:13681 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3TSJ4 | |||
|association_with_transcript=-17bp_to_ENSMUST00000123995,ENSMUST00000128519,ENSMUST00000163666_5end | |||
|cluster_id=chr11:69485836..69485861,- | |||
|description=CAGE_peak_2_at_Eif4a1_5end | |||
|id=chr11:69485836..69485861,- | |||
|ontology_enrichment_celltype=CL:0000117!6.08e-13!23;CL:0000337!6.08e-13!23;CL:0000540!5.07e-09!33;CL:0000047!5.07e-09!33;CL:0000031!5.07e-09!33;CL:0000404!5.07e-09!33;CL:0000393!8.68e-08!39;CL:0000211!8.68e-08!39;CL:0000221!3.13e-07!44;CL:0000133!3.13e-07!44;CL:0002319!3.18e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.74e-13,23;CL:0000337,5.74e-13,23;CL:0000540,4.75e-09,33;CL:0000047,4.75e-09,33;CL:0000031,4.75e-09,33;CL:0000404,4.75e-09,33;CL:0000393,8.21e-08,39;CL:0000211,8.21e-08,39;CL:0000221,2.73e-07,44;CL:0000133,2.73e-07,44;CL:0002319,2.77e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!8.72e-20!71;UBERON:0003075!8.72e-20!71;UBERON:0007284!8.72e-20!71;UBERON:0001049!1.34e-19!52;UBERON:0005068!1.34e-19!52;UBERON:0006241!1.34e-19!52;UBERON:0007135!1.34e-19!52;UBERON:0000073!5.22e-19!75;UBERON:0001016!5.22e-19!75;UBERON:0000955!1.59e-18!50;UBERON:0006238!1.59e-18!50;UBERON:0001017!3.72e-18!73;UBERON:0005743!3.72e-18!73;UBERON:0002616!6.58e-18!49;UBERON:0000033!1.72e-17!63;UBERON:0003056!1.27e-16!49;UBERON:0003080!8.10e-16!40;UBERON:0002020!1.22e-15!34;UBERON:0002780!3.15e-15!39;UBERON:0001890!3.15e-15!39;UBERON:0006240!3.15e-15!39;UBERON:0004121!2.78e-14!102;UBERON:0000924!2.78e-14!102;UBERON:0006601!2.78e-14!102;UBERON:0002791!3.18e-13!29;UBERON:0003528!3.18e-13!29;UBERON:0001893!3.18e-13!29;UBERON:0007811!1.01e-11!86;UBERON:0000153!2.38e-11!94;UBERON:0000956!1.41e-09!21;UBERON:0001869!1.41e-09!21;UBERON:0000203!1.41e-09!21;UBERON:0002619!8.63e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.05e-20,64;UBERON:0003075,1.05e-20,64;UBERON:0007284,1.05e-20,64;UBERON:0000073,1.76e-20,54;UBERON:0001049,1.33e-19,52;UBERON:0005068,1.33e-19,52;UBERON:0006241,1.33e-19,52;UBERON:0007135,1.33e-19,52;UBERON:0001016,4.13e-19,75;UBERON:0010314,2.54e-18,92;UBERON:0001017,2.96e-18,73;UBERON:0000955,3.61e-17,47;UBERON:0006238,3.61e-17,47;UBERON:0003056,1.18e-16,49;UBERON:0002616,1.46e-16,46;UBERON:0003080,7.54e-16,40;UBERON:0010371,9.44e-16,73;UBERON:0002020,1.13e-15,34;UBERON:0002780,2.95e-15,39;UBERON:0001890,2.95e-15,39;UBERON:0006240,2.95e-15,39;UBERON:0004121,1.70e-14,95;UBERON:0000924,1.70e-14,95;UBERON:0006601,1.70e-14,95;UBERON:0003528,3.00e-13,29;UBERON:0002791,3.00e-13,29;UBERON:0001893,3.00e-13,29;UBERON:0000956,1.36e-09,21;UBERON:0001869,1.36e-09,21;UBERON:0000203,1.36e-09,21;UBERON:0002619,8.36e-08,17 | |||
|phase1_expression=2.24208385946712,1.04692622291808,0.909998478779072,0.30246421130683,0,1.34303417529512,1.16806320297763,1.80772652818207,3.51971805379167,2.57470978954193,5.47897498321616,4.30769658574817,0.856003649656029,0.961624426608971,3.33109761815663,2.63217847606774,5.59649502502517,2.36596624018678,1.09691546884591,2.54633791078818,3.31668831589172,2.6808556824239,4.96279599363977,1.27993938234725,1.14704640533585,1.14846392823004,1.29228598847722,1.07735616342945,0.950117097281869,1.26015064879965,2.66076612786366,2.54012269383853,7.38