FFCP PHASE1:Hg19::chr5:151304407..151304416,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2741 | |EntrezGene=2741 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4326 | |HGNC=4326 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000274576_5end | |association_with_transcript=-4bp_to_ENST00000274576_5end | ||
|cluster_id=chr5:151304407..151304416,- | |||
|coexpression_cluster_id=C993 | |coexpression_cluster_id=C993 | ||
|description=CAGE_peak_2_at_GLRA1_5end | |description=CAGE_peak_2_at_GLRA1_5end | ||
|id=chr5:151304407..151304416,- | |id=chr5:151304407..151304416,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.83e-14;3!UBERON:0003057;1.83e-14;3!UBERON:0006601;4.63e-08;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.49e-57!57;UBERON:0005068!8.49e-57!57;UBERON:0006241!8.49e-57!57;UBERON:0007135!8.49e-57!57;UBERON:0003076!2.00e-53!15;UBERON:0003057!2.00e-53!15;UBERON:0005743!8.58e-51!86;UBERON:0001017!2.38e-49!82;UBERON:0000073!2.55e-49!94;UBERON:0001016!2.55e-49!94;UBERON:0003075!1.81e-43!86;UBERON:0007284!1.81e-43!86;UBERON:0000955!1.81e-41!69;UBERON:0006238!1.81e-41!69;UBERON:0002346!2.32e-41!90;UBERON:0002616!1.23e-40!59;UBERON:0001950!8.28e-36!20;UBERON:0004733!1.22e-35!12;UBERON:0002028!1.22e-35!12;UBERON:0007277!1.22e-35!12;UBERON:0007023!9.87e-35!115;UBERON:0004732!8.15e-33!13;UBERON:0002619!1.57e-32!22;UBERON:0002298!8.73e-31!8;UBERON:0002020!1.64e-29!34;UBERON:0003528!1.64e-29!34;UBERON:0000956!1.47e-28!25;UBERON:0000203!1.47e-28!25;UBERON:0001869!2.13e-26!32;UBERON:0004121!9.47e-26!169;UBERON:0000924!4.69e-25!173;UBERON:0006601!4.69e-25!173;UBERON:0001893!9.14e-25!34;UBERON:0000033!5.62e-24!123;UBERON:0000153!1.12e-22!129;UBERON:0007811!1.12e-22!129;UBERON:0000988!1.12e-21!3;UBERON:0002791!2.18e-21!33;UBERON:0001896!2.57e-21!3;UBERON:0005290!2.57e-21!3;UBERON:0010096!2.57e-21!3;UBERON:0002240!3.15e-21!3;UBERON:0002780!2.84e-20!41;UBERON:0001890!2.84e-20!41;UBERON:0006240!2.84e-20!41;UBERON:0003080!9.46e-20!42;UBERON:0002680!4.43e-19!9;UBERON:0001895!4.43e-19!9;UBERON:0010092!4.43e-19!9;UBERON:0000200!1.49e-17!6;UBERON:0003056!2.17e-15!61;UBERON:0002148!3.97e-15!2;UBERON:0009662!3.97e-15!2;UBERON:0001876!9.10e-15!2;UBERON:0000025!8.01e-14!194;UBERON:0001871!1.28e-13!7;UBERON:0005174!5.79e-13!5;UBERON:0001137!5.79e-13!5;UBERON:0002021!1.78e-12!5;UBERON:0006331!2.21e-10!3;UBERON:0004111!2.85e-10!241;UBERON:0002771!1.17e-09!3;UBERON:0000064!2.79e-09!219;UBERON:0000483!7.67e-09!309;UBERON:0000119!1.04e-08!312;UBERON:0007190!5.79e-08!1;UBERON:0000477!5.86e-08!286;UBERON:0002902!7.10e-08!1;UBERON:0009899!7.10e-08!1;UBERON:0002363!9.29e-08!1;UBERON:0007647!9.29e-08!1;UBERON:0010115!9.29e-08!1;UBERON:0002022!1.06e-07!1;UBERON:0002581!1.14e-07!1;UBERON:0000475!1.32e-07!365 | |ontology_enrichment_uberon=UBERON:0001049!8.49e-57!57;UBERON:0005068!8.49e-57!57;UBERON:0006241!8.49e-57!57;UBERON:0007135!8.49e-57!57;UBERON:0003076!2.00e-53!15;UBERON:0003057!2.00e-53!15;UBERON:0005743!8.58e-51!86;UBERON:0001017!2.38e-49!82;UBERON:0000073!2.55e-49!94;UBERON:0001016!2.55e-49!94;UBERON:0003075!1.81e-43!86;UBERON:0007284!1.81e-43!86;UBERON:0000955!1.81e-41!69;UBERON:0006238!1.81e-41!69;UBERON:0002346!2.32e-41!90;UBERON:0002616!1.23e-40!59;UBERON:0001950!8.28e-36!20;UBERON:0004733!1.22e-35!12;UBERON:0002028!1.22e-35!12;UBERON:0007277!1.22e-35!12;UBERON:0007023!9.87e-35!115;UBERON:0004732!8.15e-33!13;UBERON:0002619!1.57e-32!22;UBERON:0002298!8.73e-31!8;UBERON:0002020!1.64e-29!34;UBERON:0003528!1.64e-29!34;UBERON:0000956!1.47e-28!25;UBERON:0000203!1.47e-28!25;UBERON:0001869!2.13e-26!32;UBERON:0004121!9.47e-26!169;UBERON:0000924!4.69e-25!173;UBERON:0006601!4.69e-25!173;UBERON:0001893!9.14e-25!34;UBERON:0000033!5.62e-24!123;UBERON:0000153!1.12e-22!129;UBERON:0007811!1.12e-22!129;UBERON:0000988!1.12e-21!3;UBERON:0002791!2.18e-21!33;UBERON:0001896!2.57e-21!3;UBERON:0005290!2.57e-21!3;UBERON:0010096!2.57e-21!3;UBERON:0002240!3.15e-21!3;UBERON:0002780!2.84e