FFCP PHASE1:Hg19::chr1:111670644..111670656,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=128338 | |EntrezGene=128338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28769 | |HGNC=28769 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000461449_5end | |association_with_transcript=0bp_to_ENST00000461449_5end | ||
|cluster_id=chr1:111670644..111670656,- | |||
|coexpression_cluster_id=C651 | |||
|description=CAGE_peak_7_at_DRAM2_5end | |description=CAGE_peak_7_at_DRAM2_5end | ||
|id=chr1:111670644..111670656,- | |id=chr1:111670644..111670656,- | ||
|ontology_enrichment_celltype=CL:0000945!7.86e-68!24;CL:0000826!7.86e-68!24;CL:0000236!1.32e-37!14;CL:0000542!8.71e-30!53;CL:0000051!8.71e-30!53;CL:0000838!9.87e-28!52;CL:0002087!1.20e-17!119;CL:0000738!2.40e-17!140;CL:0002031!4.48e-14!124;CL:0000037!1.65e-13!172;CL:0000566!1.65e-13!172;CL:0000988!2.72e-12!182;CL:0002032!1.91e-11!165;CL:0000837!1.91e-11!165;CL:0000785!1.76e-07!2;CL:0000955!1.76e-07!2;CL:0000818!1.76e-07!2;CL:0000954!1.76e-07!2;CL:0000816!1.76e-07!2 | |ontology_enrichment_celltype=CL:0000945!7.86e-68!24;CL:0000826!7.86e-68!24;CL:0000236!1.32e-37!14;CL:0000542!8.71e-30!53;CL:0000051!8.71e-30!53;CL:0000838!9.87e-28!52;CL:0002087!1.20e-17!119;CL:0000738!2.40e-17!140;CL:0002031!4.48e-14!124;CL:0000037!1.65e-13!172;CL:0000566!1.65e-13!172;CL:0000988!2.72e-12!182;CL:0002032!1.91e-11!165;CL:0000837!1.91e-11!165;CL:0000785!1.76e-07!2;CL:0000955!1.76e-07!2;CL:0000818!1.76e-07!2;CL:0000954!1.76e-07!2;CL:0000816!1.76e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.02e-109;24!CL:0000236;3.12e-66;13!CL:0000542;4.05e-33;53!CL:0002087;8.76e-08;104!CL:0000785;2.35e-07;1!CL:0000819;2.35e-07;1!CL:0000946;2.74e-07;1!CL:0000786;2.74e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,8.67e-110,24;CL:0000826,8.67e-110,24;CL:0000236,7.14e-72,14;CL:0000542,2.95e-52,53;CL:0000051,2.95e-52,53;CL:0000838,2.24e-48,52;CL:0002087,2.04e-21,115;CL:0000738,3.03e-19,136;CL:0002031,2.67e-18,120;CL:0000037,1.05e-14,168;CL:0002032,4.86e-14,161;CL:0000837,4.86e-14,161;CL:0000988,1.01e-13,177;CL:0000785,5.53e-13,2;CL:0000955,5.53e-13,2;CL:0000818,5.53e-13,2;CL:0000954,5.53e-13,2;CL:0000816,5.53e-13,2;CL:0000817,5.97e-09,3;CL:0000819,2.35e-07,1;CL:0000946,2.66e-07,1;CL:0000786,2.66e-07,1;CL:0000980,2.66e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;4.05e-33;53!UBERON:0004872;5.57e-14;7!CL:0000954;5.70e-13;2!UBERON:0001045;2.74e-07;1 | |||
|ontology_enrichment_disease=DOID:0060058!2.27e-11!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.73e-15;10!DOID:630;1.38e-07;1!DOID:0050177;1.38e-07;1!DOID:12603;1.38e-07;1!DOID:0050427;1.38e-07;1!DOID:0060073;2.35e-07;1!DOID:8675;2.35e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.73e-15,10;DOID:630,1.25e-07,1;DOID:0050177,1.25e-07,1;DOID:0050427,1.25e-07,1;DOID:12603,1.42e-07,1;DOID:0060073,2.35e-07,1;DOID:8675,2.35e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!4.73e-11!7;UBERON:0002106!1.48e-10!3;UBERON:0004854!1.48e-10!3;UBERON:0009034!1.48e-10!3;UBERON:0002095!1.48e-10!3;UBERON:0004782!1.48e-10!3;UBERON:0003281!1.48e-10!3;UBERON:0009664!1.48e-10!3;UBERON:0002296!1.48e-10!3;UBERON:0005602!1.48e-10!3;UBERON:0001179!1.48e-10!3;UBERON:0006293!1.48e-10!3 | |ontology_enrichment_uberon=UBERON:0004177!4.73e-11!7;UBERON:0002106!1.48e-10!3;UBERON:0004854!1.48e-10!3;UBERON:0009034!1.48e-10!3;UBERON:0002095!1.48e-10!3;UBERON:0004782!1.48e-10!3;UBERON:0003281!1.48e-10!3;UBERON:0009664!1.48e-10!3;UBERON:0002296!1.48e-10!3;UBERON:0005602!1.48e-10!3;UBERON:0001179!1.48e-10!3;UBERON:0006293!1.48e-10!