FFCP PHASE1:Hg19::chr6:167525277..167525292,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1235 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1607 | |||
|TSSclassifier=strong | |||
|UniProt=P51684 | |||
|association_with_transcript=-2bp_to_ENST00000400926,NM_004367,uc010kkm.2_5end | |||
|cluster_id=chr6:167525277..167525292,+ | |||
|coexpression_cluster_id=C103 | |||
|description=CAGE_peak_3_at_CCR6_5end | |||
|id=chr6:167525277..167525292,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.24e-44!140;CL:0002087!6.55e-41!119;CL:0002031!4.58e-35!124;CL:0000838!2.44e-32!52;CL:0000542!1.90e-31!53;CL:0000051!1.90e-31!53;CL:0000988!7.07e-31!182;CL:0000037!1.08e-30!172;CL:0000566!1.08e-30!172;CL:0002032!1.91e-29!165;CL:0000837!1.91e-29!165;CL:0000791!5.20e-21!18;CL:0000789!5.20e-21!18;CL:0002420!5.20e-21!18;CL:0002419!5.20e-21!18;CL:0000790!5.20e-21!18;CL:0000084!1.02e-16!25;CL:0000827!1.02e-16!25;CL:0000625!9.83e-15!11;CL:0002057!1.38e-13!42;CL:0000945!2.30e-13!24;CL:0000826!2.30e-13!24;CL:0000236!1.01e-12!14;CL:0000860!3.84e-12!45;CL:0000766!7.63e-12!76;CL:0002009!2.77e-10!65;CL:0002194!5.43e-10!63;CL:0000576!5.43e-10!63;CL:0000040!5.43e-10!63;CL:0000559!5.43e-10!63;CL:0000624!1.60e-09!6;CL:0000080!8.32e-09!6;CL:0000557!1.09e-08!71;CL:0000839!3.60e-08!70;CL:0000763!5.90e-07!112;CL:0000049!5.90e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.07e-33;18!CL:0000789;3.07e-33;18!CL:0002419;3.07e-33;18!CL:0000084;2.92e-25;25!CL:0000542;2.93e-23;53!CL:0000625;8.93e-23;11!CL:0000236;2.76e-19;13!CL:0000624;2.36e-14;6!CL:0002087;8.10e-12;104!CL:0000945;8.39e-11;24!CL:0000094;7.89e-09;8!CL:0000081;1.38e-08;11!CL:0000898;7.27e-08;3!CL:0000738;9.62e-08;136!CL:0000226;1.20e-07;3!CL:0000842;1.20e-07;3!CL:0000623;1.67e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.37e-38,52;CL:0000542,1.16e-37,53;CL:0000051,1.16e-37,53;CL:0000738,8.56e-36,136;CL:0000791,3.08e-33,18;CL:0000789,3.08e-33,18;CL:0002420,3.08e-33,18;CL:0002419,3.08e-33,18;CL:0000790,3.08e-33,18;CL:0002087,1.64e-31,115;CL:0000988,1.43e-27,177;CL:0002031,2.61e-26,120;CL:0000037,5.60e-26,168;CL:0000084,3.02e-25,25;CL:0000827,3.02e-25,25;CL:0002032,8.08e-24,161;CL:0000837,8.08e-24,161;CL:0000625,9.25e-23,11;CL:0000236,1.08e-17,14;CL:0000624,2.28e-14,6;CL:0000945,8.86e-11,24;CL:0000826,8.86e-11,24;CL:0000094,8.19e-09,8;CL:0000081,1.42e-08,11;CL:0000898,7.04e-08,3;CL:0000226,1.20e-07,3;CL:0000842,1.20e-07,3;CL:0000623,1.56e-07,3;CL:0000825,1.56e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.07e-33;18!CL:0000051;2.93e-23;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.58e-19!102;UBERON:0003061!2.58e-19!102;UBERON:0000178!2.71e-19!15;UBERON:0000179!2.71e-19!15;UBERON:0000463!2.71e-19!15;UBERON:0002193!3.97e-18!112;UBERON:0007023!4.89e-08!115;UBERON:0002371!8.35e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.91e-30;15!UBERON:0000179;3.91e-30;15!UBERON:0000463;3.91e-30;15!UBERON:0002390;4.34e-15;32!UBERON:0002193;2.02e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.01e-30,15;UBERON:0000179,4.01e-30,15;UBERON:0000463,4.01e-30,15;UBERON:0002390,1.59e-12,98;UBERON:0003061,1.59e-12,98;UBERON:0002193,1.68e-12,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22261449196722,0.903106483949403,0.708397031823113,1.96682138424452,1.15148819429164,3.71558695958582,0,0,0,0,0.284338464974843,0,2.21598163412751,4.21143339687298,3.90619567288533,0.671746422719773,2.59114932815184,0.77272670290256,0.145398238779565,0,0,0.697287110717054,0.822335776043652,0.309706370895104,0.28769239232215,1.2808035326455,0.47296445977717,1.03423704220986,3.22742341791913,0,0.376484679085209,2.18324920046277,0.898893937780338,0.918251677112708,2.24650318953266,1.27867425159808,0.329851300186716,0.598390972864896,0,0.580418477257168,1.70215567407342,0,0.502497330513487,2.08593167368081,0.434377689410233,0.605399502633369,5.52416453981347,0.949387162322653,0,0,0,0,0,0,0,0,0,33.4392864476513,20.2071286166989,24.9062591081795,20.4830506831923,17.2170274425485,21.8405927182704,25.1197051658248,18.1270213361719,7.96898156753228,4.11066032559657,4.58727873750275,0,10.6496626966492,0.263384084775077,23.4084626435461,62.8817220398