FFCP PHASE1:Hg19::chr2:30670077..30670125,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=253558 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26756 | |||
|TSSclassifier=strong | |||
|UniProt=Q6UWP7,A6H8Z7,C9JMW2,C9JA02,C9JXY8,C9J5S5 | |||
|association_with_transcript=0bp_to_ENST00000309052,ENST00000319406,ENST00000359433,ENST00000379509,ENST00000444270,ENST00000465200,ENST00000465538,ENST00000466477,ENST00000488144,ENST00000491680,NM_182551,uc002rnj.2,uc010ymp.1_5end | |||
|cluster_id=chr2:30670077..30670125,+ | |||
|coexpression_cluster_id=C102 | |||
|description=CAGE_peak_1_at_LCLAT1_5end | |||
|id=chr2:30670077..30670125,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001041;8.35e-09;30 | |||
|ontology_enrichment_disease=DOID:14566!7.72e-30!239;DOID:162!2.23e-29!235;DOID:0050687!1.88e-27!143;DOID:305!3.29e-23!106;DOID:0050686!1.02e-13!137;DOID:7!2.15e-09!39;DOID:0050615!7.93e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:7;1.44e-07;39!DOID:0050615;5.43e-07;16!DOID:305;7.49e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,7.51e-30,239;DOID:162,2.16e-29,235;DOID:0050687,1.82e-27,143;DOID:305,3.19e-23,106;DOID:0050686,1.02e-13,137;DOID:7,2.15e-09,39;DOID:0050615,7.93e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0001007!2.08e-14!155;UBERON:0001555!2.08e-14!155;UBERON:0007026!2.08e-14!155;UBERON:0004119!2.27e-12!169;UBERON:0000925!2.27e-12!169;UBERON:0006595!2.27e-12!169;UBERON:0004921!1.69e-11!129;UBERON:0004185!1.69e-11!129;UBERON:0000160!3.82e-10!27;UBERON:0005911!6.36e-10!82;UBERON:0005409!1.37e-09!35;UBERON:0000077!8.66e-09!130;UBERON:0002108!2.01e-07!14;UBERON:0000949!3.83e-07!45;UBERON:0003929!4.83e-07!54;UBERON:0002114!9.43e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.81e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.46e-11,145;UBERON:0001555,1.46e-11,145;UBERON:0007026,1.46e-11,145;UBERON:0005911,6.35e-10,82;UBERON:0004119,7.75e-10,160;UBERON:0000925,7.75e-10,160;UBERON:0006595,7.75e-10,160;UBERON:0004921,4.72e-09,118;UBERON:0000949,3.83e-07,45;UBERON:0003929,4.83e-07,54 | |||
|phase1_expression=9.81063248061006,7.92171938396638,16.2097564710367,7.00513088471913,8.49226079411847,8.72338524100369,0,5.05375898741465,1.56711376919903,5.16041266653169,0.697801167972428,8.95609625733706,7.12170841216825,8.53987835424322,7.29074226601415,8.74022690387308,5.42425075221579,4.38186054232424,3.41552959153355,7.75662665883764,5.91602004608334,5.32873026512749,6.86966369114536,10.676205155685,10.168953807179,6.72437970581971,7.38905305049512,7.32010266217217,1.57345710739562,4.22212337906934,1.85779347979291,5.51652734687356,8.13255980701275,7.02532619316897,5.88750724410292,8.10364625178303,4.69760702935756,4.43196326825502,2.00544447470142,2.38711957787437,3.58264758783879,3.88672399222775,3.34848237924443,2.32637182047304,0.377875943688809,1.4555043671269,1.85943229524548,1.6446715520873,0.929119112685311,0.28769239232215,1.0246428261164,0.945928919554341,1.72372840368309,1.93645405075148,0,1.12945403725563,0.545812300115692,1.12361742222542,0.918251677112708,1.60464513538047,0,2.30895910130701,0.199463657621632,2.13112375266347,0.580418477257168,1.13477044938228,1.24564449799115,0.251248665256743,0,0.868755378820466,2.42159801053347,0.368277635987565,1.58231193720442,4.22510572623884,2.76385589954557,1.67726916406701,1.68492946719743,1.65194582125657,1.92870704036496,1.99508920618874,3.38158351238453,1.82664153764634,8.79981222306614,12.561188059029,9.7846017924991,9.38806489646316,8.40831572775626,10.9202963591352,5.94940385506376,11.4486450544244,6.26134266020393,5.28513470433845,6.49864487812889,6.60856642895129,6.72610275577843,6.847986204152,6.68813218387032,8.64623678048162,5.14003747