FFCP PHASE1:Hg19::chr12:96390063..96390076,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3034 | |EntrezGene=3034 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4806 | |HGNC=4806 | ||
|TSSclassifier=strong | |||
|UniProt=F5H1U5,Q4VB95,P42357 | |UniProt=F5H1U5,Q4VB95,P42357 | ||
|association_with_transcript=0bp_to_ENST00000541929,ENST00000544080,NM_002108,uc001tem.1,uc009zti.1,uc010suw.1,uc010sux.1_5end | |association_with_transcript=0bp_to_ENST00000541929,ENST00000544080,NM_002108,uc001tem.1,uc009zti.1,uc010suw.1,uc010sux.1_5end | ||
|cluster_id=chr12:96390063..96390076,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_HAL_5end | |description=CAGE_peak_3_at_HAL_5end | ||
|id=chr12:96390063..96390076,- | |id=chr12:96390063..96390076,- | ||
|ontology_enrichment_celltype=CL:0002057!3.77e-44!42;CL:0000860!1.87e-40!45;CL:0000766!3.28e-36!76;CL:0000763!9.78e-33!112;CL:0000049!9.78e-33!112;CL:0002009!3.31e-29!65;CL:0002194!1.57e-28!63;CL:0000576!1.57e-28!63;CL:0000040!1.57e-28!63;CL:0000559!1.57e-28!63;CL:0000557!2.70e-27!71;CL:0000839!4.54e-26!70;CL:0000037!1.15e-20!172;CL:0000566!1.15e-20!172;CL:0000988!1.21e-18!182;CL:0000738!1.37e-18!140;CL:0002032!3.06e-18!165;CL:0000837!3.06e-18!165;CL:0002087!9.10e-14!119;CL:0000094!3.45e-12!8;CL:0002031!7.09e-12!124;CL:0000081!1.79e-08!11;CL:0000775!2.60e-07!3 | |ontology_enrichment_celltype=CL:0002057!3.77e-44!42;CL:0000860!1.87e-40!45;CL:0000766!3.28e-36!76;CL:0000763!9.78e-33!112;CL:0000049!9.78e-33!112;CL:0002009!3.31e-29!65;CL:0002194!1.57e-28!63;CL:0000576!1.57e-28!63;CL:0000040!1.57e-28!63;CL:0000559!1.57e-28!63;CL:0000557!2.70e-27!71;CL:0000839!4.54e-26!70;CL:0000037!1.15e-20!172;CL:0000566!1.15e-20!172;CL:0000988!1.21e-18!182;CL:0000738!1.37e-18!140;CL:0002032!3.06e-18!165;CL:0000837!3.06e-18!165;CL:0002087!9.10e-14!119;CL:0000094!3.45e-12!8;CL:0002031!7.09e-12!124;CL:0000081!1.79e-08!11;CL:0000775!2.60e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000094;1.74e-28;8!CL:0000081;1.38e-20;11!CL:0000775;6.18e-20;3!CL:0000771;4.40e-14;2!CL:0000313;1.74e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,1.51e-28,8;CL:0000081,1.24e-20,11;CL:0000775,5.99e-20,3;CL:0000771,3.99e-14,2;CL:0000313,1.39e-07,1;CL:0000763,4.03e-07,108;CL:0000049,4.03e-07,108;CL:0000766,7.34e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2152;1.74e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.39e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!9.94e-36!102;UBERON:0003061!9.94e-36!102;UBERON:0002193!1.40e-32!112;UBERON:0002405!3.57e-27!115;UBERON:0002371!2.09e-24!80;UBERON:0001474!6.60e-22!86;UBERON:0004765!5.40e-17!101;UBERON:0001434!5.40e-17!101;UBERON:0000178!5.56e-14!15;UBERON:0000179!5.56e-14!15;UBERON:0000463!5.56e-14!15;UBERON:0003081!3.31e-11!216;UBERON:0000926!4.25e-07!448;UBERON:0004120!4.25e-07!448;UBERON:0006603!4.25e-07!448 | |ontology_enrichment_uberon=UBERON:0002390!9.94e-36!102;UBERON:0003061!9.94e-36!102;UBERON:0002193!1.40e-32!112;UBERON:0002405!3.57e-27!115;UBERON:0002371!2.09e-24!80;UBERON:0001474!6.60e-22!86;UBERON:0004765!5.40e-17!101;UBERON:0001434!5.40e-17!101;UBERON:0000178!5.56e-14!15;UBERON:0000179!5.56e-14!15;UBERON:0000463!5.56e-14!15;UBERON:0003081!3.31e-11!216;UBERON:0000926!4.25e-07!448;UBERON:0004120!4.25e-07!448;UBERON:0006603!4.25e-07!448 