077745101484,15.8481681015439,2.02196133825892,2.82598897109437,1.83752420636132,2.51118978442145,0,3.14114246384279,0,2.73218193983378,0,1.51076181570693,1.82478476195126,1.83546752161682,0.782391344348039,2.39827672018491,2.41654801007919,2.91644848611425,2.09979632438044,0,3.02008690903925,0,1.00828139742739,4.3734104126111,1.43266719969378,2.57836046138721,9.5088736604011,12.1667925232568,8.23980824558033,0.338844532069132,0,1.7997994345628,0,1.4209602298922,2.09720077362883,1.15265491596466,4.87341177849845,4.86021377994086,4.83747411108179,4.28476476605705,5.52171352379034,4.65465037016825,5.55903731905771,4.5960939330501,3.30347642998166,5.49055553766307,7.0659005297872,9.75958529203434,12.1678565991205,8.33461392890816,5.58365998002762,9.56696437053856,7.02871939773326,6.77645746589436,3.84403538157578,9.31997229126503,6.28527404665428,3.47629176491213,1.15945795480671,0.860423876981386,1.3599426674155,1.61910957491345,1.29955283489534,1.34408066129201,0.842666520790511,1.53387290320252,2.33807404142582,1.41335829804136,2.53518155598025,1.28326477414318,0,0,3.030874574157,3.80039798212648,2.52762222507392,1.37020655662872,1.8125651855302,1.03909497345377,4.16364784238726,3.34912026143355,2.30615497256059,2.56228488939458,2.3517741427141,1.75933227861546,0.741584903203122,1.15679485535929,2.65383165584962,1.45590164952668,0.883366073841574,1.45462575940567,3.72783522436244,5.27005434620785,4.60782754989601,1.02182822083437,3.11519323715393,4.19931911695385,3.04968544975355,7.04016005202667,1.83000241127451,6.40837195775608,6.60532416730651,6.13717097592793,7.2725815595846,8.11206315338788,1.93494791315601,1.99051152976149,1.0108910337347,1.05220927943237,2.99277018814219,4.13823787980251,3.06105620669094,3.31550599238573,2.85753296435577,3.07472928683639,4.2165776051878,3.88055056108524,3.66465587985832,2.45837904218165,2.63926686245923,1.7535658594206,1.94633074457919,2.089512999133,2.05782136407943,2.58744546864041,3.51106593656617,2.31613116403244,1.98914449576915,3.52113813310353,3.51789089971644,5.22179978236943,2.13070262026689,2.55793501271625,2.77680803197281,2.79040733700489,2.14618721119695,2.45207218971056,1.97471819896177,2.13417703302824,1.94565142910054,1.02339991197733,2.85415149878366,2.01309628140558,5.04695876553905,9.77593817603202,0.330418782983798,0.793351699990633,2.98603550749328,2.78684006232526,2.19074684247559,1.4117846723634,1.55664630691409,0.951128130562796,0.474529061544512,1.31759163779209,2.26201687920243,0.994782360205754,0.974820435595601,1.79763881730844,1.08069024937347,0.796565093017469,3.22435431620239,2.97046132785295,1.1270773567308,2.44381593414377,1.55161989734101,1.19230893813542,1.26473074248515,0.738050739898011,0.784993639206874,1.72756029490521,0.296452627087149,2.50267658574141,3.14494392181125,2.02375901146368,1.01430060694251,2.41177159752417,1.78238096246994,1.72617682470486,2.2698931748505,3.29473695825698,1.43768206527355,0,0.624075346229121,0.757736633841335,0.896987067609561,0.482443521363367,1.10851914099963,3.7898282354097,3.91115943460862,2.03694102930226,1.87752198630802,1.67506257441816,1.19021820443007,0.780534591431195,1.57635144106191,1.7717175171902,1.59454768657487,1.80249646187312,1.55416483679306,1.15