FFCP PHASE1:Hg19::chr19:12912607..12912621,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7001 | |EntrezGene=7001 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9353 | |HGNC=9353 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000466174_5end | |association_with_transcript=-4bp_to_ENST00000466174_5end | ||
|cluster_id=chr19:12912607..12912621,- | |||
|coexpression_cluster_id=C33 | |||
|description=CAGE_peak_1_at_PRDX2_5end | |description=CAGE_peak_1_at_PRDX2_5end | ||
|id=chr19:12912607..12912621,- | |id=chr19:12912607..12912621,- | ||
|ontology_enrichment_celltype=CL:0002321!3.92e-10!248;CL:0000220!4.20e-10!246;CL:0000066!1.06e-09!254;CL:0000325!3.42e-09!39;CL:0000192!2.42e-08!42;CL:0000514!2.42e-08!42;CL:0000359!6.52e-08!32;CL:0000393!3.78e-07!60;CL:0000211!3.78e-07!60;CL:0000183!4.83e-07!59 | |ontology_enrichment_celltype=CL:0002321!3.92e-10!248;CL:0000220!4.20e-10!246;CL:0000066!1.06e-09!254;CL:0000325!3.42e-09!39;CL:0000192!2.42e-08!42;CL:0000514!2.42e-08!42;CL:0000359!6.52e-08!32;CL:0000393!3.78e-07!60;CL:0000211!3.78e-07!60;CL:0000183!4.83e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.77e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.06e-10,250;CL:0000066,6.88e-10,253;CL:0000359,6.52e-08,32;CL:0000192,7.28e-08,43;CL:0000514,7.28e-08,43;CL:0000393,8.30e-07,61;CL:0000211,8.30e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!4.55e-20!347;UBERON:0000483!4.36e-18!309;UBERON:0000477!1.20e-17!286;UBERON:0000119!1.43e-17!312;UBERON:0004111!3.47e-15!241;UBERON:0000025!1.66e-13!194;UBERON:0000475!6.66e-13!365;UBERON:0000064!2.70e-12!219;UBERON:0003914!2.34e-10!118;UBERON:0003104!1.55e-09!238;UBERON:0009142!1.55e-09!238;UBERON:0000063!9.26e-09!97;UBERON:0000490!1.17e-08!138;UBERON:0000468!3.95e-08!659;UBERON:0001009!5.23e-08!113;UBERON:0002100!1.00e-07!216;UBERON:0002049!1.17e-07!79;UBERON:0007798!1.17e-07!79;UBERON:0000924!1.20e-07!173;UBERON:0006601!1.20e-07!173;UBERON:0001637!1.45e-07!42;UBERON:0003509!1.45e-07!42;UBERON:0004572!1.45e-07!42;UBERON:0005256!1.76e-07!143;UBERON:0001737!2.19e-07!9;UBERON:0002346!2.52e-07!90;UBERON:0004872!2.83e-07!84;UBERON:0009569!3.30e-07!113;UBERON:0004121!3.36e-07!169;UBERON:0001981!3.85e-07!60;UBERON:0007500!3.85e-07!60;UBERON:0004537!3.85e-07!60;UBERON:0006965!3.85e-07!60;UBERON:0000922!4.03e-07!612;UBERON:0004535!4.74e-07!110;UBERON:0000055!6.34e-07!69;UBERON:0003075!7.74e-07!86;UBERON:0007284!7.74e-07!86 | |ontology_enrichment_uberon=UBERON:0000481!4.55e-20!347;UBERON:0000483!4.36e-18!309;UBERON:0000477!1.20e-17!286;UBERON:0000119!1.43e-17!312;UBERON:0004111!3.47e-15!241;UBERON:0000025!1.66e-13!194;UBERON:0000475!6.66e-13!365;UBERON:0000064!2.70e-12!219;UBERON:0003914!2.34e-10!118;UBERON:0003104!1.55e-09!238;UBERON:0009142!1.55e-09!238;UBERON:0000063!9.26e-09!97;UBERON:0000490!1.17e-08!138;UBERON:0000468!3.95e-08!659;UBERON:0001009!5.23e-08!113;UBERON:0002100!1.00e-07!216;UBERON:0002049!1.17e-07!79;UBERON:0007798!1.17e-07!79;UBERON:0000924!1.20e-07!173;UBERON:0006601!1.20e-07!173;UBERON:0001637!1.45e-07!42;UBERON:0003509!1.45e-07!42;UBERON:0004572!1.45e-07!42;UBERON:0005256!1.76e-07!143;UBERON:0001737!2.19e-07!9;UBERON:0002346!2.52e-07!90;UBERON:0004872!2.83e-07!84;UBERON:0009569!3.30e-07!113;UBERON:0004121!3.36e-07!169;UBERON:0001981!3.85e-07!60;UBERON:0007500!3.85e-07!60;UBERON:0004537!3.85e