Personal tools

FFCP PHASE1:Hg19::chr12:114404090..114404099,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=9904
|EntrezGene=9904
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=29098
|HGNC=29098
|TSSclassifier=strong
|UniProt=
|UniProt=
|association_with_transcript=11bp_to_ENST00000545145_5end
|association_with_transcript=11bp_to_ENST00000545145_5end
|cluster_id=chr12:114404090..114404099,-
|coexpression_cluster_id=C99
|coexpression_cluster_id=C99
|description=CAGE_peak_2_at_RBM19_5end
|description=CAGE_peak_2_at_RBM19_5end
Line 9: Line 14:
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019=CL:0001014;1.54e-16;2!CL:0001016;1.54e-16;2!CL:0000453;1.05e-14;5!CL:0000228;6.21e-09;1!CL:0002372;6.21e-09;1!CL:0000990;2.15e-08;8!CL:0000451;6.00e-07;10
|ontology_enrichment_celltype_v019=CL:0001014;1.54e-16;2!CL:0001016;1.54e-16;2!CL:0000453;1.05e-14;5!CL:0000228;6.21e-09;1!CL:0002372;6.21e-09;1!CL:0000990;2.15e-08;8!CL:0000451;6.00e-07;10
|ontology_enrichment_celltype_v019_2=CL:0001014,1.17e-16,2;CL:0001016,1.17e-16,2;CL:0000453,9.58e-15,5;CL:0000228,4.19e-09,1;CL:0002372,4.19e-09,1;CL:0000990,2.04e-08,8;CL:0000988,4.03e-08,177;CL:0000451,5.76e-07,10
|ontology_enrichment_development_v019=
|ontology_enrichment_development_v019=
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=DOID:0060060;1.74e-09;1!DOID:0060061;1.74e-09;1!DOID:8691;1.74e-09;1
|ontology_enrichment_disease_v019=DOID:0060060;1.74e-09;1!DOID:0060061;1.74e-09;1!DOID:8691;1.74e-09;1
|ontology_enrichment_disease_v019_2=DOID:0060060,1.74e-09,1;DOID:0060061,1.74e-09,1;DOID:8691,1.74e-09,1;DOID:2531,1.36e-08,51;DOID:0060083,1.36e-08,51
|ontology_enrichment_uberon=
|ontology_enrichment_uberon=
|ontology_enrichment_uberon_v019=UBERON:0002331;1.73e-07;10
|ontology_enrichment_uberon_v019=UBERON:0002331;1.73e-07;10
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.25e-07,10;UBERON:0000358,1.25e-07,10;UBERON:0000307,1.25e-07,10;UBERON:0000091,1.25e-07,10;UBERON:0000087,1.25e-07,10;UBERON:0007010,1.25e-07,10;UBERON:0007806,1.25e-07,10;UBERON:0008780,1.25e-07,10;UBERON:0005728,1.25e-07,10
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0.458480434487708,1.31360943119913,1.33808328233255,0,0.767658796194425,0,0.919421224478927,0.30120591877825,0,0.154934401160603,0.142169232487422,0.293600439334847,0.553995408531877,0.802177789880567,0.434021741431704,0,0,0,0.145398238779565,0,0,0,0.411167888021826,0.309706370895104,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0.188242339542605,0.545812300115692,0.224723484445085,0.612167784741805,0.641858054152187,1.27867425159808,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0.434377689410233,0,0.736555271975129,0.632924774881769,0.211255286311942,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,1.12101712596307,0.526768169550154,0.590129310341499,0.393010762749165,0.411202997999018,0,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0.34362744548263,0,0.318565414324097,0,0,0,0,0,0,0,0.604820229674197,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0.221729397462564,0.175669571386252,0.261958150995425,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0.367663080345869,0,0.357198913136319,0,0.225222960966644,3.06633274931766,0.949265659568129,0.183201743930407,0,0,0,0,0.12663051166458,0.397227542439656,0.286836620748814,0,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0,0.23486899728753,0.323745888736263,0,0.204154171254893,0,0,0,0.247266929278557,0,0.718618141816238,0.336672227908132,0.250237039743928,0.277064115484183,0,0.30648779579902,0.150238058906597,0.113432183160021,0.538168907066586,0,0,0.600182192168805,0,0.257640540045629,0,0.337552664482532,0,0,0.0920498986422993,0.323292113637624,0,0.302256294682921,0,0.193260853163297,0.272746120590835,0.286804595389004,0.243947412259191,0.265059536642971,0.232387885739037,0.310983165046111,0.252320850875628,0.72995471815166,0,0,2.76269842704961,0.464367928031979,0,0.118306800039844,0.168584690078102,0.482022059766964,0.441175890929576,0.217879444092406,0,0.134831308160164,0.588664395376038,0.38474715694639,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0,0,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0.290633938513962,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.1466765716419,0.387