FFCP PHASE1:Hg19::chr10:120925158..120925231,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:120925158..120925231,- to FFCP PHASE1:Hg19::chr10:120925158..120925231,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=119559 | |EntrezGene=119559 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16088 | |HGNC=16088 | ||
|TSSclassifier=strong | |||
|UniProt=E9PGB5,Q6P4A7 | |UniProt=E9PGB5,Q6P4A7 | ||
|association_with_transcript=0bp_to_ENST00000330036,ENST00000355697,ENST00000461438,NM_213649,uc001lea.2,uc001leb.2_5end | |||
|cluster_id=chr10:120925158..120925231,- | |||
|description=CAGE_peak_1_at_SFXN4_5end | |||
|id=chr10:120925158..120925231,- | |||
|ontology_enrichment_celltype=CL:0000066!4.37e-08!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.15e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0003104;7.85e-08;31 | |||
|ontology_enrichment_disease=DOID:14566!1.35e-22!239;DOID:162!5.45e-22!235;DOID:0050687!2.03e-15!143;DOID:2531!1.43e-11!51;DOID:0060083!1.43e-11!51;DOID:305!7.09e-11!106;DOID:1240!2.99e-10!39;DOID:8692!1.24e-08!31;DOID:0050686!2.24e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.02e-08;31!DOID:1240;2.41e-08;39!DOID:2531;1.01e-07;51!DOID:0060083;1.01e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.35e-22,239;DOID:162,5.45e-22,235;DOID:0050687,2.03e-15,143;DOID:2531,1.43e-11,51;DOID:0060083,1.43e-11,51;DOID:305,7.09e-11,106;DOID:1240,2.99e-10,39;DOID:8692,1.24e-08,31;DOID:0050686,2.24e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0000481!1.79e-12!347;UBERON:0002346!8.84e-09!90;UBERON:0004921!2.68e-08!129;UBERON:0004185!2.68e-08!129;UBERON:0000924!3.86e-08!173;UBERON:0006601!3.86e-08!173;UBERON:0001007!4.00e-08!155;UBERON:0001555!4.00e-08!155;UBERON:0007026!4.00e-08!155;UBERON:0000064!5.34e-08!219;UBERON:0004119!1.16e-07!169;UBERON:0000925!1.16e-07!169;UBERON:0006595!1.16e-07!169;UBERON:0003075!2.01e-07!86;UBERON:0007284!2.01e-07!86;UBERON:0000073!2.13e-07!94;UBERON:0001016!2.13e-07!94;UBERON:0000033!2.86e-07!123;UBERON:0000153!2.91e-07!129;UBERON:0007811!2.91e-07!129;UBERON:0001041!4.30e-07!98;UBERON:0004121!4.56e-07!169;UBERON:0001049!4.66e-07!57;UBERON:0005068!4.66e-07!57;UBERON:0006241!4.66e-07!57;UBERON:0007135!4.66e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,1.93e-12,223;UBERON:0002346,4.92e-10,86;UBERON:0003075,1.44e-08,82;UBERON:0007284,1.44e-08,82;UBERON:0004121,3.61e-08,171;UBERON:0000924,3.61e-08,171;UBERON:0006601,3.61e-08,171;UBERON:0010371,1.28e-07,104;UBERON:0004921,1.46e-07,118;UBERON:0001007,1.63e-07,145;UBERON:0001555,1.63e-07,145;UBERON:0007026,1.63e-07,145;UBERON:0010314,2.23e-07,132;UBERON:0004119,3.28e-07,160;UBERON:0000925,3.28e-07,160;UBERON:0006595,3.28e-07,160;UBERON:0001049,6.30e-07,56;UBERON:0005068,6.30e-07,56;UBERON:0006241,6.30e-07,56;UBERON:0007135,6.30e-07,56;UBERON:0003056,9.22e-07,61 | |||
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| ||
|short_description=p1@SFXN4 | |||
}} | }} |
Latest revision as of 17:13, 16 September 2015
Short description: | p1@SFXN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SFXN4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000330036, ENST00000355697, ENST00000461438, NM_213649, uc001lea.2, uc001leb.2_5end |
EntrezGene: | SFXN4 |
HGNC: | 16088 |
UniProt: | E9PGB5Q6P4A7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.15e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 1.93e-12 | 223 |
neurectoderm | 4.92e-10 | 86 |
neural plate | 1.44e-08 | 82 |
presumptive neural plate | 1.44e-08 | 82 |
ectoderm-derived structure | 3.61e-08 | 171 |
ectoderm | 3.61e-08 | 171 |
presumptive ectoderm | 3.61e-08 | 171 |
ecto-epithelium | 1.28e-07 | 104 |
subdivision of digestive tract | 1.46e-07 | 118 |
digestive system | 1.63e-07 | 145 |
digestive tract | 1.63e-07 | 145 |
primitive gut | 1.63e-07 | 145 |
structure with developmental contribution from neural crest | 2.23e-07 | 132 |
endoderm-derived structure | 3.28e-07 | 160 |
endoderm | 3.28e-07 | 160 |
presumptive endoderm | 3.28e-07 | 160 |
neural tube | 6.30e-07 | 56 |
neural rod | 6.30e-07 | 56 |
future spinal cord | 6.30e-07 | 56 |
neural keel | 6.30e-07 | 56 |
pre-chordal neural plate | 9.22e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.35e-22 | 239 |
cancer | 5.45e-22 | 235 |
cell type cancer | 2.03e-15 | 143 |
hematologic cancer | 1.43e-11 | 51 |
immune system cancer | 1.43e-11 | 51 |
carcinoma | 7.09e-11 | 106 |
leukemia | 2.99e-10 | 39 |
myeloid leukemia | 1.24e-08 | 31 |
organ system cancer | 2.24e-08 | 137 |