FFCP PHASE1:Hg19::chr13:24846799..24846808,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221178 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23222 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-18bp_to_ENST00000488060_5end | |||
|cluster_id=chr13:24846799..24846808,+ | |||
|description=CAGE_peak_18_at_SPATA13_5end | |||
|id=chr13:24846799..24846808,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.43e-08!42;CL:0000080!4.75e-08!6;CL:0000860!8.26e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000771;3.52e-11;2!CL:0000081;3.50e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000771,3.02e-11,2;CL:0000081,3.37e-08,11 | |||
|ontology_enrichment_development_v019=UBERON:0004872;2.51e-12;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.02e-22!57;UBERON:0005068!2.02e-22!57;UBERON:0006241!2.02e-22!57;UBERON:0007135!2.02e-22!57;UBERON:0002616!2.15e-19!59;UBERON:0002780!8.91e-18!41;UBERON:0001890!8.91e-18!41;UBERON:0006240!8.91e-18!41;UBERON:0001893!2.63e-17!34;UBERON:0003080!2.97e-17!42;UBERON:0002791!1.12e-15!33;UBERON:0007023!1.45e-15!115;UBERON:0000955!1.92e-15!69;UBERON:0006238!1.92e-15!69;UBERON:0002020!7.81e-15!34;UBERON:0003528!7.81e-15!34;UBERON:0002346!1.45e-14!90;UBERON:0001869!8.66e-14!32;UBERON:0001017!1.66e-13!82;UBERON:0000073!2.10e-13!94;UBERON:0001016!2.10e-13!94;UBERON:0003075!7.93e-13!86;UBERON:0007284!7.93e-13!86;UBERON:0005743!1.30e-12!86;UBERON:0002420!4.19e-11!9;UBERON:0007245!4.19e-11!9;UBERON:0010009!4.19e-11!9;UBERON:0010011!4.19e-11!9;UBERON:0000454!4.19e-11!9;UBERON:0002308!7.92e-11!9;UBERON:0000125!7.92e-11!9;UBERON:0003056!1.43e-10!61;UBERON:0002106!2.34e-10!3;UBERON:0004854!2.34e-10!3;UBERON:0009034!2.34e-10!3;UBERON:0002095!2.34e-10!3;UBERON:0004782!2.34e-10!3;UBERON:0003281!2.34e-10!3;UBERON:0009664!2.34e-10!3;UBERON:0002296!2.34e-10!3;UBERON:0005602!2.34e-10!3;UBERON:0001179!2.34e-10!3;UBERON:0006293!2.34e-10!3;UBERON:0009663!3.47e-10!7;UBERON:0001872!9.81e-10!5;UBERON:0001950!1.36e-09!20;UBERON:0002298!4.72e-09!8;UBERON:0002619!1.32e-08!22;UBERON:0002390!5.04e-08!102;UBERON:0003061!5.04e-08!102;UBERON:0000956!2.04e-07!25;UBERON:0000203!2.04e-07!25;UBERON:0004177!4.44e-07!7;UBERON:0002193!7.23e-07!112;UBERON:0000369!9.18e-07!4;UBERON:0002435!9.18e-07!4;UBERON:0000204!9.18e-07!4;UBERON:0010082!9.18e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;2.38e-27;3!UBERON:0002336;5.71e-21;1!UBERON:0011215;5.71e-21;1!UBERON:0001018;5.71e-21;1!UBERON:0002473;5.71e-21;1!UBERON:0005340;5.71e-21;1!UBERON:0003544;5.71e-21;1!UBERON:0005970;5.71e-21;1!UBERON:0002316;5.71e-21;1!UBERON:0001020;5.71e-21;1!UBERON:0002437;5.71e-21;1!UBERON:0004177;7.51e-17;5!UBERON:0005057;7.51e-17;5!UBERON:0001875;3.52e-11;2!UBERON:0005162;3.52e-11;2!UBERON:0000122;3.52e-11;2!UBERON:0006514;3.52e-11;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.11e-27,3;UBERON:0004854,3.11e-27,3;UBERON:0009034,3.11e-27,3;UBERON:0002095,3.11e-27,3;UBERON:0004782,3.11e-27,3;UBERON:0003281,3.11e-27,3;UBERON:0009664,3.11e-27,3;UBERON:0002296,3.11e-27,3;UBERON:0005602,3.11e-27,3;UBERON:0001179,3.11e-27,3;UBERON:0006293,3.11e-27,3;UBERON:0002336,3.45e-21,1;UBERON:0011215,3.45e-21,1;UBERON:0001018,3.45e-21,1;UBERON:0002473,3.45e-21,1;UBERON:0005340,3.45e-21,1;UBERON:0003544,3.45e-21,1;UBERON:0005970,3.45e-21,1;UBERON:0002316,3.45e-21,1;UBERON:0001020,3.45e-21,1;UBERON:0002437,3.45e-21,1;UBERON:0004177,2.82e-12,7;UBERON:0005057,2.82e-