815147273333,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,1.42636905040718,0.434343920002738,0.61642896765115,0.537182889719687,0,0.591092280605782,0.431255149719035,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,0,0,0,0.664225598535437,0.737476674166813,0.0868836144680828,0,0,0,0.215714200818617,0.320182673410333,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0,0,0,0,0.154209693802656,0,0.246381468041427,0,0,0.120859449591622,0.200506470303285,0.0920809889358963,0.68888668898764,0.364182336013434,0,0,0,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0.223874754722178,0.219259876645935,0.261435451024901,0,0,0.325378394664303,0,0.183138929636687,0.082509499920588,0,1.30012049207304,0,0.193341436584244,0,0.15350367472613,0,0.107420244868274,0,0.255679882248303,0.267096106940212,0.165284915360978,0.192190067365106,0.510450849978337,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0.404364963146632,0,0.421258456238981,0.48763373908959,0.243713489631284,0,0.545999645631943,0.424216295861138,0,0,0,0,0.578775534266688,0,0,0,0,0.286822704408103,0.0982490410131212,0.35667105148125,0.354761064070598,0,0,0.75894634753143,0,0.288666338176536,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0.320472213382419,0,0,0.185803175125719,0,0.213425530045242,0.478278818186467,0.59873811429845,0.383010740264733,0.211673582723883,0,0,0.228234679033192,0.783399478865116,0,0,0.321176150207399,0.201799707191048,0,0,0,0.223676107892416,0,1.36771666781428,1.11362469558097,1.23087398947712,1.08182271390393,0,0,0,0,0.121360521749513,0.111443384277478,0.568272293612826,0,0,0,0,0.140669416410513,0.111308705022906,0.16480387422676,0,0,0,0.251932747854276,0,0.123084805461069,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0.520855522170466,0.61221999997337,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0.23056390438806,0,0.108647371922008,0.31900115973192,0.183195186803725,0.533034776018635,0,0.156980256395025,0.332423363800313,0.451191321234361,0.19606253431774,0.335643173951685,1.13852239634511,0.317873157960757,0,0,0.282706142867882,0,0.995261931078505,0,0,2.37216902944498,1.97702302314405,1.98401704060365,0.202203398942031,0,0,0,0.19566461893209,0.728341138602278,0,0,0,0,0.751617097072463,0.414752765588989,0,0,0,0,0.569219092059585,0.138674673013139,0,0.195984794828755,0.0870592065804026,0.17472666824203,0.171986032471617,0.0967563312890851,0.365446585430928,0.246346371159628,0,0.0882561266915003,0,0.137041924646751,0.397429223405979,0.0633107959558787,0,0,0.213452994739353,0.39961921916426,0,0.114536596165916,0.171594997861965,0,0.49701014226173,0,0.135904206073614,0,0.203996435272644,0,0,0,0,0,12.0928182968485,0,0,0,0,0,0,0.134366944973453,0,0,0.472699093843342,0.824158583811665,0.471824806979294,0.196854963029498,0.254019996197353,0.795229689809303,0,0,0.550157746388935,0.415440338029185,1.5748172408605,2.32140586367385,0,0,0.0788057072991982,0.0524545881349981,0.422401346077626,0.35857467866569,0,0,0.662091970365432,0.25426853765475,0,0.864221491201268,0,0,0.492555124496034,0.511164065356265,0.339936274560377,0,0,0.387848869084652,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.18628920882415,0.415045904808692,0.124980407962107,0.606596470166591,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0.302461847526478,0.466311601748341,0.295710299979268,0.477890301491107,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0,0,0.398095888698616,0,0,0,0,0.192619830407303,0.214441591374926,1.04397716786085,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0,0.303859956177382,0.138258436151731,2.33832370607266,0.132864840313363,0.490696182767533,0,0.491545817507439,0,4.99968489637325,0,0,0,0,0.279759015438889,0,0.127894371303652,0.107824811396682,0.157265941855896,0.109209638192014,0.33946505990805,0,0.123935764259002,0,0,0.23658523500376,0,0.352675943690684,0,0.128458450192919,0,0,0,0,0.0691572524642179,0.161475645631851,0,0.0981477185010256,0,0.366857197043358,0,0.381382095467167,0,0,0,0,0.781514011233092,0.261906694481422,0,0,0.0675375846183947,0,0,0,0,0,0,0.175871244359621,0.127762427639595,0,0,0,0.227662191351298,0.0887023701626388,0.115233987555779,0,0,0.0657727735628491,0.118193840883968,0.333694205676207,0.156986185701028,0.157115589916002,0,0,0,0,0,1.42212250559454