FFCP PHASE1:Hg19::chr12:95467267..95467350,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:95467267..95467350,-
|short_description=p1@NR2C1
|description=CAGE_peak_1_at_NR2C1_5end
|association_with_transcript=0bp_to_ENST00000330677,ENST0000054636...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7181 | |EntrezGene=7181 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7971 | |HGNC=7971 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000330677,ENST00000546367,ENST00000548966,ENST00000549482,ENST00000552861_5end | |||
|cluster_id=chr12:95467267..95467350,- | |||
|description=CAGE_peak_1_at_NR2C1_5end | |||
|id=chr12:95467267..95467350,- | |||
|ontology_enrichment_celltype=CL:0000037!3.41e-08!172;CL:0000566!3.41e-08!172;CL:0000791!9.52e-08!18;CL:0000789!9.52e-08!18;CL:0002420!9.52e-08!18;CL:0002419!9.52e-08!18;CL:0000790!9.52e-08!18;CL:0000838!9.73e-08!52;CL:0000542!1.79e-07!53;CL:0000051!1.79e-07!53;CL:0000988!3.68e-07!182;CL:0002032!9.93e-07!165;CL:0000837!9.93e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.06e-07;18!CL:0000789;1.06e-07;18!CL:0002419;1.06e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.52e-08,18;CL:0000789,9.52e-08,18;CL:0002420,9.52e-08,18;CL:0002419,9.52e-08,18;CL:0000790,9.52e-08,18;CL:0000838,9.73e-08,52;CL:0000037,1.22e-07,168;CL:0000542,1.79e-07,53;CL:0000051,1.79e-07,53;CL:0000988,5.88e-07,177 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.14e-08;82!CL:0000790;1.06e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.95e-30!115;UBERON:0001049!5.88e-23!57;UBERON:0005068!5.88e-23!57;UBERON:0006241!5.88e-23!57;UBERON:0007135!5.88e-23!57;UBERON:0000073!1.65e-22!94;UBERON:0001016!1.65e-22!94;UBERON:0001017!2.11e-22!82;UBERON:0005743!1.47e-21!86;UBERON:0002616!3.67e-20!59;UBERON:0003080!5.87e-20!42;UBERON:0002780!7.25e-20!41;UBERON:0001890!7.25e-20!41;UBERON:0006240!7.25e-20!41;UBERON:0000955!1.32e-19!69;UBERON:0006238!1.32e-19!69;UBERON:0002020!1.89e-16!34;UBERON:0003528!1.89e-16!34;UBERON:0001893!2.64e-16!34;UBERON:0002791!6.80e-16!33;UBERON:0001869!2.68e-15!32;UBERON:0003075!6.77e-15!86;UBERON:0007284!6.77e-15!86;UBERON:0002346!1.13e-14!90;UBERON:0002619!4.18e-13!22;UBERON:0001950!6.03e-12!20;UBERON:0000956!1.44e-11!25;UBERON:0000203!1.44e-11!25;UBERON:0003056!1.21e-10!61;UBERON:0000153!1.90e-08!129;UBERON:0007811!1.90e-08!129;UBERON:0000924!8.69e-08!173;UBERON:0006601!8.69e-08!173;UBERON:0004121!9.74e-08!169;UBERON:0000033!2.88e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.71e-14;41!UBERON:0001890;1.71e-14;41!UBERON:0003528;5.00e-14;34!UBERON:0002020;5.00e-14;34!UBERON:0002791;7.34e-14;32!UBERON:0001893;8.14e-14;34!UBERON:0001869;9.05e-14;32!UBERON:0002619;4.08e-13;22!UBERON:0000073;1.17e-12;53!UBERON:0002616;1.17e-12;53!UBERON:0001950;5.92e-12;20!UBERON:0000956;1.48e-11;25!UBERON:0000203;1.48e-11;25!UBERON:0001017;1.48e-09;75!UBERON:0001016;1.65e-09;83!UBERON:0000955;1.92e-09;68!UBERON:0007023;4.56e-09;114!UBERON:0000922;3.62e