12,7;UBERON:0005162,2.73e-11,2;UBERON:0000122,2.73e-11,2;UBERON:0001875,4.09e-11,2;UBERON:0006514,4.09e-11,2;UBERON:0000945,7.30e-11,8;UBERON:0010039,7.30e-11,8;UBERON:0004457,1.52e-07,12;UBERON:0000042,1.52e-07,12;UBERON:0003887,1.52e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0.464858073811369,0,0,0.575384784644301,0.256160706529101,0.47296445977717,0,0.645484683583826,0,0.188242339542605,0,0.224723484445085,0.306083892370903,0,1.27867425159808,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0.285012743741249,0,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0.393010762749165,0.205601498999509,0,0,0,0,0.445641827540694,0,0,0.270803863765016,0.25618263945135,1.30059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94130590316755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355709216742071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07564790076435,0.370691816839509,0.522109747527277,1.34802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23214841002794,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443716206147409,0.683060432355218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,3.61711666268562,0,0,0.850299680406731,0.123935764259002,0.558644917973244,0,0,0,0,0,0.256916900385838,0,0.478901577171454,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.270150338473579,0.781078098613847,0.413373593002368,0.317079050969534,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.475788130837822,0.328863867814245,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,0,0,0.594092800654172,0,0,1.03382309777839,2.90060495881097,0.699588091474503,0,0,0,0,0,0.430018749454354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0.310298987585686,0,0,0,0.0620747142958579,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p18@SPATA13 | |||
}} |
Latest revision as of 21:28, 16 September 2015
Short description: | p18@SPATA13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_SPATA13_5end |
Coexpression cluster: | NA |
Association with transcript: | -18bp_to_ENST00000488060_5end |
EntrezGene: | SPATA13 |
HGNC: | 23222 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eosinophil | 3.02e-11 | 2 |
blood cell | 3.37e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.11e-27 | 3 |
gastrointestinal system mesentery | 3.11e-27 | 3 |
stomach region | 3.11e-27 | 3 |
mesentery | 3.11e-27 | 3 |
gastrointestinal system serosa | 3.11e-27 | 3 |
mesentery of stomach | 3.11e-27 | 3 |
gut mesentery | 3.11e-27 | 3 |
dorsal mesentery | 3.11e-27 | 3 |
dorsal mesogastrium | 3.11e-27 | 3 |
peritoneal cavity | 3.11e-27 | 3 |
spleen primordium | 3.11e-27 | 3 |
corpus callosum | 3.45e-21 | 1 |
central nervous system cell part cluster | 3.45e-21 | 1 |
axon tract | 3.45e-21 | 1 |
intercerebral commissure | 3.45e-21 | 1 |
dorsal telencephalic commissure | 3.45e-21 | 1 |
brain white matter | 3.45e-21 | 1 |
brain commissure | 3.45e-21 | 1 |
white matter | 3.45e-21 | 1 |
nervous system commissure | 3.45e-21 | 1 |
cerebral hemisphere white matter | 3.45e-21 | 1 |
hemopoietic organ | 2.82e-12 | 7 |
immune organ | 2.82e-12 | 7 |
multi cell component structure | 2.73e-11 | 2 |
neuron projection bundle | 2.73e-11 | 2 |
globus pallidus | 4.09e-11 | 2 |
pallidum | 4.09e-11 | 2 |
stomach | 7.30e-11 | 8 |
food storage organ | 7.30e-11 | 8 |
cavity lining | 1.52e-07 | 12 |
serous membrane | 1.52e-07 | 12 |
intraembryonic coelom | 1.52e-07 | 12 |