-20!41;UBERON:0001890!2.84e-20!41;UBERON:0006240!2.84e-20!41;UBERON:0003080!9.46e-20!42;UBERON:0002680!4.43e-19!9;UBERON:0001895!4.43e-19!9;UBERON:0010092!4.43e-19!9;UBERON:0000200!1.49e-17!6;UBERON:0003056!2.17e-15!61;UBERON:0002148!3.97e-15!2;UBERON:0009662!3.97e-15!2;UBERON:0001876!9.10e-15!2;UBERON:0000025!8.01e-14!194;UBERON:0001871!1.28e-13!7;UBERON:0005174!5.79e-13!5;UBERON:0001137!5.79e-13!5;UBERON:0002021!1.78e-12!5;UBERON:0006331!2.21e-10!3;UBERON:0004111!2.85e-10!241;UBERON:0002771!1.17e-09!3;UBERON:0000064!2.79e-09!219;UBERON:0000483!7.67e-09!309;UBERON:0000119!1.04e-08!312;UBERON:0007190!5.79e-08!1;UBERON:0000477!5.86e-08!286;UBERON:0002902!7.10e-08!1;UBERON:0009899!7.10e-08!1;UBERON:0002363!9.29e-08!1;UBERON:0007647!9.29e-08!1;UBERON:0010115!9.29e-08!1;UBERON:0002022!1.06e-07!1;UBERON:0002581!1.14e-07!1;UBERON:0000475!1.32e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0002298;9.96e-60;6!UBERON:0001896;2.87e-53;3!UBERON:0005290;2.87e-53;3!UBERON:0004733;2.00e-30;12!UBERON:0002028;2.00e-30;12!UBERON:0004732;3.65e-28;13!UBERON:0002148;3.11e-21;2!UBERON:0006331;3.11e-21;2!UBERON:0009662;3.11e-21;2!UBERON:0001876;5.69e-21;2!UBERON:0000988;1.22e-14;3!UBERON:0002240;1.83e-14;3!UBERON:0005174;1.83e-14;3!UBERON:0001137;1.83e-14;3!UBERON:0000349;3.22e-09;5!UBERON:0000073;1.13e-07;53!UBERON:0002616;1.13e-07;53!UBERON:0001871;6.04e-07;6!UBERON:0001017;6.65e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,1.22e-59,6;UBERON:0001896,3.75e-53,3;UBERON:0005290,3.75e-53,3;UBERON:0010096,3.75e-53,3;UBERON:0003076,1.46e-42,15;UBERON:0003057,1.46e-42,15;UBERON:0004733,2.22e-30,12;UBERON:0002028,2.22e-30,12;UBERON:0007277,2.22e-30,12;UBERON:0004732,4.00e-28,13;UBERON:0002148,3.11e-21,2;UBERON:0006331,3.11e-21,2;UBERON:0009662,3.11e-21,2;UBERON:0001876,4.66e-21,2;UBERON:0001049,5.63e-18,56;UBERON:0005068,5.63e-18,56;UBERON:0006241,5.63e-18,56;UBERON:0007135,5.63e-18,56;UBERON:0000988,1.22e-14,3;UBERON:0002240,1.83e-14,3;UBERON:0005174,1.83e-14,3;UBERON:0001137,1.83e-14,3;UBERON:0001017,1.45e-12,81;UBERON:0003075,1.45e-12,82;UBERON:0007284,1.45e-12,82;UBERON:0000073,1.98e-12,53;UBERON:0002616,1.98e-12,53;UBERON:0002346,5.13e-12,86;UBERON:0001016,2.13e-11,89;UBERON:0010371,4.61e-10,104;UBERON:0000955,9.66e-10,68;UBERON:0006238,9.66e-10,68;UBERON:0007023,2.58e-09,114;UBERON:0000349,2.97e-09,5;UBERON:0010314,4.60e-08,132;UBERON:0001871,5.70e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442317039724898,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.04203529810047,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,1.14681839138014,0.221858103073705,2.17337410294842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0.205116364240755,0,0.207471757392654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0,0.443910671357348,0,0,0,0,0,0,0,0,0,0,0,0,0.543757863814654,0.0657727735628491,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57046773691956,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442317039724898,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.04203529810047,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,1.14681839138014,0.221858103073705,2.17337410294842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0.205116364240755,0,0.207471757392654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0,0.443910671357348,0,0,0,0,0,0,0,0,0,0,0,0,0.543757863814654,0.0657727735628491,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57046773691956,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@GLRA1 | |short_description=p2@GLRA1 | ||
}} | }} |
Latest revision as of 10:51, 16 September 2015
Short description: | p2@GLRA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GLRA1_5end |
Coexpression cluster: | C993_locus_medulla_spinal_pons_small_cerebellum_amygdala |
Association with transcript: | -4bp_to_ENST00000274576_5end |
EntrezGene: | GLRA1 |
HGNC: | 4326 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data