FFCP PHASE1:Hg19::chr19:12862604..12862625,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54831 | |EntrezGene=54831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17107 | |HGNC=17107 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000553030_5end | |association_with_transcript=0bp_to_ENST00000553030_5end | ||
|cluster_id=chr19:12862604..12862625,+ | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_1_at_BEST2_5end | |description=CAGE_peak_1_at_BEST2_5end | ||
|id=chr19:12862604..12862625,+ | |id=chr19:12862604..12862625,+ | ||
|ontology_enrichment_celltype=CL:0002322!5.69e-23!5;CL:0000540!1.30e-11!6;CL:0000031!1.30e-11!6;CL:0000404!1.30e-11!6;CL:0000047!7.91e-09!8 | |ontology_enrichment_celltype=CL:0002322!5.69e-23!5;CL:0000540!1.30e-11!6;CL:0000031!1.30e-11!6;CL:0000404!1.30e-11!6;CL:0000047!7.91e-09!8 | ||
|ontology_enrichment_celltype_v019=CL:0000540;6.90e-13;6!CL:0000404;6.90e-13;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.50e-13,6;CL:0000031,6.50e-13,6;CL:0000404,6.50e-13,6;CL:0000047,6.34e-10,8 | |||
|ontology_enrichment_development_v019=UBERON:0001045;3.56e-19;1!CL:0000031;6.90e-13;6!UBERON:0003056;1.82e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001155!1.36e-13!9;UBERON:0000059!3.81e-11!11;UBERON:0002372!7.56e-09!1;UBERON:0001961!7.56e-09!1;UBERON:0001744!7.56e-09!1;UBERON:0001735!7.56e-09!1;UBERON:0001154!8.15e-09!1;UBERON:0001153!8.15e-09!1;UBERON:0007029!2.46e-08!1 | |ontology_enrichment_uberon=UBERON:0001155!1.36e-13!9;UBERON:0000059!3.81e-11!11;UBERON:0002372!7.56e-09!1;UBERON:0001961!7.56e-09!1;UBERON:0001744!7.56e-09!1;UBERON:0001735!7.56e-09!1;UBERON:0001154!8.15e-09!1;UBERON:0001153!8.15e-09!1;UBERON:0007029!2.46e-08!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0001155;1.55e-32;9!UBERON:0000059;1.02e-26;11!UBERON:0000160;3.46e-25;17!UBERON:0005409;9.28e-20;22!UBERON:0002372;1.88e-19;1!UBERON:0001961;1.88e-19;1!UBERON:0001744;1.88e-19;1!UBERON:0001042;1.88e-19;1!UBERON:0001735;1.88e-19;1!UBERON:0001154;3.56e-19;1!UBERON:0001153;3.56e-19;1!UBERON:0009854;3.56e-19;1!UBERON:0004921;9.57e-18;33!UBERON:0006562;2.07e-10;2!UBERON:0001555;4.63e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001155,1.27e-32,9;UBERON:0000059,8.65e-27,11;UBERON:0000160,2.98e-25,17;UBERON:0002372,1.88e-19,1;UBERON:0001961,1.88e-19,1;UBERON:0001744,1.88e-19,1;UBERON:0001735,1.88e-19,1;UBERON:0001154,2.25e-19,1;UBERON:0001153,2.25e-19,1;UBERON:0001045,2.25e-19,1;UBERON:0005409,1.52e-17,25 | |||
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|short_description=p1@BEST2 | |short_description=p1@BEST2 | ||
}} | }} |
Latest revision as of 20:25, 15 September 2015
Short description: | p1@BEST2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BEST2_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000553030_5end |
EntrezGene: | BEST2 |
HGNC: | 17107 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.50e-13 | 6 |
neuroblast | 6.50e-13 | 6 |
electrically signaling cell | 6.50e-13 | 6 |
neuronal stem cell | 6.34e-10 | 8 |
Ontology term | p-value | n |
---|---|---|
colon | 1.27e-32 | 9 |
large intestine | 8.65e-27 | 11 |
intestine | 2.98e-25 | 17 |
tonsil | 1.88e-19 | 1 |
mucosa-associated lymphoid tissue | 1.88e-19 | 1 |
lymphoid tissue | 1.88e-19 | 1 |
tonsillar ring | 1.88e-19 | 1 |
vermiform appendix | 2.25e-19 | 1 |
caecum | 2.25e-19 | 1 |
midgut | 2.25e-19 | 1 |
gastrointestinal system | 1.52e-17 | 25 |