FFCP PHASE1:Hg19::chr11:12030905..12030916,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27122 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2893 | |||
|TSSclassifier=strong | |||
|UniProt=F8W7H2,Q9UBP4 | |||
|association_with_transcript=0bp_to_ENST00000326914,ENST00000326932,NM_013253,uc001mjw.2,uc001mjx.2_5end | |||
|cluster_id=chr11:12030905..12030916,- | |||
|description=CAGE_peak_6_at_DKK3_5end | |||
|id=chr11:12030905..12030916,- | |||
|ontology_enrichment_celltype=CL:0000055!2.41e-13!180;CL:0000057!4.23e-10!75;CL:0000222!1.14e-08!119;CL:0000220!1.87e-08!246;CL:0002321!2.59e-08!248;CL:0000192!4.25e-07!42;CL:0000514!4.25e-07!42;CL:0000183!5.80e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.32e-09,76;CL:0000222,4.82e-09,121;CL:0000192,2.27e-07,43;CL:0000514,2.27e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000483!2.62e-26!309;UBERON:0000119!3.07e-26!312;UBERON:0000475!4.33e-25!365;UBERON:0004121!9.94e-25!169;UBERON:0000477!3.69e-23!286;UBERON:0000033!9.59e-23!123;UBERON:0000924!1.02e-22!173;UBERON:0006601!1.02e-22!173;UBERON:0004111!1.06e-22!241;UBERON:0000025!2.92e-22!194;UBERON:0003075!8.62e-22!86;UBERON:0007284!8.62e-22!86;UBERON:0000153!7.27e-21!129;UBERON:0007811!7.27e-21!129;UBERON:0000064!7.37e-21!219;UBERON:0002346!4.66e-19!90;UBERON:0000467!5.45e-19!625;UBERON:0000468!6.20e-19!659;UBERON:0000480!1.03e-18!626;UBERON:0001049!3.45e-18!57;UBERON:0005068!3.45e-18!57;UBERON:0006241!3.45e-18!57;UBERON:0007135!3.45e-18!57;UBERON:0000481!3.48e-18!347;UBERON:0000955!5.91e-18!69;UBERON:0006238!5.91e-18!69;UBERON:0005743!1.70e-17!86;UBERON:0001017!1.98e-17!82;UBERON:0002616!3.40e-17!59;UBERON:0000073!1.67e-16!94;UBERON:0001016!1.67e-16!94;UBERON:0003056!9.26e-14!61;UBERON:0002020!1.31e-12!34;UBERON:0003528!1.31e-12!34;UBERON:0001893!2.85e-12!34;UBERON:0002791!7.84e-12!33;UBERON:0002780!8.87e-12!41;UBERON:0001890!8.87e-12!41;UBERON:0006240!8.87e-12!41;UBERON:0001869!1.14e-11!32;UBERON:0004872!1.15e-11!84;UBERON:0000062!1.72e-11!511;UBERON:0000922!2.44e-11!612;UBERON:0002050!3.01e-11!605;UBERON:0005423!3.01e-11!605;UBERON:0002049!4.15e-11!79;UBERON:0007798!4.15e-11!79;UBERON:0003080!4.71e-11!42;UBERON:0000923!5.26e-11!604;UBERON:0005291!5.26e-11!604;UBERON:0006598!5.26e-11!604;UBERON:0002532!5.26e-11!604;UBERON:0003914!1.80e-09!118;UBERON:0000956!1.95e-09!25;UBERON:0000203!1.95e-09!25;UBERON:0001009!3.97e-09!113;UBERON:0003076!4.92e-09!15;UBERON:0003057!4.92e-09!15;UBERON:0000055!5.59e-09!69;UBERON:0001981!1.29e-08!60;UBERON:0007500!1.29e-08!60;UBERON:0004537!1.29e-08!60;UBERON:0006965!1.29e-08!60;UBERON:0003103!1.73e-08!69;UBERON:0002619!1.99e-08!22;UBERON:0004535!5.17e-08!110;UBERON:0000914!5.31e-08!83;UBERON:0002329!5.31e-08!83;UBERON:0003077!5.31e-08!83;UBERON:0003059!5.31e-08!83;UBERON:0007282!5.31e-08!83;UBERON:0009618!5.31e-08!83;UBERON:0007285!5.31e-08!83;UBERON:0001950!6.52e-08!20;UBERON:0007023!7.51e-08!115;UBERON:0005256!1.27e-07!143;UBERON:0004733!2.36e-07!12;UBERON:0002028!2.36e-07!12;UBERON:0007277!2.36e-07!12;UBERON:0004732!3.48e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.96e-11;53!UBERON:0002616;1.96e-11;53!UBERON:0001893;2.27e-11;34!UBERON:0003528;2.90e-11;34!UBERON:0002020;2.90e-11;34!UBERON:0002791;4.29e-11;32!UBERON:0001869;4.73e-11;32!UBERON:0000956;3.92e-10;25!UBERON:0000203;3.92e-10;25!UBERON:0000955;1.63e-09;68!UBERON:0002780;2.60e-09;41!UBERON:0001890;2.60e-09;41!UBERON:0002619;3.73e-09;22!UBERON:0001017;1.06e-08;75!UBERON:0001950;1.30e-08;20!UBERON:0004733;3.92e-08;12!UBERON:0002028;3.92e-08;12!UBERON:0004732;6.16e-08;13!UBERON:0010314;1.41e-07;132!UBERON:0001016;2.55e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.22e-29,132;UBERON:0003075,4.44e-26,82;UBERON:0007284,4.44e-26,82;UBERON:0000483,1.53e-24,306;UBERON:0010371,3.33e-24,104;UBERON:0000119,4.37e-24,309;UBERON:0004121,4.88e-24,171;UBERON:0000924,4.88e-24,171;UBERON:0006601,4.88e-24,171;UBERON:0000025,5.22e-24,192;UBERON:0002346,2.25e-23,86;UBERON:0004111,1.33e-22,240;UBERON:0001049,1.17e-21,56;UBERON:0005068,1.17e-21,56;UBERON:0006241,1.17e-21,56;UBERON:0007135,1.17e-21,56;UBERON:0000955,9.07e-21,68;UBERON:0006238,9.07e-21,68;UBERON:0000073,8.47e-20,53;UBERON:0002616,8.47e-20,53;UBERON:0001017,9.18e-20,81;UBERON:0001016,7.08e-18,89;UBERON:0003056,1.09e-16,61;UBERON:0003528,3.23e-14,34;UBERON:0002020,3.23e-14,34;UBERON:0001893,7.87e-14,34;UBERON:0002780,2.04e-13,41;UBERON:0001890,2.04e-13,41;UBERON:0003080,2.04e-13,41;UBERON:0006240,2.04e-13,41;UBERON:0001869,3.76e-13,32;UBERON:0002791,4.95e-13,32;UBERON:0000956,1.25e-10,25;UBERON:0000203,1.25e-10,25;UBERON:0004872,5.18e-10,83;UBERON:0003076,5.34e-10,15;UBERON:0003057,5.34e-10,15;UBERON:0002049,5.52e-10,78;UBERON:0007798,5.52e-10,78;UBERON:0005423,1.23e-09,581;UBERON:0003914,1.25e-09,117;UBERON:0002619,1.72e-09,22;UBERON:0002050,2.67e-09,564;UBERON:0000923,5.85e-09,560;UBERON:0010316,5.85e-09,560;UBERON:0005291,5.85e-09,560;UBERON:0006598,5.85e-09,560;UBERON:0010317,5.85e-09,560;UBERON:0002532,5.85e-09,560;UBERON:0001009,6.39e-09,112;UBERON:0001950,6.54e-09,20;UBERON:0000922,9.20e-09,592;UBERON:0004733,4.20e-08,12;UBERON:0002028,4.20e-08,12;UBERON:0007277,4.20e-08,12;UBERON:0011216,5.05e-08,223;UBERON:0000055,5.07e-08,68;UBERON:0004732,6.51e-08,13;UBERON:0007500,9.26e-08,59;UBERON:0001981,9.26e-08,59;UBERON:0004537,9.26e-08,59;UBERON:0006965,9.26e-08,59;UBERON:0004535,9.73e-08,109;UBERON:0003103,4.33e-07,68;UBERON:0007023,8.59e-07,114 | |||
|phase1_expression=1.09007027562334,3.21150785836475,1.69145284915165,6.00439790118782,1.78784437770915,3.48935409640147,0,1.26343974685366,0,1.22866968250754,1.39560233594486,5.67947567538448,5.53910654279752,0.990130823680373,7.29074226601415,1.34465029290355,1.20538905604795,2.19093027116212,1.95173119516203,2.95490539384291,6.73202281106035,2.19418305034661,4.86601178122796,2.87436292653057,3.89182182743889,0,0,0,0,0,0.154816123316076,1.83884244895785,4.2168828628955,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,2.30152611318355,0,0.50133791063589,1.88300474649071,0.795285947051099,0.486634870302636,3.49778823507051,1.33037638477538,4.3917392846563,1.11332214173056,2.18577172975525,2.22470665670658,0,0,0,0,0,0,1.59009925893364,4.30117297553062,0.347140501607594,3.39184765154406,5.45349267072878,1.37559020970034,3.13492449805216,2.84258435086262,2.49036383880697,2.00832367658802,6.0424397566372,3.04108842287405,5.