FFCP PHASE1:Hg19::chr20:44519948..44519986,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:44519948..44519986,+
|short_description=p1@CTSA
|description=CAGE_peak_1_at_CTSA_5end
|association_with_transcript=0bp_to_ENST00000191018,ENST00000419493_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5476 | |EntrezGene=5476 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9251 | |HGNC=9251 | ||
|TSSclassifier=strong | |||
|UniProt=P10619,Q5JZH0 | |UniProt=P10619,Q5JZH0 | ||
|association_with_transcript=0bp_to_ENST00000191018,ENST00000419493_5end | |||
|cluster_id=chr20:44519948..44519986,+ | |||
|coexpression_cluster_id=C1750 | |||
|description=CAGE_peak_1_at_CTSA_5end | |||
|id=chr20:44519948..44519986,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.98e-13!180;CL:0002371!1.37e-12!591;CL:0000144!1.22e-11!625;CL:0000222!4.47e-11!119;CL:0000548!1.38e-10!679;CL:0000004!1.38e-10!679;CL:0000255!1.38e-10!679;CL:0000057!5.30e-10!75;CL:0000012!5.39e-10!682;CL:0000048!2.35e-09!430;CL:0002194!4.75e-09!63;CL:0000576!4.75e-09!63;CL:0000040!4.75e-09!63;CL:0000559!4.75e-09!63;CL:0000213!4.90e-08!57;CL:0000215!4.90e-08!57;CL:0000723!5.13e-08!436;CL:0002009!9.09e-08!65;CL:0002320!1.01e-07!365;CL:0002078!3.48e-07!44;CL:0000063!8.89e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.93e-07;39!CL:0000234;8.93e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.89e-11,121;CL:0000057,3.03e-10,76;CL:0000048,2.41e-09,427;CL:0002194,3.69e-09,59;CL:0000576,3.69e-09,59;CL:0000040,3.69e-09,59;CL:0000559,3.69e-09,59;CL:0000213,3.02e-08,58;CL:0000215,3.02e-08,58;CL:0000723,5.27e-08,433;CL:0002009,8.01e-08,61;CL:0002320,1.34e-07,361;CL:0000473,2.03e-07,48;CL:0000234,2.03e-07,48;CL:0002078,2.13e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.00e-16!448;UBERON:0004120!1.00e-16!448;UBERON:0006603!1.00e-16!448;UBERON:0003081!2.34e-14!216;UBERON:0000468!2.81e-10!659;UBERON:0002204!9.87e-10!167;UBERON:0002405!1.38e-09!115;UBERON:0000480!3.25e-09!626;UBERON:0000467!4.59e-09!625;UBERON:0001009!4.18e-08!113;UBERON:0003914!4.69e-08!118;UBERON:0004535!5.70e-08!110;UBERON:0002384!1.74e-07!375;UBERON:0002193!3.40e-07!112;UBERON:0001474!9.84e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.76e-17,315;UBERON:0004120,1.76e-17,315;UBERON:0006603,1.76e-17,315;UBERON:0003081,8.63e-14,203;UBERON:0002204,1.26e-10,167;UBERON:0003914,6.59e-08,117;UBERON:0001009,6.66e-08,112;UBERON:0004535,9.09e-08,109;UBERON:0002384,2.31e-07,371;UBERON:0001434,3.04e-07,100;UBERON:0002193,3.82e-07,108;UBERON:0002405,4.02e-07,93;UBERON:0004765,6.45e-07,90 | |||
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| ||
|short_description=p1@CTSA | |||
}} | }} |
Latest revision as of 13:00, 16 September 2015
Short description: | p1@CTSA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CTSA_5end |
Coexpression cluster: | C1750_Monocytederived_Fibroblast_Mesenchymal_Smooth_Macrophage_CD14_Pericytes |
Association with transcript: | 0bp_to_ENST00000191018, ENST00000419493_5end |
EntrezGene: | CTSA |
HGNC: | 9251 |
UniProt: | P10619Q5JZH0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.89e-11 | 121 |
fibroblast | 3.03e-10 | 76 |
multi fate stem cell | 2.41e-09 | 427 |
monopoietic cell | 3.69e-09 | 59 |
monocyte | 3.69e-09 | 59 |
monoblast | 3.69e-09 | 59 |
promonocyte | 3.69e-09 | 59 |
lining cell | 3.02e-08 | 58 |
barrier cell | 3.02e-08 | 58 |
somatic stem cell | 5.27e-08 | 433 |
macrophage dendritic cell progenitor | 8.01e-08 | 61 |
connective tissue cell | 1.34e-07 | 361 |
defensive cell | 2.03e-07 | 48 |
phagocyte | 2.03e-07 | 48 |
meso-epithelial cell | 2.13e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.76e-17 | 315 |
mesoderm-derived structure | 1.76e-17 | 315 |
presumptive mesoderm | 1.76e-17 | 315 |
lateral plate mesoderm | 8.63e-14 | 203 |
musculoskeletal system | 1.26e-10 | 167 |
epithelial tube | 6.59e-08 | 117 |
circulatory system | 6.66e-08 | 112 |
cardiovascular system | 9.09e-08 | 109 |
connective tissue | 2.31e-07 | 371 |
skeletal system | 3.04e-07 | 100 |
hemolymphoid system | 3.82e-07 | 108 |
immune system | 4.02e-07 | 93 |
skeletal element | 6.45e-07 | 90 |