FFCP PHASE1:Hg19::chr12:112450928..112450976,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89894 | |EntrezGene=89894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25084 | |HGNC=25084 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NCL8,Q9BWF8 | |UniProt=Q8NCL8,Q9BWF8 | ||
|association_with_transcript=0bp_to_ENST00000354825,uc001ttc.1,uc001ttd.1,uc001tte.1,uc001ttf.1,uc001ttg.1,uc001tth.1,uc001tti.1_5end | |association_with_transcript=0bp_to_ENST00000354825,uc001ttc.1,uc001ttd.1,uc001tte.1,uc001ttf.1,uc001ttg.1,uc001tth.1,uc001tti.1_5end | ||
|cluster_id=chr12:112450928..112450976,- | |||
|description=CAGE_peak_1_at_TMEM116_5end | |description=CAGE_peak_1_at_TMEM116_5end | ||
|id=chr12:112450928..112450976,- | |id=chr12:112450928..112450976,- | ||
|ontology_enrichment_celltype=CL:0000542!1.50e-12!53;CL:0000051!1.50e-12!53;CL:0000838!3.39e-12!52;CL:0000791!8.56e-09!18;CL:0000789!8.56e-09!18;CL:0002420!8.56e-09!18;CL:0002419!8.56e-09!18;CL:0000790!8.56e-09!18;CL:0000084!6.12e-08!25;CL:0000827!6.12e-08!25 | |ontology_enrichment_celltype=CL:0000542!1.50e-12!53;CL:0000051!1.50e-12!53;CL:0000838!3.39e-12!52;CL:0000791!8.56e-09!18;CL:0000789!8.56e-09!18;CL:0002420!8.56e-09!18;CL:0002419!8.56e-09!18;CL:0000790!8.56e-09!18;CL:0000084!6.12e-08!25;CL:0000827!6.12e-08!25 | ||
|ontology_enrichment_celltype_v019=CL:0000791;8.44e-09;18!CL:0000789;8.44e-09;18!CL:0002419;8.44e-09;18!CL:0000542;6.19e-08;53!CL:0000084;7.14e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.50e-12,53;CL:0000051,1.50e-12,53;CL:0000838,3.38e-12,52;CL:0000791,8.56e-09,18;CL:0000789,8.56e-09,18;CL:0002420,8.56e-09,18;CL:0002419,8.56e-09,18;CL:0000790,8.56e-09,18;CL:0000084,6.12e-08,25;CL:0000827,6.12e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;8.44e-09;18!CL:0000051;6.19e-08;53!UBERON:0006601;1.06e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.39e-23!115;UBERON:0001049!1.68e-19!57;UBERON:0005068!1.68e-19!57;UBERON:0006241!1.68e-19!57;UBERON:0007135!1.68e-19!57;UBERON:0001017!6.70e-18!82;UBERON:0000073!1.63e-17!94;UBERON:0001016!1.63e-17!94;UBERON:0005743!6.66e-17!86;UBERON:0000955!1.93e-16!69;UBERON:0006238!1.93e-16!69;UBERON:0003080!4.25e-16!42;UBERON:0002780!5.17e-16!41;UBERON:0001890!5.17e-16!41;UBERON:0006240!5.17e-16!41;UBERON:0002616!2.32e-15!59;UBERON:0001893!7.94e-14!34;UBERON:0002020!1.44e-13!34;UBERON:0003528!1.44e-13!34;UBERON:0002791!1.74e-13!33;UBERON:0001869!1.22e-12!32;UBERON:0002346!6.40e-12!90;UBERON:0003075!5.88e-11!86;UBERON:0007284!5.88e-11!86;UBERON:0002619!1.20e-10!22;UBERON:0001950!1.01e-09!20;UBERON:0000956!1.34e-09!25;UBERON:0000203!1.34e-09!25;UBERON:0003056!5.06e-09!61;UBERON:0000924!6.54e-09!173;UBERON:0006601!6.54e-09!173;UBERON:0000153!1.15e-08!129;UBERON:0007811!1.15e-08!129;UBERON:0004121!3.63e-08!169;UBERON:0000033!2.49e-07!123 | |ontology_enrichment_uberon=UBERON:0007023!9.39e-23!115;UBERON:0001049!1.68e-19!57;UBERON:0005068!1.68e-19!57;UBERON:0006241!1.68e-19!57;UBERON:0007135!1.68e-19!57;UBERON:0001017!6.70e-18!82;UBERON:0000073!1.63e-17!94;UBERON:0001016!1.63e-17!94;UBERON:0005743!6.66e-17!86;UBERON:0000955!1.93e-16!69;UBERON:0006238!1.93e-16!69;UBERON:0003080!4.25e-16!42;UBERON:0002780!5.17e-16!41;UBERON:0001890!5.17e-16!41;UBERON:0006240!5.17e-16!41;UBERON:0002616!2.32e-15!59;UBERON:0001893!7.94e-14!34;UBERON:0002020!1.44e-13!34;UBERON:0003528!1.44e-13!34;UBERON:0002791!1.74e-13!33;UBERON:0001869!1.22e-12!32;UBERON:0002346!6.40e-12!90;UBERON:0003075!5.88e-11!86;UBERON:0007284!5.88e-11!86;UBERON:0002619!1.20e-10!22;UBERON:0001950!1.01e-09!20;UBERON:0000956!1.34e-09!25;UBERON:0000203!1.34e-09!25;UBERON:0003056!5.06e-09!61;UBERON:0000924!6.54e-09!173;UBERON:0006601!6.54e-09!173;UBERON:0000153!1.15e-08!129;UBERON:0007811!1.15e-08!129;UBERON:0004121!3.63e-08!169;UBERON:0000033!2.49e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;4.85e-12;34!UBERON:0002780;6.21e-12;41!UBERON:0001890;6.21e-12;41!UBERON:0002791;7.29e-12;32!UBERON:0003528;9.44e-12;34!UBERON:0002020;9.44e-12;34!UBERON:0001869;1.29e-11;32!UBERON:0000073;4.38e-11;53!UBERON:0002616;4.38e-11;53!UBERON:0002619;1.10e-10;22!UBERON:0001950;9.64e-10;20!UBERON:0000956;1.06e-09;25!UBERON:0000203;1.06e-09;25!UBERON:0000955;2.39e-08;68!UBERON:0001017;1.01e-07;75!UBERON:0001016;3.77e-07;83 | |||
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| ||
|short_description=p1@TMEM116 | |short_description=p1@TMEM116 | ||
}} | }} |
Latest revision as of 10:34, 16 September 2015
Short description: | p1@TMEM116 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM116_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000354825, uc001ttc.1, uc001ttd.1, uc001tte.1, uc001ttf.1, uc001ttg.1, uc001tth.1, uc001tti.1_5end |
EntrezGene: | TMEM116 |
HGNC: | 25084 |
UniProt: | Q8NCL8Q9BWF8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.50e-12 | 53 |
common lymphoid progenitor | 1.50e-12 | 53 |
lymphoid lineage restricted progenitor cell | 3.38e-12 | 52 |
mature alpha-beta T cell | 8.56e-09 | 18 |
alpha-beta T cell | 8.56e-09 | 18 |
immature T cell | 8.56e-09 | 18 |
mature T cell | 8.56e-09 | 18 |
immature alpha-beta T cell | 8.56e-09 | 18 |
T cell | 6.12e-08 | 25 |
pro-T cell | 6.12e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.54e-22 | 114 |
neural tube | 2.13e-19 | 56 |
neural rod | 2.13e-19 | 56 |
future spinal cord | 2.13e-19 | 56 |
neural keel | 2.13e-19 | 56 |
nervous system | 2.61e-18 | 89 |
regional part of nervous system | 4.31e-18 | 53 |
regional part of brain | 4.31e-18 | 53 |
central nervous system | 9.25e-18 | 81 |
brain | 2.62e-16 | 68 |
future brain | 2.62e-16 | 68 |
regional part of forebrain | 5.17e-16 | 41 |
forebrain | 5.17e-16 | 41 |
anterior neural tube | 5.17e-16 | 41 |
future forebrain | 5.17e-16 | 41 |
telencephalon | 7.94e-14 | 34 |
brain grey matter | 1.44e-13 | 34 |
gray matter | 1.44e-13 | 34 |
regional part of telencephalon | 6.80e-13 | 32 |
cerebral hemisphere | 1.21e-12 | 32 |
neurectoderm | 1.25e-12 | 86 |
neural plate | 1.22e-11 | 82 |
presumptive neural plate | 1.22e-11 | 82 |
regional part of cerebral cortex | 1.20e-10 | 22 |
organ system subdivision | 4.37e-10 | 223 |
neocortex | 1.01e-09 | 20 |
cerebral cortex | 1.33e-09 | 25 |
pallium | 1.33e-09 | 25 |
ectoderm-derived structure | 3.35e-09 | 171 |
ectoderm | 3.35e-09 | 171 |
presumptive ectoderm | 3.35e-09 | 171 |
pre-chordal neural plate | 5.14e-09 | 61 |
ecto-epithelium | 6.52e-08 | 104 |