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.73e-19;15!UBERON:0000179;2.73e-19;15!UBERON:0000463;2.73e-19;15!UBERON:0002107;1.44e-08;19!UBERON:0006925;1.44e-08;19!UBERON:0002390;4.19e-08;32!UBERON:0007029;8.56e-08;1!UBERON:0004911;1.74e-07;1!UBERON:0002134;2.71e-07;1!UBERON:0005208;2.71e-07;1!UBERON:0004145;2.71e-07;1!UBERON:0005946;2.71e-07;1!UBERON:0005965;2.71e-07;1!UBERON:0002078;2.71e-07;1!UBERON:0002365;3.47e-07;31!UBERON:0002330;3.47e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.28e-19,15;UBERON:0000179,3.28e-19,15;UBERON:0000463,3.28e-19,15;UBERON:0002107,1.44e-08,19;UBERON:0006925,1.44e-08,19;UBERON:0008836,1.44e-08,19;UBERON:0007029,9.44e-08,1;UBERON:0004911,1.39e-07,1;UBERON:0008835,2.33e-07,22;UBERON:0003894,2.33e-07,22;UBERON:0002134,2.63e-07,1;UBERON:0005208,2.63e-07,1;UBERON:0005946,2.63e-07,1;UBERON:0005965,2.63e-07,1;UBERON:0002078,2.63e-07,1;UBERON:0002365,3.89e-07,31;UBERON:0002330,3.89e-07,31;UBERON:0009854,5.01e-07,23 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93364276848904,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0.553995408531877,0,0.217010870715852,0,0,0,0.436194716338694,0.755751887377619,1.4555043671269,0.464858073811369,0,0.929119112685311,0.575384784644301,0.512321413058201,0.945928919554341,0.344745680736619,1.93645405075148,0,0.564727018627814,0,1.12361742222542,0.612167784741805,0.320929027076094,0.639337125799041,0.659702600373432,0.797854630486527,0.852449501065388,0.290209238628584,0.56738522469114,0,0.251248665256743,0.521482918420201,2.38907729175628,0.605399502633369,0.368277635987565,0.632924774881769,0,0.637812899895131,0,0.112328631146495,0.300353785683013,0.16072558669708,0.855038231223746,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5424333948851,27.1446184903828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,136.895437607577,14.7424082501644,90.3908557222548,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4860983352606,5.9832291840805,12.4324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.971356805397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.0985899328292,0,0,0,0,2.02979043692868,0,2.27858874869665,0.952927101831156,2.46817363851717,3.24236655596359,1.08006287447623,3.17250070517708,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0.280797178113459,0,0,2.50634477090067,0,0.321176150207399,0.201799707191048,2.12923118845163,0,0,0.223676107892416,0.166849141711909,1.17232857241224,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0.332423363800313,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43574604915363,0,0.429226048136571,0,0,0,0,0.86661500537946,0.576911008668165,0.606631894687664,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0.0788057072991982,0.104909176269996,0,7.17149357331379,0,0,0,0,0,0,0,0,0,0,0,34.8794316153836,43.727273341033,0,0,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0.919036730290385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0.91064876540519,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,10.3688949272114,0,0,0,0,0,0,0,2.9082412267426,0,0,0,0,0,10.1999308542419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966868319603658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0.217716747896961,0,0.202056159043763,0.358611026963382,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93364276848904,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0.553995408531877,0,0.217010870715852,0,0,0,0.436194716338694,0.755751887377619,1.4555043671269,0.464858073811369,0,0.929119112685311,0.575384784644301,0.512321413058201,0.945928919554341,0.344745680736619,1.93645405075148