6134273236079,2.20597848207521,1.62028389576352,1.51809538082936,2.46982309888787,1.35133776579987,0,2.84779697870439,3.84723662253855,0,0,3.05265836499774,8.94549513051573,0.886413581652058,0.662045904066094,1.43418310374407,1.77334191099179,2.80338800071154,4.2699598291882,7.4000264525148,2.48968828319813,3.3677668017422,2.7788523529288,1.51357427644931,3.45705554687999,1.17160715916898,0.624320153660641,0.570471821544449,2.69007624993242,2.81842796745036,1.29498355494505,1.12360645361799,3.47062091133319,0.61417158655884,4.75298593408521,7.12801714369232,3.95627086845691,0.910161361938026,1.43723628363248,2.18836948140286,1.00094815897571,3.87889761677856,7.90159717585508,3.98434134538726,6.76071265079686,1.70148274740032,2.15267562826634,4.27114777637135,0.847727604638247,9.00273288253207,5.04957393268351,1.8034837803194,7.44467425326359,2.19409231913646,2.63079913935236,2.27190396819703,1.38074847963449,0.969876340912871,10.2952781829818,7.55640736707302,3.22165125389926,1.15956511897978,3.00020732649918,4.58887352622406,0.121973706129595,0.397589304964456,0.348581828608555,0.207322110030741,0,0.36497735907583,4.69348596989448,5.78916844373597,2.76269842704961,0.928735856063958,2.88751792667834,0.118306800039844,0.505754070234305,0,0.220587945464788,0,0,0.539325232640658,0.98110732562673,0,2.21446636387394,1.40241773803446,2.8810180793198,4.41026134156626,0,0,0,0,0,3.94605963686609,1.75600456653801,4.49607013030478,0.904760751704678,2.77765335475589,2.6064664424826,5.19967392639789,4.3299402607582,10.4337364477569,5.04857385214033,1.73239737313289,1.85194205030644,2.47330397904978,0,0,0,0,0,0.93733833986777,2.01578553838631,1.84307626415102,0.626909658919938,0.581267877027924,4.60059214998253,0,0,0,0,0,0,0.381988425558278,0,0,1.13110241973656,0,0.571652865261156,0.672786506072164,1.74384027533312,0.1466765716419,2.19761916788222,0,0.845302752556,6.11657668145202,8.32059495290929,0.771622122786426,1.41849132023278,0.532844358032199,2.7165818795048,0,0,1.95441710576241,3.909311436168,0.791951872933429,5.72734816413214,8.71533458600294,2.7992437530976,0,0,0,1.19812427745791,0,0,0.579125226670317,0,1.07436577943937,0,0.197030760201927,0,0,0,0,1.54657762555539,1.84267891867784,1.27587750330633,0,0,0,3.80343624329334,4.00136416847742,4.34024037919577,6.23912584592421,5.53129865271201,5.83498935625558,3.04567678981054,4.21324539618807,9.09630016223939,2.0694614258501,1.32845119707087,5.16233671916769,4.25729710893606,2.74121620447837,3.43143423810856,0,0,0,2.12189300012382,3.32870879020994,7.25736703991233,0.496215615637554,2.91577749247319,4.77122160536225,1.79394808957981,1.53512174720011,3.86049410744658,2.96836132889982,0.771048469013278,0.355123450626254,0.0821271560138091,1.55776328755086,0,0.120859449591622,2.80709058424599,0.276242966807689,1.14814448164607,0.728364672026868,7.34296723772775,2.70719767744447,3.00359814707218,3.92174884588428,1.46139224653261,1.05551628892876,7.96133688496276,2.72149928442425,3.02282282542995,3.08454505380579,5.68987518842091,4.51520796469368,2.03901018436031,4.15538004464362,2.23874754722178,0,0,3.33385162651306,1.64007322849853,0,0.721287081534056,0.732555718546747,0.330037999682352