,0.348724276104376,0.173858272302579,0,0,0.17071847709395,0,0,0.118332000730565,0.426067023795788,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0.118920090777569,0.11294608203896,0.109940516745429,0.301925687133347,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0.169927114687817,0,0.193373663920732,2.39858774219829,0,0,0.240724100067505,0.730336388246517,0,0.143339583151451,0.315543124386369,0,0,0,0,0,0,0.126166424835079,0.546327859818478,0.126698501011437,1.01988829741982,0.26721740526556,0.275684698604535,0.50141507858475,0.151557396436479,0.267964130156178,0,0.310298987585686,0,0,0.129177819672012,0.372448285775147,0.112131862580613,0,0,0.217716747896961,0,0.134704106029175,0,0,0.244209805832924,0,0,0,0,0.122241444182866,0.406896178315738,0,0.402547587182052,0
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0.458480434487708,1.31360943119913,1.33808328233255,0,0.767658796194425,0,0.919421224478927,0.30120591877825,0,0.154934401160603,0.142169232487422,0.293600439334847,0.553995408531877,0.802177789880567,0.434021741431704,0,0,0,0.145398238779565,0,0,0,0.411167888021826,0.309706370895104,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0.188242339542605,0.545812300115692,0.224723484445085,0.612167784741805,0.641858054152187,1.27867425159808,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0.434377689410233,0,0.736555271975129,0.632924774881769,0.211255286311942,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,1.12101712596307,0.526768169550154,0.590129310341499,0.393010762749165,0.411202997999018,0,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0.34362744548263,0,0.318565414324097,0,0,0,0,0,0,0,0.604820229674197,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0.221729397462564,0.175669571386252,0.261958150995425,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0.367663080345869,0,0.357198913136319,0,0.225222960966644,3.06633274931766,0.949265659568129,0.183201743930407,0,0,0,0,0.12663051166458,0.397227542439656,0.286836620748814,0,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0,0.23486899728753,0.323745888736263,0,0.204154171254893,0,0,0,0.247266929278557,0,0.718618141816238,0.336672227908132,0.250237039743928,0.277064115484183,0,0.30648779579902,0.150238058906597,0.113432183160021,0.538168907066586,0,0,0.600182192168805,0,0.257640540045629,0,0.337552664482532,0,0,0.0920498986422993,0.323292113637624,0,0.302256294682921,0,0.193260853163297,0.272746120590835,0.286804595389004,0.243947412259191,0.265059536642971,0.232387885739037,0.310983165046111,0.252320850875628,0.72995471815166,0,0,2.76269842704961,0.464367928031979,0,0.118306800039844,0.168584690078102,0.482022059766964,0.441175890929576,0.217879444092406,0,0.134831308160164,0.588664395376038,0.38474715694639,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0,0,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0.290633938513962,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.1466765716419,0.387815147273333,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,1.42636905040718,0.434343920002738,0.61642896765115,0.537182889719687,0,0.591092280605782,0.431255149719035,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,0,0,0,0.664225598535437,0.737476674166813,0.0868836144680828,0,0,0,0.215714200818617,0.320182673410333,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0,0,0,0,0.154209693802656,0,0.246381468041427,0,0,0.120859449591622,0.200506470303285,0.0920809889358963,0.68888668898764,0.364182336013434,0,0,0,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0.223874754722178,0.219259876645935,0.261435451024901,0,0,0.325378394664303,0,0.183138929636687,0.082509499920588,0,1.30012049207304,0,0.193341436584244,0,0.15350367472613,0,0.107420244868274,0,0.255679882248303,0.267096106940212,0.165284915360978,0.192190067365106,0.510450849978337,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0.404364963146632,0,0.421258456238981,0.48763373908959,0.243713489631284,0,0.545999645631943,0.424216295861138,0,0,0,0,0.578775534266688,0,0,0,0,0.286822704408103,0.0982490410131212,0.35667105148125,0.354761064070598,0,0,0.75894634753143,0,0.288666338176536,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0.320472213382419,0,0,0.185803175125719,0,0.213425530045242,0.478278818186