FFCP PHASE1:Hg19::chr11:119056158..119056172,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79849 | |EntrezGene=79849 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19891 | |HGNC=19891 | ||
|TSSclassifier=strong | |||
|UniProt=Q86UT5,B0YJ61 | |UniProt=Q86UT5,B0YJ61 | ||
|association_with_transcript=0bp_to_ENST00000527308,NM_001168468,NM_024791,NR_033122_5end | |association_with_transcript=0bp_to_ENST00000527308,NM_001168468,NM_024791,NR_033122_5end | ||
|cluster_id=chr11:119056158..119056172,+ | |||
|coexpression_cluster_id=C3094 | |coexpression_cluster_id=C3094 | ||
|description=CAGE_peak_2_at_PDZD3_5end | |description=CAGE_peak_2_at_PDZD3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002253;2.05e-07;2!CL:0002535;2.05e-07;2 | |ontology_enrichment_celltype_v019=CL:0002253;2.05e-07;2!CL:0002535;2.05e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.75e-07,2;CL:0002253,2.25e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006242;5.15e-14;1!UBERON:0001045;1.51e-13;1 | |ontology_enrichment_development_v019=UBERON:0006242;5.15e-14;1!UBERON:0001045;1.51e-13;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:299;3.76e-08;25!DOID:4929;1.50e-07;2!DOID:3493;2.05e-07;2 | |ontology_enrichment_disease_v019=DOID:299;3.76e-08;25!DOID:4929;1.50e-07;2!DOID:3493;2.05e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:299,3.91e-08,25;DOID:4929,1.45e-07,2;DOID:3493,1.99e-07,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000160;5.37e-55;17!UBERON:0005409;7.12e-43;22!UBERON:0000059;2.01e-40;11!UBERON:0001155;2.07e-34;9!UBERON:0004921;2.58e-27;33!UBERON:0002108;3.34e-23;4!UBERON:0004907;6.83e-23;5!UBERON:0001154;1.51e-13;1!UBERON:0001153;1.51e-13;1!UBERON:0009854;1.51e-13;1!UBERON:0001052;1.78e-13;4!UBERON:0001555;5.54e-11;54!UBERON:0001007;7.34e-08;81!UBERON:0006955;2.05e-07;2!UBERON:0004801;2.05e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0000160;5.37e-55;17!UBERON:0005409;7.12e-43;22!UBERON:0000059;2.01e-40;11!UBERON:0001155;2.07e-34;9!UBERON:0004921;2.58e-27;33!UBERON:0002108;3.34e-23;4!UBERON:0004907;6.83e-23;5!UBERON:0001154;1.51e-13;1!UBERON:0001153;1.51e-13;1!UBERON:0009854;1.51e-13;1!UBERON:0001052;1.78e-13;4!UBERON:0001555;5.54e-11;54!UBERON:0001007;7.34e-08;81!UBERON:0006955;2.05e-07;2!UBERON:0004801;2.05e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.72e-55,17;UBERON:0000059,1.95e-40,11;UBERON:0005409,8.16e-38,25;UBERON:0001155,2.00e-34,9;UBERON:0002108,3.75e-23,4;UBERON:0004907,6.83e-23,5;UBERON:0001154,1.25e-13,1;UBERON:0001153,1.25e-13,1;UBERON:0001045,1.25e-13,1;UBERON:0001052,1.95e-13,4;UBERON:0004921,1.74e-07,118;UBERON:0006955,1.75e-07,2;UBERON:0004801,1.75e-07,2;UBERON:0001007,2.36e-07,145;UBERON:0001555,2.36e-07,145;UBERON:0007026,2.36e-07,145 | |||
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|short_description=p2@PDZD3 | |short_description=p2@PDZD3 | ||
}} | }} |
Latest revision as of 03:07, 16 September 2015
Short description: | p2@PDZD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PDZD3_5end |
Coexpression cluster: | C3094_rectum_small_colon_Eosinophils_temporal_appendix_CD4 |
Association with transcript: | 0bp_to_ENST00000527308, NM_001168468, NM_024791, NR_033122_5end |
EntrezGene: | PDZD3 |
HGNC: | 19891 |
UniProt: | Q86UT5B0YJ61 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.75e-07 | 2 |
epithelial cell of large intestine | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 5.72e-55 | 17 |
large intestine | 1.95e-40 | 11 |
gastrointestinal system | 8.16e-38 | 25 |
colon | 2.00e-34 | 9 |
small intestine | 3.75e-23 | 4 |
lower digestive tract | 6.83e-23 | 5 |
vermiform appendix | 1.25e-13 | 1 |
caecum | 1.25e-13 | 1 |
midgut | 1.25e-13 | 1 |
rectum | 1.95e-13 | 4 |
subdivision of digestive tract | 1.74e-07 | 118 |
uterine epithelium | 1.75e-07 | 2 |
cervix epithelium | 1.75e-07 | 2 |
digestive system | 2.36e-07 | 145 |
digestive tract | 2.36e-07 | 145 |
primitive gut | 2.36e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 3.91e-08 | 25 |
tubular adenocarcinoma | 1.45e-07 | 2 |
signet ring cell adenocarcinoma | 1.99e-07 | 2 |