FFCP PHASE1:Hg19::chr2:113994526..113994556,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7849 | |EntrezGene=7849 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8622 | |HGNC=8622 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-20bp_to_ENST00000554352_5end | |association_with_transcript=-20bp_to_ENST00000554352_5end | ||
|cluster_id=chr2:113994526..113994556,- | |||
|description=CAGE_peak_3_at_PAX8_5end | |description=CAGE_peak_3_at_PAX8_5end | ||
|id=chr2:113994526..113994556,- | |id=chr2:113994526..113994556,- | ||
|ontology_enrichment_celltype=CL:0002368!6.97e-08!13 | |ontology_enrichment_celltype=CL:0002368!6.97e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0000235;2.96e-08;6!CL:0000244;3.59e-08;4!CL:0000731;3.59e-08;4!CL:0002368;5.64e-08;13!CL:0002202;2.42e-07;9!CL:0002632;2.42e-07;9!CL:0002328;8.38e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,2.39e-08,4;CL:0000731,2.39e-08,4;CL:0000235,3.35e-08,6;CL:0002368,4.12e-08,13;CL:0002202,2.59e-07,9;CL:0002632,2.59e-07,9;CL:0002328,6.20e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!3.29e-07!659;UBERON:0000467!8.31e-07!625 | |ontology_enrichment_uberon=UBERON:0000468!3.29e-07!659;UBERON:0000467!8.31e-07!625 | ||
|ontology_enrichment_uberon_v019=UBERON:0005910;3.45e-08;6!UBERON:0000486;6.39e-07;12!UBERON:0004815;8.38e-07;3!UBERON:0002031;8.38e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005910,2.52e-08,6;UBERON:0004815,6.20e-07,3;UBERON:0002031,6.20e-07,3 | |||
|phase1_expression=0.908391896352783,5.1384125733836,1.55049844505568,4.00293193412522,0.446961094427288,0,2.53299878168311,0,0,2.45733936501509,1.39560233594486,0.436882744260345,0.791300934685361,0.618831764800233,0.331397375727916,1.34465029290355,0,0,0,0.123121058076788,0,0,0,0,0,0.0764134057479513,0,0,0.786728553697808,0,1.08371286321253,7.35536979583142,2.71085326900425,2.58827807116751,0,0,0,0,0,0,1.11957737119962,3.56283032620878,0.257575567634187,0.581592955118259,0.377875943688809,0.485168122375632,1.85943229524548,0,0.619412741790207,0.28769239232215,0,0,1.03423704220986,0,0,1.50593871634084,1.91034305040492,0.449446968890169,1.53041946185451,0,0,0,0,0,0.870627715885752,1.13477044938228,0,0.251248665256743,0,0.434377689410233,0.605399502633369,0.368277635987565,0,0,0,0.209658645508376,0.22465726229299,0,0.48217676009124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,2.43806866313962,0,0,0,0.50133791063589,0,0.795285947051099,0,0,0,0.527008714158756,0.130979075497713,7.65020105414339,0,1.29818957461873,1.39303789839414,1.59549552622638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52054421143703,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0.25326102332916,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0.747243402759005,0.117434498643765,0,0,0.204154171254893,0,0.103325781175765,0,0,1.82032272387605,5.03032699271367,0,0,0,0.438977620880838,0,0,0,0,0.213557388818567,1.69545520927649,0.600182192168805,2.06105058476878,1.8034837803194,0.744467425326359,0,1.16924406193438,0,0,0,0,0.10075209822764,0.67824236924195,0,0.545492241181669,1.72082757233402,0,0,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,2.94017422771084,1.26755034821831,0,0,0,0.245976877086227,0.686271241194102,0.768251997860379,2.24803506515239,1.70899253099772,0.0925884451585296,0,0,0,0,0,0.433099343283221,0.462985512576611,0.380508304469197,0,0,4.18568910348575,2.10603838625314,0,5.62403003920662,0,2.1266264586358,2.23896306757121,3.77824120068151,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,1.62868092146868,0.355391948742546,0,0.602878754119172,0.871533458600294,0,3.64871341923571,1.50677127429638,6.32501818449095,0.718874566474748,0,0,0,2.4657158706046,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0.347534457872331,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0.992431231275107,1.68808170616869,2.52594084989766,0.896974044789907,1.02341449813341,1.76939313257968,0,0.154209693802656,0.177561725313127,0.328508624055237,1.03850885836724,0.464841513839837,0,1.20303882181971,0.736647911487171,0,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.27470839445503,0.165018999841176,5.74265537996172,0,1.6068392984416,0,0,0,0.275673144969061,0,0.290033387828457,0.0852266274161009,0,1.65284915360978,1.72971060628596,0.127612712494584,0.6069466851333,3.253918845081,0.62962469366128,0.6970372701606,0,0.532306030317022,1.73986598415015,0.18532421910392,0.143124886741991,0,0.316379424718726,0,0.255897791311334,0,1.27281299170375,0,0,0,0,0.808729926293264,0,3.37006764991185,0,3.41198885483798,0,0,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,2.53329162357197,0.329294892959902,0,0,4.23377295992253,0.670302275535787,1.08890984861323,0.470719003883896,3.87454835404107,5.05414427002877,2.66058092122005,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846694330895531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,1.61158997199083,0,0,0.852408