FFCP PHASE1:Hg19::chr12:113909667..113909681,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64211 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14216 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H2C1 | |||
|association_with_transcript=195bp_to_ENST00000261731,NM_022363,uc001tvj.1_5end | |||
|cluster_id=chr12:113909667..113909681,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_LHX5_5end | |||
|id=chr12:113909667..113909681,- | |||
|ontology_enrichment_celltype=CL:0002322!1.75e-31!5;CL:0000080!8.06e-10!6;CL:0002541!8.36e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.34e-83;5!CL:0002321;5.39e-28;15!CL:0000148;1.06e-15;10!CL:0000147;2.12e-11;14!CL:0000123;1.64e-09;2!CL:0000242;1.64e-09;2!CL:0000710;3.76e-08;20!CL:0002077;4.15e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.34e-83,5;CL:0000148,1.06e-15,10;CL:0000541,1.06e-15,10;CL:0000147,2.12e-11,14;CL:0000242,1.86e-09,2;CL:0000710,3.76e-08,20;CL:0002077,3.90e-08,34 | |||
|ontology_enrichment_development_v019=UBERON:0006215;9.37e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!2.83e-30!15;UBERON:0003057!2.83e-30!15;UBERON:0004733!3.90e-30!12;UBERON:0002028!3.90e-30!12;UBERON:0007277!3.90e-30!12;UBERON:0004732!9.87e-28!13;UBERON:0002680!6.36e-23!9;UBERON:0001895!6.36e-23!9;UBERON:0010092!6.36e-23!9;UBERON:0002298!5.23e-18!8;UBERON:0000988!9.20e-18!3;UBERON:0002148!1.74e-12!2;UBERON:0009662!1.74e-12!2;UBERON:0001049!3.01e-10!57;UBERON:0005068!3.01e-10!57;UBERON:0006241!3.01e-10!57;UBERON:0007135!3.01e-10!57;UBERON:0002037!1.41e-09!6;UBERON:0006215!1.41e-09!6;UBERON:0001017!3.57e-09!82;UBERON:0000073!6.28e-09!94;UBERON:0001016!6.28e-09!94;UBERON:0001896!6.86e-09!3;UBERON:0005290!6.86e-09!3;UBERON:0010096!6.86e-09!3;UBERON:0000476!8.36e-09!3;UBERON:0000920!8.36e-09!3;UBERON:0005743!1.21e-08!86;UBERON:0006331!1.29e-08!3;UBERON:0000478!1.85e-08!24;UBERON:0002616!4.66e-08!59;UBERON:0000955!6.09e-08!69;UBERON:0006238!6.09e-08!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;4.67e-13;49!UBERON:0002331;1.54e-07;10!UBERON:0001896;9.37e-07;3!UBERON:0005290;9.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.47e-07,10;UBERON:0000358,1.47e-07,10;UBERON:0000307,1.47e-07,10;UBERON:0000091,1.47e-07,10;UBERON:0000087,1.47e-07,10;UBERON:0007010,1.47e-07,10;UBERON:0007806,1.47e-07,10;UBERON:0008780,1.47e-07,10;UBERON:0005728,1.47e-07,10;UBERON:0001896,8.15e-07,3;UBERON:0005290,8.15e-07,3;UBERON:0010096,8.15e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39105342066543,5.96383957446684,3.25343040034651,3.21349270547648,3.02785021050754,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0.331737779793674,0.591095237907095,0,0,0,0,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6686901581256,1.85345908419754,0.939797545549098,0,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,1.92498849118289,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0,0,0,0,0.8453114551668,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@LHX5 | |||
}} |
Latest revision as of 13:07, 16 September 2015
Short description: | p1@LHX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LHX5_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 195bp_to_ENST00000261731, NM_022363, uc001tvj.1_5end |
EntrezGene: | LHX5 |
HGNC: | 14216 |
UniProt: | Q9H2C1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.34e-83 | 5 |
melanocyte | 1.06e-15 | 10 |
melanoblast | 1.06e-15 | 10 |
pigment cell | 2.12e-11 | 14 |
Merkel cell | 1.86e-09 | 2 |
neurecto-epithelial cell | 3.76e-08 | 20 |
ecto-epithelial cell | 3.90e-08 | 34 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 1.47e-07 | 10 |
blastocyst | 1.47e-07 | 10 |
blastula | 1.47e-07 | 10 |
bilaminar disc | 1.47e-07 | 10 |
inner cell mass | 1.47e-07 | 10 |
cleaving embryo | 1.47e-07 | 10 |
connecting stalk | 1.47e-07 | 10 |
inner cell mass derived epiblast | 1.47e-07 | 10 |
extraembryonic mesoderm | 1.47e-07 | 10 |
medulla oblongata | 8.15e-07 | 3 |
myelencephalon | 8.15e-07 | 3 |
future myelencephalon | 8.15e-07 | 3 |