,0,0.564727018627814,0,1.12361742222542,0.612167784741805,0.320929027076094,0.639337125799041,0.659702600373432,0.797854630486527,0.852449501065388,0.290209238628584,0.56738522469114,0,0.251248665256743,0.521482918420201,2.38907729175628,0.605399502633369,0.368277635987565,0.632924774881769,0,0.637812899895131,0,0.112328631146495,0.300353785683013,0.16072558669708,0.855038231223746,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5424333948851,27.1446184903828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,136.895437607577,14.7424082501644,90.3908557222548,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4860983352606,5.9832291840805,12.4324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.971356805397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.0985899328292,0,0,0,0,2.02979043692868,0,2.27858874869665,0.952927101831156,2.46817363851717,3.24236655596359,1.08006287447623,3.17250070517708,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0.280797178113459,0,0,2.50634477090067,0,0.321176150207399,0.201799707191048,2.12923118845163,0,0,0.223676107892416,0.166849141711909,1.17232857241224,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0.332423363800313,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43574604915363,0,0.429226048136571,0,0,0,0,0.86661500537946,0.576911008668165,0.606631894687664,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0.0788057072991982,0.104909176269996,0,7.17149357331379,0,0,0,0,0,0,0,0,0,0,0,34.8794316153836,43.727273341033,0,0,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0.919036730290385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0.91064876540519,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,10.3688949272114,0,0,0,0,0,0,0,2.9082412267426,0,0,0,0,0,10.1999308542419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966868319603658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0.217716747896961,0,0.202056159043763,0.358611026963382,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p3@HAL | |short_description=p3@HAL | ||
}} | }} |
Latest revision as of 03:11, 16 September 2015
Short description: | p3@HAL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HAL_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000541929, ENST00000544080, NM_002108, uc001tem.1, uc009zti.1, uc010suw.1, uc010sux.1_5end |
EntrezGene: | HAL |
HGNC: | 4806 |
UniProt: | F5H1U5Q4VB95P42357 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 1.51e-28 | 8 |
blood cell | 1.24e-20 | 11 |
neutrophil | 5.99e-20 | 3 |
eosinophil | 3.99e-14 | 2 |
serous secreting cell | 1.39e-07 | 1 |
myeloid cell | 4.03e-07 | 108 |
common myeloid progenitor | 4.03e-07 | 108 |
myeloid leukocyte | 7.34e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
blood | 3.28e-19 | 15 |
haemolymphatic fluid | 3.28e-19 | 15 |
organism substance | 3.28e-19 | 15 |
liver | 1.44e-08 | 19 |
digestive gland | 1.44e-08 | 19 |
liver bud | 1.44e-08 | 19 |
surface | 9.44e-08 | 1 |
epithelium of female gonad | 1.39e-07 | 1 |
hepatic diverticulum | 2.33e-07 | 22 |
liver primordium | 2.33e-07 | 22 |
tricuspid valve | 2.63e-07 | 1 |
right atrium valve | 2.63e-07 | 1 |
outflow tract of atrium | 2.63e-07 | 1 |
outflow part of right atrium | 2.63e-07 | 1 |
right cardiac atrium | 2.63e-07 | 1 |
exocrine gland | 3.89e-07 | 31 |
exocrine system | 3.89e-07 | 31 |
digestive tract diverticulum | 5.01e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.39e-07 | 1 |