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.87e-29,114;UBERON:0001016,4.01e-23,89;UBERON:0001049,7.79e-23,56;UBERON:0005068,7.79e-23,56;UBERON:0006241,7.79e-23,56;UBERON:0007135,7.79e-23,56;UBERON:0001017,3.09e-22,81;UBERON:0000073,3.65e-21,53;UBERON:0002616,3.65e-21,53;UBERON:0002780,7.25e-20,41;UBERON:0001890,7.25e-20,41;UBERON:0003080,7.25e-20,41;UBERON:0006240,7.25e-20,41;UBERON:0000955,1.90e-19,68;UBERON:0006238,1.90e-19,68;UBERON:0003528,1.89e-16,34;UBERON:0002020,1.89e-16,34;UBERON:0001893,2.64e-16,34;UBERON:0002791,2.21e-15,32;UBERON:0001869,2.68e-15,32;UBERON:0003075,1.29e-13,82;UBERON:0007284,1.29e-13,82;UBERON:0002346,2.07e-13,86;UBERON:0002619,4.18e-13,22;UBERON:0001950,6.03e-12,20;UBERON:0000956,1.44e-11,25;UBERON:0000203,1.44e-11,25;UBERON:0003056,6.91e-11,61;UBERON:0011216,1.55e-10,223;UBERON:0010371,2.78e-08,104;UBERON:0004121,5.26e-07,171;UBERON:0000924,5.26e-07,171;UBERON:0006601,5.26e-07,171 | |||
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| ||
|short_description=p1@NR2C1 | |||
}} | }} |
Latest revision as of 02:06, 16 September 2015
Short description: | p1@NR2C1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NR2C1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000330677, ENST00000546367, ENST00000548966, ENST00000549482, ENST00000552861_5end |
EntrezGene: | NR2C1 |
HGNC: | 7971 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 9.52e-08 | 18 |
alpha-beta T cell | 9.52e-08 | 18 |
immature T cell | 9.52e-08 | 18 |
mature T cell | 9.52e-08 | 18 |
immature alpha-beta T cell | 9.52e-08 | 18 |
lymphoid lineage restricted progenitor cell | 9.73e-08 | 52 |
hematopoietic stem cell | 1.22e-07 | 168 |
lymphocyte | 1.79e-07 | 53 |
common lymphoid progenitor | 1.79e-07 | 53 |
hematopoietic cell | 5.88e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.87e-29 | 114 |
nervous system | 4.01e-23 | 89 |
neural tube | 7.79e-23 | 56 |
neural rod | 7.79e-23 | 56 |
future spinal cord | 7.79e-23 | 56 |
neural keel | 7.79e-23 | 56 |
central nervous system | 3.09e-22 | 81 |
regional part of nervous system | 3.65e-21 | 53 |
regional part of brain | 3.65e-21 | 53 |
regional part of forebrain | 7.25e-20 | 41 |
forebrain | 7.25e-20 | 41 |
anterior neural tube | 7.25e-20 | 41 |
future forebrain | 7.25e-20 | 41 |
brain | 1.90e-19 | 68 |
future brain | 1.90e-19 | 68 |
brain grey matter | 1.89e-16 | 34 |
gray matter | 1.89e-16 | 34 |
telencephalon | 2.64e-16 | 34 |
regional part of telencephalon | 2.21e-15 | 32 |
cerebral hemisphere | 2.68e-15 | 32 |
neural plate | 1.29e-13 | 82 |
presumptive neural plate | 1.29e-13 | 82 |
neurectoderm | 2.07e-13 | 86 |
regional part of cerebral cortex | 4.18e-13 | 22 |
neocortex | 6.03e-12 | 20 |
cerebral cortex | 1.44e-11 | 25 |
pallium | 1.44e-11 | 25 |
pre-chordal neural plate | 6.91e-11 | 61 |
organ system subdivision | 1.55e-10 | 223 |
ecto-epithelium | 2.78e-08 | 104 |
ectoderm-derived structure | 5.26e-07 | 171 |
ectoderm | 5.26e-07 | 171 |
presumptive ectoderm | 5.26e-07 | 171 |