FFCP PHASE1:Hg19::chr1:236686501..236686513,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3964 | |EntrezGene=3964 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6569 | |HGNC=6569 | ||
|TSSclassifier=strong | |||
|UniProt=O00214 | |UniProt=O00214 | ||
|association_with_transcript=-225bp_to_ENST00000341872,ENST00000450372,NM_006499,NM_201543,uc001hxy.1,uc001hxz.1,uc009xgg.1_5end | |association_with_transcript=-225bp_to_ENST00000341872,ENST00000450372,NM_006499,NM_201543,uc001hxy.1,uc001hxz.1,uc009xgg.1_5end | ||
|cluster_id=chr1:236686501..236686513,+ | |||
|coexpression_cluster_id=C108 | |coexpression_cluster_id=C108 | ||
|description=CAGE_peak_8_at_LGALS8_5end | |description=CAGE_peak_8_at_LGALS8_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000181!6.89e-08!12;CL:0000417!6.89e-08!12;CL:0000668!6.89e-08!12;CL:0000414!6.89e-08!12;CL:0000412!6.89e-08!12;CL:0000182!6.89e-08!12;CL:0000223!8.72e-08!59 | |ontology_enrichment_celltype=CL:0000181!6.89e-08!12;CL:0000417!6.89e-08!12;CL:0000668!6.89e-08!12;CL:0000414!6.89e-08!12;CL:0000412!6.89e-08!12;CL:0000182!6.89e-08!12;CL:0000223!8.72e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0002231;1.71e-14;3!CL:0002327;2.53e-11;4 | |ontology_enrichment_celltype_v019=CL:0002231;1.71e-14;3!CL:0002327;2.53e-11;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002231,1.60e-14,3;CL:0002327,2.53e-11,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;6.62e-41;1!UBERON:0009847;1.71e-14;3!UBERON:0003353;1.71e-14;3 | |ontology_enrichment_development_v019=UBERON:0008425;6.62e-41;1!UBERON:0009847;1.71e-14;3!UBERON:0003353;1.71e-14;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5093;2.53e-11;4!DOID:1612;2.53e-11;4 | |ontology_enrichment_disease_v019=DOID:5093;2.53e-11;4!DOID:1612;2.53e-11;4 | ||
|ontology_enrichment_disease_v019_2=DOID:5093,2.53e-11,4;DOID:1612,2.53e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0002530!1.06e-13!59;UBERON:0002367!9.22e-13!11;UBERON:0010147!9.22e-13!11;UBERON:0009846!9.22e-13!11;UBERON:0003353!9.22e-13!11;UBERON:0004902!9.22e-13!11;UBERON:0003820!9.22e-13!11;UBERON:0009847!9.22e-13!11;UBERON:0003929!9.31e-13!54;UBERON:0005911!2.77e-12!82;UBERON:0003937!1.12e-11!12;UBERON:0005399!1.12e-11!12;UBERON:0004921!1.65e-11!129;UBERON:0004185!1.65e-11!129;UBERON:0005153!7.16e-11!37;UBERON:0002365!1.07e-10!31;UBERON:0002330!1.07e-10!31;UBERON:0001046!3.88e-10!19;UBERON:0000162!5.64e-10!14;UBERON:0001353!5.64e-10!14;UBERON:0000163!5.64e-10!14;UBERON:0006866!5.64e-10!14;UBERON:0000164!5.64e-10!14;UBERON:0000931!5.64e-10!14;UBERON:0004122!2.71e-09!15;UBERON:0001007!6.33e-09!155;UBERON:0001555!6.33e-09!155;UBERON:0007026!6.33e-09!155;UBERON:0000077!6.95e-09!130;UBERON:0004119!7.25e-08!169;UBERON:0000925!7.25e-08!169;UBERON:0006595!7.25e-08!169;UBERON:0007499!1.13e-07!25;UBERON:0005157!1.76e-07!51;UBERON:0002107!2.34e-07!19;UBERON:0006925!2.34e-07!19;UBERON:0008836!2.34e-07!19;UBERON:0009856!2.35e-07!26;UBERON:0000161!4.43e-07!35;UBERON:0001736!4.78e-07!1;UBERON:0006298!4.78e-07!1 | |ontology_enrichment_uberon=UBERON:0002530!1.06e-13!59;UBERON:0002367!9.22e-13!11;UBERON:0010147!9.22e-13!11;UBERON:0009846!9.22e-13!11;UBERON:0003353!9.22e-13!11;UBERON:0004902!9.22e-13!11;UBERON:0003820!9.22e-13!11;UBERON:0009847!9.22e-13!11;UBERON:0003929!9.31e-13!54;UBERON:0005911!2.77e-12!82;UBERON:0003937!1.12e-11!12;UBERON:0005399!1.12e-11!12;UBERON:0004921!1.65e-11!129;UBERON:0004185!1.65e-11!129;UBERON:0005153!7.16e-11!37;UBERON:0002365!1.07e-10!31;UBERON:0002330!1.07e-10!31;UBERON:0001046!3.88e-10!19;UBERON:0000162!5.64e-10!14;UBERON:0001353!5.64e-10!14;UBERON:0000163!5.64e-10!14;UBERON:0006866!5.64e-10!14;UBERON:0000164!5.64e-10!14;UBERON:0000931!5.64e-10!14;UBERON:0004122!2.71e-09!15;UBERON:0001007!6.33e-09!155;UBERON:0001555!6.33e-09!155;UBERON:0007026!6.33e-09!155;UBERON:0000077!6.95e-09!130;UBERON:0004119!7.25e-08!169;UBERON:0000925!7.25e-08!169;UBERON:0006595!7.25e-08!169;UBERON:0007499!1.13e-07!25;UBERON:0005157!1.76e-07!51;UBERON:0002107!2.34e-07!19;UBERON:0006925!2.34e-07!19;UBERON:0008836!2.34e-07!19;UBERON:0009856!2.35e-07!26;UBERON:0000161!4.43e-07!35;UBERON:0001736!4.78e-07!1;UBERON:0006298!4.78e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002367;2.17e-15;11!UBERON:0010147;2.17e-15;11!UBERON:0003937;3.36e-14;12!UBERON:0005399;3.36e-14;12!UBERON:0001911;2.53e-11;4!UBERON:0003101;3.26e-08;22!UBERON:0000079;3.26e-08;22!UBERON:0000077;7.24e-07;27 | |ontology_enrichment_uberon_v019=UBERON:0002367;2.17e-15;11!UBERON:0010147;2.17e-15;11!UBERON:0003937;3.36e-14;12!UBERON:0005399;3.36e-14;12!UBERON:0001911;2.53e-11;4!UBERON:0003101;3.26e-08;22!UBERON:0000079;3.26e-08;22!UBERON:0000077;7.24e-07;27 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002367,2.33e-15,11;UBERON:0010147,2.33e-15,11;UBERON:0009846,2.33e-15,11;UBERON:0003353,2.33e-15,11;UBERON:0004902,2.33e-15,11;UBERON:0003820,2.33e-15,11;UBERON:0009847,2.33e-15,11;UBERON:0003937,3.59e-14,12;UBERON:0005399,3.59e-14,12;UBERON:0000162,2.66e-12,14;UBERON:0001353,2.66e-12,14;UBERON:0000163,2.66e-12,14;UBERON:0006866,2.66e-12,14;UBERON:0000164,2.66e-12,14;UBERON:0000931,2.66e-12,14;UBERON:0004122,1.50e-11,15;UBERON:0001911,2.53e-11,4;UBERON:0005333,2.53e-11,4;UBERON:0008425,2.53e-11,4;UBERON:0005311,2.53e-11,4;UBERON:0005153,1.89e-10,37;UBERON:0001046,2.46e-09,19;UBERON:0005157,2.16e-08,47;UBERON:0003101,3.39e-08,22;UBERON:0000079,3.39e-08,22;UBERON:0002530,7.84e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69203229428271,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23649213977267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.1177799981245,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.787831823072237,0.412079291905832,0.606631894687664,0.590564889088493,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0.5013797880454,1.83807346058077,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,1.00108261702862,0.470958557103084,0,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0.301925687133347,0,0,0.940634592723046,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69203229428271,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23649213977267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.1177799981245,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.787831823072237,0.412079291905832,0.606631894687664,0.590564889088493,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0.5013797880454,1.83807346058077,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,1.00108261702862,0.470958557103084,0,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0.301925687133347,0,0,0.940634592723046,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p8@LGALS8 | |short_description=p8@LGALS8 | ||
}} | }} |
Latest revision as of 14:17, 16 September 2015
Short description: | p8@LGALS8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LGALS8_5end |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | -225bp_to_ENST00000341872, ENST00000450372, NM_006499, NM_201543, uc001hxy.1, uc001hxz.1, uc009xgg.1_5end |
EntrezGene: | LGALS8 |
HGNC: | 6569 |
UniProt: | O00214 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of prostate | 1.60e-14 | 3 |
mammary gland epithelial cell | 2.53e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
prostate gland | 2.33e-15 | 11 |
male accessory sex gland | 2.33e-15 | 11 |
embryonic cloacal epithelium | 2.33e-15 | 11 |
epithelium of hindgut | 2.33e-15 | 11 |
urogenital sinus epithelium | 2.33e-15 | 11 |
prostate bud | 2.33e-15 | 11 |
prostate field | 2.33e-15 | 11 |
sex gland | 3.59e-14 | 12 |
male reproductive gland | 3.59e-14 | 12 |
cloaca | 2.66e-12 | 14 |
anal region | 2.66e-12 | 14 |
embryonic cloaca | 2.66e-12 | 14 |
terminal part of digestive tract | 2.66e-12 | 14 |
primitive urogenital sinus | 2.66e-12 | 14 |
proctodeum | 2.66e-12 | 14 |
genitourinary system | 1.50e-11 | 15 |
mammary gland | 2.53e-11 | 4 |
mammary bud | 2.53e-11 | 4 |
mammary ridge | 2.53e-11 | 4 |
mammary placode | 2.53e-11 | 4 |
epithelial bud | 1.89e-10 | 37 |
hindgut | 2.46e-09 | 19 |
epithelial fold | 2.16e-08 | 47 |
male organism | 3.39e-08 | 22 |
male reproductive system | 3.39e-08 | 22 |
gland | 7.84e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.53e-11 | 4 |
breast cancer | 2.53e-11 | 4 |