719246865209,0,1.63171705145613,1.47529281905711,1.10374698521893,8.0275294993896,5.15731421005694,2.62295912602681,1.26235463602186,4.41711507182759,2.73307121007647,1.93881057959519,2.38968797952552,0.668396022247182,0.566153061577665,2.02405350837447,2.04579100537918,1.97643888973262,7.06906896127976,0.99358059645788,1.6025904330053,1.79175655288934,1.15479086080775,0,1.94224508923985,2.72091201268276,1.13163047853539,0.885905678642318,1.84461088766356,1.55056975900933,1.81766864738753,1.06949213515416,1.26414703174326,1.05418608574999,0,5.44703369206061,3.6012218806262,2.97524972700335,2.14337035031592,1.59606210278046,4.28085162244969,3.1264313914403,4.87143918583359,3.98941903708308,2.1183207086382,1.10264199027481,0.8244312647074,1.13025098687134,1.14594557363496,1.55184047204077,1.47726809770555,0.582961673259701,5.19190845629427,1.70870880797853,1.44470807574256,3.1483069652851,1.69531611304222,2.7338845544205,2.0590035588587,2.20971958992012,1.39951452323658,1.65839968565309,1.90934123603023,1.73984796469624,1.62655573701479,1.94409613479242,0.627264888043406,3.05707589244649,1.07891477107857,1.1571483801547,0.785267825952089,0.777689839750757,1.24267862617385,3.94585057078933,3.73791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| |||
|short_description=p2@Eif4a1 | |||
}} |
Revision as of 10:27, 6 August 2015
Short description: | p2@Eif4a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Eif4a1_5end |
Coexpression cluster: | NA |
Association with transcript: | -17bp_to_ENSMUST00000123995, ENSMUST00000128519, ENSMUST00000163666_5end |
EntrezGene: | 13681 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.74e-13 | 23 |
neuroblast (sensu Vertebrata) | 5.74e-13 | 23 |
neuron | 4.75e-09 | 33 |
neuronal stem cell | 4.75e-09 | 33 |
neuroblast | 4.75e-09 | 33 |
electrically signaling cell | 4.75e-09 | 33 |
electrically responsive cell | 8.21e-08 | 39 |
electrically active cell | 8.21e-08 | 39 |
ectodermal cell | 2.73e-07 | 44 |
neurectodermal cell | 2.73e-07 | 44 |
neural cell | 2.77e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.05e-20 | 64 |
neural plate | 1.05e-20 | 64 |
presumptive neural plate | 1.05e-20 | 64 |
regional part of nervous system | 1.76e-20 | 54 |
neural tube | 1.33e-19 | 52 |
neural rod | 1.33e-19 | 52 |
future spinal cord | 1.33e-19 | 52 |
neural keel | 1.33e-19 | 52 |
nervous system | 4.13e-19 | 75 |
structure with developmental contribution from neural crest | 2.54e-18 | 92 |
central nervous system | 2.96e-18 | 73 |
brain | 3.61e-17 | 47 |
future brain | 3.61e-17 | 47 |
pre-chordal neural plate | 1.18e-16 | 49 |
regional part of brain | 1.46e-16 | 46 |
anterior neural tube | 7.54e-16 | 40 |
ecto-epithelium | 9.44e-16 | 73 |
gray matter | 1.13e-15 | 34 |
regional part of forebrain | 2.95e-15 | 39 |
forebrain | 2.95e-15 | 39 |
future forebrain | 2.95e-15 | 39 |
ectoderm-derived structure | 1.70e-14 | 95 |
ectoderm | 1.70e-14 | 95 |
presumptive ectoderm | 1.70e-14 | 95 |
brain grey matter | 3.00e-13 | 29 |
regional part of telencephalon | 3.00e-13 | 29 |
telencephalon | 3.00e-13 | 29 |
cerebral cortex | 1.36e-09 | 21 |
cerebral hemisphere | 1.36e-09 | 21 |
pallium | 1.36e-09 | 21 |
regional part of cerebral cortex | 8.36e-08 | 17 |