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;6.14e-19;3!UBERON:0004177;1.39e-11;5!UBERON:0005057;1.39e-11;5!UBERON:0001154;2.74e-07;1!UBERON:0001153;2.74e-07;1!UBERON:0009854;2.74e-07;1!UBERON:0002372;3.40e-07;1!UBERON:0000029;3.40e-07;1!UBERON:0001961;3.40e-07;1!UBERON:0001744;3.40e-07;1!UBERON:0001042;3.40e-07;1!UBERON:0001735;3.40e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,6.53e-19,3;UBERON:0004854,6.53e-19,3;UBERON:0009034,6.53e-19,3;UBERON:0002095,6.53e-19,3;UBERON:0004782,6.53e-19,3;UBERON:0003281,6.53e-19,3;UBERON:0009664,6.53e-19,3;UBERON:0002296,6.53e-19,3;UBERON:0005602,6.53e-19,3;UBERON:0001179,6.53e-19,3;UBERON:0006293,6.53e-19,3;UBERON:0004177,2.13e-08,7;UBERON:0005057,2.13e-08,7;UBERON:0000945,2.11e-07,8;UBERON:0010039,2.11e-07,8;UBERON:0001154,3.01e-07,1;UBERON:0001153,3.01e-07,1;UBERON:0001045,3.01e-07,1;UBERON:0000029,3.20e-07,1;UBERON:0002372,3.62e-07,1;UBERON:0001961,3.62e-07,1;UBERON:0001744,3.62e-07,1;UBERON:0001735,3.62e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.6316195519468,19.9504432363368,17.5525042329505,0,0,0.154816123316076,0,0,0,30.2896754268979,5.82893853198428,0,0,0,0,0.447830948479849,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5996244461323,11.4689108365048,14.2321480618169,18.3493995703598,16.4162354684765,12.0698012390441,12.5598525829124,16.2189138271012,3.98449078376614,7.04684627245127,5.73409842187843,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0.238490624305342,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,0,0.238231775457789,0,0.648473311192717,0.540031437238115,0,0,0,0,12.2630095582974,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03912307084262,0,0,8.49285157681379,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83309043480088,0,0,0,0,0,0,4.92627930882298,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.338693328263138,0,0,0,0,0,0.2249738915515,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0,0,2.97699613087171,0,9.37803007532899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,3.68748760178494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0.218559560503957,0,0,0,0,0,0,0,2.81951753939561,3.0939786227317,20.1881134968356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0.129177819672012,0.434523000071005,0,0,0.202117188958219,0.217716747896961,0,2.62673006756891,0.215166616178029,0,0,0,0,0,0,0,0,0,1.00636896795513,12.8227396921293 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.6316195519468,19.9504432363368,17.5525042329505,0,0,0.154816123316076,0,0,0,30.2896754268979,5.82893853198428,0,0,0,0,0.447830948479849,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5996244461323,11.4689108365048,14.2321480618169,18.3493995703598,16.4162354684765,12.0698012390441,12.5598525829124,16.2189138271012,3.98449078376614,7.04684627245127,5.73409842187843,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0.238490624305342,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,0,0.238231775457789