664,86.5582310787934,1.5046784585161,6.8443675993054,9.9424039204294,1.94826728407911,5.79334375802903,187.074751246522,238.148936677393,157.066240983709,8.96639238079726,4.81219585971549,0.164437904603676,0.276350017785848,0,0.444859689486181,0.267540828089713,0,2.94604291013672,78.5602011883939,90.7176456074143,54.3992337841931,16.2468361305289,4.55758417699493,3.8018081777935,18.9724650037994,22.3976569520232,14.9916871862815,10.8917535940248,9.85353596305256,24.7976294166421,24.8719382078662,6.22744936696036,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.523916301990851,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22462922052443,38.7780264148325,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8852605814043,17.4658335636209,7.9572682493444,0,0,0,0,0,0,0,7.0450637284126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.2595393176067,6.25571182373989,22.8396973699371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.470719003883896,0,0,0,0,7.10426652925037,9.1756464857085,6.83576624608995,12.1498205483472,20.1567513812235,9.07862635669804,12.9607544937148,11.8968776444141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.796991953004279,8.01223355040328,0,0,0,0,0,0,0,0.394573622547734,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32686346755009,1.22206028986725,36.7686199563971,5.56037725259263,4.69898772774549,0,0,0,0,0,0,0,1.20990716048664,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,1.70762395791482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0,0.508039992394707,0,0,0,0,0,1.5748172408605,0,0.0607495566580247,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.961086713109252,0.628817220398664,2.07119527673598,2.48083010905975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,1.86010776438708,0.654261577023377,0,0,0,5.39965968808311,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,1.98484471355718,0,0,0,0,0.606965604236632,0,0.266107110487916,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77500563648273,1.96703604453562,0,0,0,0.196308467114945,0,0,0,5.45106724283151,7.67048866885568,0,0,0,0,0,1.83491713361816,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0.714193294391221,0.968833647540092,0.993195428733726,0,0,0,0.435433495793923,0,8.68841483888179,0.430333232356058,0.332660356546013,0,0,0,0,0,0,0,0,8.05095174364105,0.320568492303233 | |||
|short_description=p3@CCR6 | |||
}} |
Latest revision as of 21:05, 16 September 2015
Short description: | p3@CCR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CCR6_5end |
Coexpression cluster: | C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils |
Association with transcript: | -2bp_to_ENST00000400926, NM_004367, uc010kkm.2_5end |
EntrezGene: | CCR6 |
HGNC: | 1607 |
UniProt: | P51684 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.37e-38 | 52 |
lymphocyte | 1.16e-37 | 53 |
common lymphoid progenitor | 1.16e-37 | 53 |
leukocyte | 8.56e-36 | 136 |
mature alpha-beta T cell | 3.08e-33 | 18 |
alpha-beta T cell | 3.08e-33 | 18 |
immature T cell | 3.08e-33 | 18 |
mature T cell | 3.08e-33 | 18 |
immature alpha-beta T cell | 3.08e-33 | 18 |
nongranular leukocyte | 1.64e-31 | 115 |
hematopoietic cell | 1.43e-27 | 177 |
hematopoietic lineage restricted progenitor cell | 2.61e-26 | 120 |
hematopoietic stem cell | 5.60e-26 | 168 |
T cell | 3.02e-25 | 25 |
pro-T cell | 3.02e-25 | 25 |
hematopoietic oligopotent progenitor cell | 8.08e-24 | 161 |
hematopoietic multipotent progenitor cell | 8.08e-24 | 161 |
CD8-positive, alpha-beta T cell | 9.25e-23 | 11 |
B cell | 1.08e-17 | 14 |
CD4-positive, alpha-beta T cell | 2.28e-14 | 6 |
lymphocyte of B lineage | 8.86e-11 | 24 |
pro-B cell | 8.86e-11 | 24 |
granulocyte | 8.19e-09 | 8 |
blood cell | 1.42e-08 | 11 |
naive T cell | 7.04e-08 | 3 |
single nucleate cell | 1.20e-07 | 3 |
mononuclear cell | 1.20e-07 | 3 |
natural killer cell | 1.56e-07 | 3 |
pro-NK cell | 1.56e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.01e-30 | 15 |
haemolymphatic fluid | 4.01e-30 | 15 |
organism substance | 4.01e-30 | 15 |
hematopoietic system | 1.59e-12 | 98 |
blood island | 1.59e-12 | 98 |
hemolymphoid system | 1.68e-12 | 108 |