-07!60;UBERON:0006965!3.85e-07!60;UBERON:0000922!4.03e-07!612;UBERON:0004535!4.74e-07!110;UBERON:0000055!6.34e-07!69;UBERON:0003075!7.74e-07!86;UBERON:0007284!7.74e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.19e-07;9!UBERON:0001557;2.19e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,1.16e-18,306;UBERON:0000119,3.92e-18,309;UBERON:0004111,1.84e-15,240;UBERON:0000025,7.34e-14,192;UBERON:0003914,1.16e-10,117;UBERON:0011216,1.98e-09,223;UBERON:0010371,2.13e-08,104;UBERON:0004121,2.27e-08,171;UBERON:0000924,2.27e-08,171;UBERON:0006601,2.27e-08,171;UBERON:0001009,2.69e-08,112;UBERON:0003104,3.07e-08,160;UBERON:0009142,3.07e-08,160;UBERON:0002049,5.30e-08,78;UBERON:0007798,5.30e-08,78;UBERON:0000490,9.46e-08,148;UBERON:0002346,1.12e-07,86;UBERON:0004872,1.35e-07,83;UBERON:0002100,1.45e-07,199;UBERON:0001637,1.45e-07,42;UBERON:0003509,1.45e-07,42;UBERON:0004572,1.45e-07,42;UBERON:0007500,1.57e-07,59;UBERON:0001981,1.57e-07,59;UBERON:0004537,1.57e-07,59;UBERON:0006965,1.57e-07,59;UBERON:0001737,2.19e-07,9;UBERON:0005423,2.52e-07,581;UBERON:0004535,2.55e-07,109;UBERON:0000055,2.84e-07,68;UBERON:0003075,3.52e-07,82;UBERON:0007284,3.52e-07,82;UBERON:0000922,5.28e-07,592;UBERON:0003103,5.87e-07,68;UBERON:0009569,6.23e-07,112;UBERON:0001048,8.82e-07,160 | |||
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| ||
|short_description=p1@PRDX2 | |short_description=p1@PRDX2 | ||
}} | }} |
Latest revision as of 21:15, 15 September 2015
Short description: | p1@PRDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRDX2_5end |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | -4bp_to_ENST00000466174_5end |
EntrezGene: | PRDX2 |
HGNC: | 9353 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.06e-10 | 250 |
epithelial cell | 6.88e-10 | 253 |
vascular associated smooth muscle cell | 6.52e-08 | 32 |
smooth muscle cell | 7.28e-08 | 43 |
smooth muscle myoblast | 7.28e-08 | 43 |
electrically responsive cell | 8.30e-07 | 61 |
electrically active cell | 8.30e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
epithelium | 1.16e-18 | 306 |
cell layer | 3.92e-18 | 309 |
anatomical conduit | 1.84e-15 | 240 |
tube | 7.34e-14 | 192 |
epithelial tube | 1.16e-10 | 117 |
organ system subdivision | 1.98e-09 | 223 |
ecto-epithelium | 2.13e-08 | 104 |
ectoderm-derived structure | 2.27e-08 | 171 |
ectoderm | 2.27e-08 | 171 |
presumptive ectoderm | 2.27e-08 | 171 |
circulatory system | 2.69e-08 | 112 |
mesenchyme | 3.07e-08 | 160 |
entire embryonic mesenchyme | 3.07e-08 | 160 |
vasculature | 5.30e-08 | 78 |
vascular system | 5.30e-08 | 78 |
unilaminar epithelium | 9.46e-08 | 148 |
neurectoderm | 1.12e-07 | 86 |
splanchnic layer of lateral plate mesoderm | 1.35e-07 | 83 |
trunk | 1.45e-07 | 199 |
artery | 1.45e-07 | 42 |
arterial blood vessel | 1.45e-07 | 42 |
arterial system | 1.45e-07 | 42 |
epithelial tube open at both ends | 1.57e-07 | 59 |
blood vessel | 1.57e-07 | 59 |
blood vasculature | 1.57e-07 | 59 |
vascular cord | 1.57e-07 | 59 |
larynx | 2.19e-07 | 9 |
developing anatomical structure | 2.52e-07 | 581 |
cardiovascular system | 2.55e-07 | 109 |
vessel | 2.84e-07 | 68 |
neural plate | 3.52e-07 | 82 |
presumptive neural plate | 3.52e-07 | 82 |
embryo | 5.28e-07 | 592 |
compound organ | 5.87e-07 | 68 |
subdivision of trunk | 6.23e-07 | 112 |
primordium | 8.82e-07 | 160 |