,2.29706215198469,1.95018073810956,1.6068392984416,1.35339005608971,0.154048617114644,0.614014698904518,1.7918754422989,0.537101224341368,1.16013355131383,0.596586391912706,0.801288320820636,0.330569830721956,3.2672311452068,0.765676274967505,1.4162089319777,2.78907329578371,2.83331112147576,6.970372701606,3.38836938193698,1.59691809095107,0,3.7064843820784,3.43499728180779,0.372158369359667,2.53103539774981,5.52827562379092,5.37385361753801,1.71175595213568,1.27281299170375,0.78494864019923,2.33834194858309,1.37268514868027,1.88499843753098,1.41527737101321,0,2.94880919367287,5.36397112998549,4.87426979262569,1.05650146756755,3.54899769660763,5.09059555033366,3.39024349860728,1.10273068709225,1.99031692572366,1.75380354101505,3.47265320560013,3.9353685122798,2.63783490051515,0.30982349809975,5.63391205064483,3.15504974848913,5.50194629673478,3.21003946333125,1.41904425628239,1.68886108238131,0,1.13841952129715,1.39973888097993,1.44333169088268,2.01090682660736,3.26672954583968,0.941438007767792,1.29151611801369,3.36942951335251,1.7737206141467,0.689170200620878,0,0,0,0,0,0,0,0,0.106824071127473,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.40107902686839,9.50286978664444,13.8222315944654,5.96488588659779,7.59614848616769,1.22439575525196,0,0,14.345855154077,0,0.503865495708552,0.818149460017238,0,4.3545542272653,0,0,0,1.08507746200627,0,0,6.78532922266653,4.17456441728331,7.98455192004777,0,0,0,0.682760689712998,0,0,0,0,1.04174996959975,2.65722415744152,3.73848959738765,3.05163472634166,9.17807857429164,16.2551190424451,3.51016635446356,0,0,1.00035336054936,0.113942055847001,0.46112780877612,0,2.39024218228418,4.14701507651495,5.49585560411174,0,0,0,0,0,0,0,0,0,2.95397290339238,1.79556088975062,0.282706142867882,0.216388639742091,0.995261931078505,0.973033209536731,0,0,0,0,3.16785325009182,0,2.34264445725339,0,0.19566461893209,0,0.394584402849391,0,1.53036380815245,1.32691817219825,0,0,0,0.661983911750998,0.313932918407225,0,0.569219092059585,0,0.867798691675654,0.783939179315021,0,0.34945333648406,3.26773461696071,0,0,0,0.193978032976839,0.441280633457501,3.38971111170799,2.60379656828827,0,3.8619585533086,0,1.84365286578528,1.06726497369676,2.59752492456769,0,0.229073192331831,0,0,1.86378803348149,0,5.02845562472372,3.66109962093166,1.01998217636322,1.15580235960608,1.80126086612937,6.84526894459965,0,4.72741985561953,0,4.18923601908381,3.43740636017525,0.717873024576814,6.38972801596772,11.5891032996874,9.59637267000052,4.90439349153102,14.7722952252385,0,0,0,0,0,0,1.59045937961861,6.6739668994672,0,0.550157746388935,0.83088067605837,0,0,4.13096985274568,0,0.630445658393585,0.83927341015997,4.9632158164121,0,0.383830394638891,15.0086018538407,13.2418394073086,0.76280561296425,2.71499800876856,0,3.5924609612035,2.39460383124975,0,0.681552087141687,0,0,0,5.94701599263133,5.68600187493567,1.36869470307464,0,1.38823636338003,0.628817220398664,2.07119527673598,0.496166021811951,0,0,0,0,0,0,0,0.471162288750703,1.77213635993397,4.14889300666675,6.50992839673799,4.0138643698305,9.65082748370615,7.69995396473155,0,3.7494122388632,0,0,3.2937214757744,0,0,0.895528817321244,0.701139929541673,0,2.65164207385125,2.26411111