FFCP PHASE1:Hg19::chr10:102106933..102106948,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6319 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10571 | |||
|TSSclassifier=strong | |||
|UniProt=O00767 | |||
|association_with_transcript=52bp_to_ENST00000370355_5end | |||
|cluster_id=chr10:102106933..102106948,+ | |||
|coexpression_cluster_id=C2969 | |||
|description=CAGE_peak_4_at_SCD_5end | |||
|id=chr10:102106933..102106948,+ | |||
|ontology_enrichment_celltype=CL:0000066!7.69e-17!254;CL:0000221!2.58e-10!71;CL:0002321!4.98e-10!248;CL:0000220!7.83e-10!246;CL:0000325!3.21e-07!39;CL:0000333!3.44e-07!41;CL:0000223!4.92e-07!59;CL:0000133!7.62e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.16e-15,253;CL:0000221,2.40e-10,72;CL:0002321,6.68e-10,250;CL:0000333,3.22e-07,41;CL:0000223,6.12e-07,58;CL:0000133,8.31e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.11e-08!239;DOID:162!1.14e-08!235;DOID:0050687!1.38e-08!143;DOID:305!2.25e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.88e-08,143;DOID:14566,1.89e-08,239;DOID:162,2.09e-08,235;DOID:305,3.14e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004121!1.05e-19!169;UBERON:0000924!3.98e-19!173;UBERON:0006601!3.98e-19!173;UBERON:0000475!1.05e-17!365;UBERON:0000033!8.84e-15!123;UBERON:0000119!1.00e-14!312;UBERON:0000483!7.74e-14!309;UBERON:0000153!1.54e-12!129;UBERON:0007811!1.54e-12!129;UBERON:0000073!1.75e-12!94;UBERON:0001016!1.75e-12!94;UBERON:0000481!4.04e-11!347;UBERON:0005743!4.76e-11!86;UBERON:0000064!1.31e-10!219;UBERON:0001017!1.47e-10!82;UBERON:0003075!1.45e-09!86;UBERON:0007284!1.45e-09!86;UBERON:0000477!4.93e-09!286;UBERON:0002346!5.04e-09!90;UBERON:0000955!1.19e-08!69;UBERON:0006238!1.19e-08!69;UBERON:0001049!1.55e-07!57;UBERON:0005068!1.55e-07!57;UBERON:0006241!1.55e-07!57;UBERON:0007135!1.55e-07!57;UBERON:0004111!1.99e-07!241;UBERON:0003056!2.01e-07!61;UBERON:0001444!2.80e-07!48;UBERON:0000922!3.90e-07!612;UBERON:0002616!7.04e-07!59;UBERON:0000923!8.73e-07!604;UBERON:0005291!8.73e-07!604;UBERON:0006598!8.73e-07!604;UBERON:0002532!8.73e-07!604;UBERON:0002050!9.08e-07!605;UBERON:0005423!9.08e-07!605 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.17e-18,171;UBERON:0000924,4.17e-18,171;UBERON:0006601,4.17e-18,171;UBERON:0000119,3.70e-14,309;UBERON:0000483,2.76e-13,306;UBERON:0011216,2.90e-13,223;UBERON:0010371,8.47e-13,104;UBERON:0001016,6.20e-12,89;UBERON:0001017,1.67e-10,81;UBERON:0003075,1.76e-09,82;UBERON:0007284,1.76e-09,82;UBERON:0002346,6.38e-09,86;UBERON:0000955,1.37e-08,68;UBERON:0006238,1.37e-08,68;UBERON:0010314,6.34e-08,132;UBERON:0001444,8.39e-08,49;UBERON:0003056,8.54e-08,61;UBERON:0000033,1.00e-07,56;UBERON:0001049,1.80e-07,56;UBERON:0005068,1.80e-07,56;UBERON:0006241,1.80e-07,56;UBERON:0007135,1.80e-07,56 | |||
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| |||
|short_description=p4@SCD | |||
}} |
Latest revision as of 20:28, 15 September 2015
Short description: | p4@SCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCD_5end |
Coexpression cluster: | C2969_Melanocyte_Meningeal_Fibroblast_gall_breast_glioblastoma_melanoma |
Association with transcript: | 52bp_to_ENST00000370355_5end |
EntrezGene: | SCD |
HGNC: | 10571 |
UniProt: | O00767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.16e-15 | 253 |
ectodermal cell | 2.40e-10 | 72 |
embryonic cell | 6.68e-10 | 250 |
migratory neural crest cell | 3.22e-07 | 41 |
endodermal cell | 6.12e-07 | 58 |
neurectodermal cell | 8.31e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.17e-18 | 171 |
ectoderm | 4.17e-18 | 171 |
presumptive ectoderm | 4.17e-18 | 171 |
cell layer | 3.70e-14 | 309 |
epithelium | 2.76e-13 | 306 |
organ system subdivision | 2.90e-13 | 223 |
ecto-epithelium | 8.47e-13 | 104 |
nervous system | 6.20e-12 | 89 |
central nervous system | 1.67e-10 | 81 |
neural plate | 1.76e-09 | 82 |
presumptive neural plate | 1.76e-09 | 82 |
neurectoderm | 6.38e-09 | 86 |
brain | 1.37e-08 | 68 |
future brain | 1.37e-08 | 68 |
structure with developmental contribution from neural crest | 6.34e-08 | 132 |
subdivision of head | 8.39e-08 | 49 |
pre-chordal neural plate | 8.54e-08 | 61 |
head | 1.00e-07 | 56 |
neural tube | 1.80e-07 | 56 |
neural rod | 1.80e-07 | 56 |
future spinal cord | 1.80e-07 | 56 |
neural keel | 1.80e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.88e-08 | 143 |
disease of cellular proliferation | 1.89e-08 | 239 |
cancer | 2.09e-08 | 235 |
carcinoma | 3.14e-07 | 106 |