440419239,1.43246690842614,0,2.15012491469462,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0.311039587661807,1.25815691606258,1.9692329214317,0,0.591860433821602,0,0,0,0,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67308493134324,0.384751292518985,11.7360317522411,0,0,0.108647371922008,0.638002319463839,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973033209536731,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13735843331278,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,1.54787429224455,0,0,0,2.03676934625681,0,0,0,0.19871461170299,0,0.195551382734803,0.480952921509202,0,0.599428828746391,1.00863292007874,0,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0.859530882839914,0,0.558564802544508,0,0.717873024576814,0.399358000997982,0.429226048136571,0.446342914883745,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0.157611414598396,0,0,0.179287339332845,0,2.85878130549347,0,0.25426853765475,0,0,0,0,0,1.19271615249795,0,0.146552233678082,0,0.129282956361551,0,0,1.40963004463334,0.854299300541557,0,0,0.496166021811951,0,0,0.638341257770182,0.544017803369474,1.0027595760908,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0.597019211547496,0,2.21922344601045,1.89403005275089,0.754703705257725,0.889811221596536,1.60188047877847,0.151230923763239,1.08806040407946,1.47855149989634,0.477890301491107,2.24901556081802,0.776314784381297,0,0,1.04349012362347,1.95334891696384,1.14241563650639,0,0,1.28892668450986,0.928067519756987,0,2.00013882331577,0,0.336749488765919,0,0.770479321629213,2.35885750512418,0,4.30741258473318,0,0.244736704506468,0,0,0.657852148736121,0,0,0,1.02496607435179,0.345430341731199,0.303859956177382,0,0,1.19578356282027,1.14495775979091,0,0,2.74705760366215,0,0,0,0,2.76158925377761,0.279759015438889,1.24415452006595,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.88332946650923,0.235939446695481,0,0,0.381382095467167,0,0.198916222116275,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.222462803784138,0.078493092850514,0,0,0,0,0,0.214429632529969,0,0,0,0,3.72989095493466,0,0,1.72090943528111,0.828324005113957,2.04512171421978,0.423387050190929,0,0,0,0.111855431797792,2.25745537315059,4.99863492427305,0,0.205325613712494,0,0,0,0,0,0,0,0,1.62065732026684,0,0,0.245148321753905,0,0,0.297046400327086,0,0.339854229375634,0.0939839179798536,0.257831551894309,0,0.357107877211315,0,0,0,0.917458566809082,0,0,0,0,0,1.85997509083376,0.462175628631418,2.16313281061895,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0.852935927603924,0,0.387533459016037,0.124149428591716,0,0.12729431655633,0.202117188958219,0.653150243690884,0,0.5388164241167,1.36272190246085,0.332660356546013,0.569822880276821,3.4152750680869,0,8.80286980644551,0,0.122241444182866,0,0,0.805095174364105,0 | |phase1_expression=0.908391896352783,5.1384125733836,1.55049844505568,4.00293193412522,0.446961094427288,0,2.53299878168311,0,0,2.45733936501509,1.39560233594486,0.436882744260345,0.791300934685361,0.618831764800233,0.331397375727916,1.34465029290355,0,0,0,0.123121058076788,0,0,0,0,0,0.0764134057479513,0,0,0.786728553697808,0,1.08371286321253,7.35536979583142,2.71085326900425,2.58827807116751,0,0,0,0,0,0,1.11957737119962,3.56283032620878,0.257575567634187,0.581592955118259,0.377875943688809,0.485168122375632,1.85943229524548,0,0.619412741790207,0.28769239232215,0,0,1.03423704220986,0,0,1.50593871634084,1.91034305040492,0.449446968890169,1.53041946185451,0,0,0,0,0,0.870627715885752,1.13477044938228,0,0.251248665256743,0,0.434377689410233,0.605399502633369,0.368277635987565,0,0,0,0.209658645508376,0.22465726229299,0,0.48217676009124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,2.43806866313962,0,0,0,0.50133791063589,0,0.795285947051099,0,0,0,0.527008714158756,0.130979075497713,7.65020105414339,0,1.29818957461873,1.39303789839414,1.59549552622638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52054421143703,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0.25326102332916,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0.747243402759005,0.117434498643765,0,0,0.204154171254893,0,0.103325781175765,0,0,1.82032272387605,5.03032699271367,0,0,0,0.438977620880838,0,0,0,0,0.213557388818567,1.69545520927649,0.600182192168805,2.06105058476878,1.8034837803194,0.744467425326359,0,1.16924406193438,0,0,0,0,0.10075209822764,0.67824236924195,0,0.545492241181669,1.72082757233402,0,0,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,2.94017422771084,1.26755034821831,0,0,0,0.245976877086227,0.686271241194102,0.768251997860379,2.24803506515239,1.70899253099772,0.0925884451585296,0,0,0,0,0,0.433099343283221,0.462985512576611,0.380508304469197,0,0,4.18568910348575,2.10603838625314,0,5.62403003920662,0,2.1266264586358,2.23896306757121,3.77824120068151,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,1.62868092146868,0.355391948742546,0,0.602878754119172,0.871533458600294,0,3.64871341923