,0,0.648473311192717,0.540031437238115,0,0,0,0,12.2630095582974,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03912307084262,0,0,8.49285157681379,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83309043480088,0,0,0,0,0,0,4.92627930882298,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.338693328263138,0,0,0,0,0,0.2249738915515,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0,0,2.97699613087171,0,9.37803007532899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,3.68748760178494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0.218559560503957,0,0,0,0,0,0,0,2.81951753939561,3.0939786227317,20.1881134968356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0.129177819672012,0.434523000071005,0,0,0.202117188958219,0.217716747896961,0,2.62673006756891,0.215166616178029,0,0,0,0,0,0,0,0,0,1.00636896795513,12.8227396921293 | ||
|short_description=p7@DRAM2 | |short_description=p7@DRAM2 | ||
}} | }} |
Latest revision as of 02:28, 16 September 2015
Short description: | p7@DRAM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_DRAM2_5end |
Coexpression cluster: | C651_splenic_CD19_B_xeroderma_plasma_Burkitt_lymphoma |
Association with transcript: | 0bp_to_ENST00000461449_5end |
EntrezGene: | DRAM2 |
HGNC: | 28769 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 8.67e-110 | 24 |
pro-B cell | 8.67e-110 | 24 |
B cell | 7.14e-72 | 14 |
lymphocyte | 2.95e-52 | 53 |
common lymphoid progenitor | 2.95e-52 | 53 |
lymphoid lineage restricted progenitor cell | 2.24e-48 | 52 |
nongranular leukocyte | 2.04e-21 | 115 |
leukocyte | 3.03e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 2.67e-18 | 120 |
hematopoietic stem cell | 1.05e-14 | 168 |
hematopoietic oligopotent progenitor cell | 4.86e-14 | 161 |
hematopoietic multipotent progenitor cell | 4.86e-14 | 161 |
hematopoietic cell | 1.01e-13 | 177 |
mature B cell | 5.53e-13 | 2 |
pre-B-II cell | 5.53e-13 | 2 |
transitional stage B cell | 5.53e-13 | 2 |
small pre-B-II cell | 5.53e-13 | 2 |
immature B cell | 5.53e-13 | 2 |
precursor B cell | 5.97e-09 | 3 |
B-1 B cell | 2.35e-07 | 1 |
antibody secreting cell | 2.66e-07 | 1 |
plasma cell | 2.66e-07 | 1 |
plasmablast | 2.66e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
spleen | 6.53e-19 | 3 |
gastrointestinal system mesentery | 6.53e-19 | 3 |
stomach region | 6.53e-19 | 3 |
mesentery | 6.53e-19 | 3 |
gastrointestinal system serosa | 6.53e-19 | 3 |
mesentery of stomach | 6.53e-19 | 3 |
gut mesentery | 6.53e-19 | 3 |
dorsal mesentery | 6.53e-19 | 3 |
dorsal mesogastrium | 6.53e-19 | 3 |
peritoneal cavity | 6.53e-19 | 3 |
spleen primordium | 6.53e-19 | 3 |
hemopoietic organ | 2.13e-08 | 7 |
immune organ | 2.13e-08 | 7 |
stomach | 2.11e-07 | 8 |
food storage organ | 2.11e-07 | 8 |
vermiform appendix | 3.01e-07 | 1 |
caecum | 3.01e-07 | 1 |
midgut | 3.01e-07 | 1 |
lymph node | 3.20e-07 | 1 |
tonsil | 3.62e-07 | 1 |
mucosa-associated lymphoid tissue | 3.62e-07 | 1 |
lymphoid tissue | 3.62e-07 | 1 |
tonsillar ring | 3.62e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.73e-15 | 10 |
genetic disease | 1.25e-07 | 1 |
monogenic disease | 1.25e-07 | 1 |
xeroderma pigmentosum | 1.25e-07 | 1 |
acute leukemia | 1.42e-07 | 1 |
lymphatic system cancer | 2.35e-07 | 1 |
lymphosarcoma | 2.35e-07 | 1 |