577318,1.77962244319307,6.86520205190771,0.907385542579434,0.621748802331122,2.06997209985487,2.38945150745554,3.14862178514523,2.79473322377267,1.65882483136342,3.98762571836992,0.521745061811734,5.55953153289708,3.04644169735036,0.813741466409323,3.09142720644351,4.29642228169954,4.17630383890644,3.98095888698616,4.00027764663154,1.37358282073117,1.6837474438296,5.04739592914604,12.3276691460674,1.07220795687463,0,0,2.08370226891451,1.22368352253234,1.25362188757041,0,0,1.94358060540469,0,1.52048196587765,0,0.690860683462397,1.51929978088691,5.25382057376577,0,0,0,2.6208787907713,5.16123108382811,1.90180911022764,0,0,0,6.2426754892352,0,0.559518030877778,1.24415452006595,0.383683113910955,1.50954735955355,0.157265941855896,1.20130602011215,0,0,0,0,2.22603045457393,0,0,7.75887076119505,2.1437183414724,2.95454435443714,2.8339315265117,5.58718506700029,6.97395638418567,4.03314713954749,4.91016492495947,5.49017195148294,1.42769420259154,0.687034029507179,0.11796972334774,0.550285795565037,0.346576998451015,0,2.0710797781803,0.198916222116275,0.526472298444801,0,0,0,0.818859587550484,0.443568258651136,4.66009333866923,1.56215619722769,5.1671699125296,5.96108615822724,2.7348740450911,0,0,0,0.894336993477167,0,1.3451348888753,1.82089681270989,1.13831095675649,0.79832133146375,0.115233987555779,3.94422421706063,8.22433769019664,4.40677582871089,0.709163045303809,0,2.35479278551542,5.18481446722806,0,6.39211104356647,0,1.9110067515482,3.85973338553944,0,0.116241425368125,0.173858272302579,4.00855682365126,1.24329698497822,0.17071847709395,0,0,1.77498001095848,0.681707238073262,1.27016115057279,0,2.48165108531456,0.955538938977433,0.335566295393377,0,0,0,0.205325613712494,1.1598144313382,1.94284397223656,0.467878926924211,1.39265542612958,0.475680363110274,0.22589216407792,0,0.150962843566674,0.771741581079447,0.874238242015829,0,2.20633489578515,0.707029641304878,4.3187862765288,10.0995776111209,6.7624916413344,5.26774055532232,0.375935671919414,1.16024198352439,0,0.178553938605658,0,0,2.19100916473955,0,3.72682916193773,0,4.55542984279128,6.10890966476528,0,2.97596014533401,6.47045880083986,1.29787968637137,0.883164973845552,0.655593431782173,1.77377901416012,1.01988829741982,0.534434810531121,0.18378979906969,0,1.66713136080127,0.267964130156178,2.48750831837634,2.68925789240928,0.639701945702943,2.85677317756488,0,0.186224142887574,6.95217547999803,0.190941474834495,0.404234377916439,0.217716747896961,1.71116650542641,0.336760265072938,0.286888821570705,3.65926392200615,0.162806537221949,0.106727345877715,0,0.718601616852695,4.69281884806909,0.855690109280065,3.25516942652591,0,1.40891655513718,0 | |||
|short_description=p6@DKK3 | |||
}} |
Latest revision as of 05:49, 16 September 2015
Short description: | p6@DKK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_DKK3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000326914, ENST00000326932, NM_013253, uc001mjw.2, uc001mjx.2_5end |
EntrezGene: | DKK3 |
HGNC: | 2893 |
UniProt: | F8W7H2Q9UBP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.32e-09 | 76 |
mesodermal cell | 4.82e-09 | 121 |
smooth muscle cell | 2.27e-07 | 43 |
smooth muscle myoblast | 2.27e-07 | 43 |