571,1.50677127429638,6.32501818449095,0.718874566474748,0,0,0,2.4657158706046,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0.347534457872331,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0.992431231275107,1.68808170616869,2.52594084989766,0.896974044789907,1.02341449813341,1.76939313257968,0,0.154209693802656,0.177561725313127,0.328508624055237,1.03850885836724,0.464841513839837,0,1.20303882181971,0.736647911487171,0,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.27470839445503,0.165018999841176,5.74265537996172,0,1.6068392984416,0,0,0,0.275673144969061,0,0.290033387828457,0.0852266274161009,0,1.65284915360978,1.72971060628596,0.127612712494584,0.6069466851333,3.253918845081,0.62962469366128,0.6970372701606,0,0.532306030317022,1.73986598415015,0.18532421910392,0.143124886741991,0,0.316379424718726,0,0.255897791311334,0,1.27281299170375,0,0,0,0,0.808729926293264,0,3.37006764991185,0,3.41198885483798,0,0,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,2.53329162357197,0.329294892959902,0,0,4.23377295992253,0.670302275535787,1.08890984861323,0.470719003883896,3.87454835404107,5.05414427002877,2.66058092122005,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846694330895531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,1.61158997199083,0,0,0.852408440419239,1.43246690842614,0,2.15012491469462,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0.311039587661807,1.25815691606258,1.9692329214317,0,0.591860433821602,0,0,0,0,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67308493134324,0.384751292518985,11.7360317522411,0,0,0.108647371922008,0.638002319463839,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973033209536731,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13735843331278,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,1.54787429224455,0,0,0,2.03676934625681,0,0,0,0.19871461170299,0,0.195551382734803,0.480952921509202,0,0.599428828746391,1.00863292007874,0,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0.859530882839914,0,0.558564802544508,0,0.717873024576814,0.399358000997982,0.429226048136571,0.446342914883745,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0.157611414598396,0,0,0.179287339332845,0,2.85878130549347,0,0.25426853765475,0,0,0,0,0,1.19271615249795,0,0.146552233678082,0,0.129282956361551,0,0,1.40963004463334,0.854299300541557,0,0,0.496166021811951,0,0,0.638341257770182,0.544017803369474,1.0027595760908,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0.597019211547496,0,2.21922344601045,1.89403005275089,0.754703705257725,0.889811221596536,1.60188047877847,0.151230923763239,1.08806040407946,1.47855149989634,0.477890301491107,2.24901556081802,0.776314784381297,0,0,1.04349012362347,1.95334891696384,1.14241563650639,0,0,1.28892668450986,0.928067519756987,0,2.00013882331577,0,0.336749488765919,0,0.770479321629213,2.35885750512418,0,4.30741258473318,0,0.244736704506468,0,0,0.657852148736121,0,0,0,1.02496607435179,0.345430341731199,0.303859956177382,0,0,1.19578356282027,1.14495775979091,0,0,2.74705760366215,0,0,0,0,2.76158925377761,0.279759015438889,1.24415452006595,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.88332946650923,0.235939446695481,0,0,0.381382095467167,0,0.198916222116275,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.222462803784138,0.078493092850514,0,0,0,0,0,0.214429632529969,0,0,0,0,3.72989095493466,0,0,1.72090943528111,0.828324005113957,2.04512171421978,0.423387050190929,0,0,0,0.111855431797792,2.25745537315059,4.99863492427305,0,0.205325613712494,0,0,0,0,0,0,0,0,1.62065732026684,0,0,0.245148321753905,0,0,0.297046400327086,0,0.339854229375634,0.0939839179798536,0.257831551894309,0,0.357107877211315,0,0,0,0.917458566809082,0,0,0,0,0,1.85997509083376,0.462175628631418,2.16313281061895,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0.852935927603924,0,0.387533459016037,0.124149428591716,0,0.12729431655633,0.202117188958219,0.653150243690884,0,0.5388164241167,1.36272190246085,0.332660356546013,0.569822880276821,3.4152750680869,0,8.80286980644551,0,0.122241444182866,0,0,0.805095174364105,0 | ||
|short_description=p3@PAX8 | |short_description=p3@PAX8 | ||
}} | }} |
Latest revision as of 13:05, 16 September 2015
Short description: | p3@PAX8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PAX8_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000554352_5end |
EntrezGene: | PAX8 |
HGNC: | 8622 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 2.39e-08 | 4 |
urothelial cell | 2.39e-08 | 4 |
macrophage | 3.35e-08 | 6 |
respiratory epithelial cell | 4.12e-08 | 13 |
epithelial cell of tracheobronchial tree | 2.59e-07 | 9 |
epithelial cell of lower respiratory tract | 2.59e-07 | 9 |
bronchial epithelial cell | 6.20e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
transitional epithelium | 2.52e-08 | 6 |
lower respiratory tract epithelium | 6.20e-07 | 3 |
epithelium of bronchus | 6.20e-07 | 3 |