467,0.59873811429845,0.383010740264733,0.211673582723883,0,0,0.228234679033192,0.783399478865116,0,0,0.321176150207399,0.201799707191048,0,0,0,0.223676107892416,0,1.36771666781428,1.11362469558097,1.23087398947712,1.08182271390393,0,0,0,0,0.121360521749513,0.111443384277478,0.568272293612826,0,0,0,0,0.140669416410513,0.111308705022906,0.16480387422676,0,0,0,0.251932747854276,0,0.123084805461069,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0.520855522170466,0.61221999997337,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0.23056390438806,0,0.108647371922008,0.31900115973192,0.183195186803725,0.533034776018635,0,0.156980256395025,0.332423363800313,0.451191321234361,0.19606253431774,0.335643173951685,1.13852239634511,0.317873157960757,0,0,0.282706142867882,0,0.995261931078505,0,0,2.37216902944498,1.97702302314405,1.98401704060365,0.202203398942031,0,0,0,0.19566461893209,0.728341138602278,0,0,0,0,0.751617097072463,0.414752765588989,0,0,0,0,0.569219092059585,0.138674673013139,0,0.195984794828755,0.0870592065804026,0.17472666824203,0.171986032471617,0.0967563312890851,0.365446585430928,0.246346371159628,0,0.0882561266915003,0,0.137041924646751,0.397429223405979,0.0633107959558787,0,0,0.213452994739353,0.39961921916426,0,0.114536596165916,0.171594997861965,0,0.49701014226173,0,0.135904206073614,0,0.203996435272644,0,0,0,0,0,12.0928182968485,0,0,0,0,0,0,0.134366944973453,0,0,0.472699093843342,0.824158583811665,0.471824806979294,0.196854963029498,0.254019996197353,0.795229689809303,0,0,0.550157746388935,0.415440338029185,1.5748172408605,2.32140586367385,0,0,0.0788057072991982,0.0524545881349981,0.422401346077626,0.35857467866569,0,0,0.662091970365432,0.25426853765475,0,0.864221491201268,0,0,0.492555124496034,0.511164065356265,0.339936274560377,0,0,0.387848869084652,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.18628920882415,0.415045904808692,0.124980407962107,0.606596470166591,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0.302461847526478,0.466311601748341,0.295710299979268,0.477890301491107,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0,0,0.398095888698616,0,0,0,0,0.192619830407303,0.214441591374926,1.04397716786085,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0,0.303859956177382,0.138258436151731,2.33832370607266,0.132864840313363,0.490696182767533,0,0.491545817507439,0,4.99968489637325,0,0,0,0,0.279759015438889,0,0.127894371303652,0.107824811396682,0.157265941855896,0.109209638192014,0.33946505990805,0,0.123935764259002,0,0,0.23658523500376,0,0.352675943690684,0,0.128458450192919,0,0,0,0,0.0691572524642179,0.161475645631851,0,0.0981477185010256,0,0.366857197043358,0,0.381382095467167,0,0,0,0,0.781514011233092,0.261906694481422,0,0,0.0675375846183947,0,0,0,0,0,0,0.175871244359621,0.127762427639595,0,0,0,0.227662191351298,0.0887023701626388,0.115233987555779,0,0,0.0657727735628491,0.118193840883968,0.333694205676207,0.156986185701028,0.157115589916002,0,0,0,0,0,1.42212250559454,0.348724276104376,0.173858272302579,0,0,0.17071847709395,0,0,0.118332000730565,0.426067023795788,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0.118920090777569,0.11294608203896,0.109940516745429,0.301925687133347,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0.169927114687817,0,0.193373663920732,2.39858774219829,0,0,0.240724100067505,0.730336388246517,0,0.143339583151451,0.315543124386369,0,0,0,0,0,0,0.126166424835079,0.546327859818478,0.126698501011437,1.01988829741982,0.26721740526556,0.275684698604535,0.50141507858475,0.151557396436479,0.267964130156178,0,0.310298987585686,0,0,0.129177819672012,0.372448285775147,0.112131862580613,0,0,0.217716747896961,0,0.134704106029175,0,0,0.244209805832924,0,0,0,0,0.122241444182866,0.406896178315738,0,0.402547587182052,0
|short_description=p2@RBM19
|short_description=p2@RBM19
}}
}}

Latest revision as of 13:34, 16 September 2015

Short description:p2@RBM19
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_2_at_RBM19_5end
Coexpression cluster:C99_hairy_mycosis_submaxillary_salivary_cord_kidney_parotid
Association with transcript: 11bp_to_ENST00000545145_5end
EntrezGene:RBM19
HGNC: 29098
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0.0
2.5
5.0
7.5
10.0
12.5




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data