498773,11.3686816865661,13.6887351986108,8.5220605032252,3.89653456815823,8.0215528957325,5.30290633454707,4.2091439970888,5.1452734115353,4.99556146930133,6.11278933531428,8.38633313478748,8.5668505513613,13.6207450295475,22.094697911147,13.3770414044857,11.4989076185474,10.3111501854785,11.4966148080576,5.15441168223945,8.8556892206826,13.6983128159362,10.4173352617027,14.2567806667256,11.4437090499107,11.6467816150521,9.99445812418767,14.9169668787731,10.6746639599736,4.83856183739358,6.41856469880418,5.50332734754636,7.31420598941885,8.04841031644363,8.95037932904712,11.9274920286907,7.01873074890245,5.79386075843295,11.9292892057665,8.27279279514481,10.9660387910319,4.43458794925128,9.04698292639198,11.5261586437987,1.09288586487763,4.07862887062872,1.9472843619281,1.74129737299267,1.06366368415092,2.38490624305342,4.57595928624102,3.71457501329565,10.5344075904354,0,3.47140501607594,6.78369530308812,4.19499436209906,7.15306909044175,5.43386912995707,8.52775305258785,7.47109151642091,6.02497102976406,7.65375702507379,10.6438094800592,3.1728067481262,8.45625084795498,4.0507097394088,9.82297011124877,6.51135180615892,8.22063807528252,7.66583187329416,7.59412527654503,5.86245580577303,6.58902087180316,11.6334079244498,4.36094052142534,7.9515512271251,13.6760952597746,6.88527740228738,16.0628507619336,7.80270440836386,6.16745360156538,7.47242970107935,3.7000132262574,13.6932855575897,7.67850830797222,8.17309515567294,7.7192288098915,4.03323147135999,5.38939293217732,5.61888138294577,6.84566185853339,4.93180645820944,11.2737118698014,12.4642167163461,12.6405726032024,12.2492502752936,8.72123652913553,12.1924421787403,5.94001428641027,7.91254173691382,6.37112953356618,1.43723628363248,10.6051751791062,10.0094815897571,18.0091675064719,6.58466431321257,10.7270728529657,6.15976041517047,7.94025282120147,17.0420153904419,11.7456563850212,10.5965950579781,21.0063767259082,14.9426167395736,14.6855107826009,13.9587642248692,21.6033705268821,15.200172805147,14.3887251319145,12.7949359112796,9.21382523867228,24.1406522911298,16.1203357164224,11.1909990924922,10.436086070818,12.2735754265876,6.59650569394709,8.66013313520127,10.3373219290759,4.88014560051977,5.49403591581463,7.56962552626885,10.5843434131991,6.25798129319264,3.85944562915731,5.52539685409922,7.42988684851167,5.0531563716871,9.7011576032672,9.27215795429559,7.71235295627142,9.92645754591546,11.7654899809899,12.8126134319992,9.842685495692,9.41863032601661,11.1576675514453,5.16708818237254,2.80483547606892,7.4083322039652,1.47008711385542,15.2106041786197,5.89696330006576,5.90789906681404,10.5951143859516,19.8011386054413,8.7499583252248,10.2067765430022,2.24803506515239,6.13226731710948,8.79590229006031,6.84197441151682,3.11980435583874,8.6598805215164,6.95582429850461,7.98379120803587,6.35212370148725,3.24089858803628,5.89787871927255,7.90204397959275,7.72637545885385,3.69325509131096,2.57404691653161,3.26988557035202,4.68669169933885,12.2626953585167,11.2002326821485,9.49320340650192,10.1721878479887,4.21720947081732,15.2725603747742,7.74826219316389,3.93923419527467,4.32359860250884,3.7872730027914,8.95320309519583,8.40374536228211,7.03304683260282,3.4214489204541,6.47813204030938,4.50514586765876,6.00235508524214,11.5495016875722,8.28324130783232,7.7738582970207,4.52451005152222,0,0.845302752556,12.7650295960738,12.4808924293639,6.43018435655355,4.25547396069835,4.26275486425759,12.582063441917,4.34097284313154,4.93944202068461,6.5147236858747,12.4387182059891,4.75171123760058,9.34462068884717,8.71533458600294,8.19778527692868,3.64871341923571,3.51579964002488,6.32501818449095,7.66799537573064,10.3375742250703,1.42636905040718,11.1481606134036,6.98619496671304,11.2808406841134,9.19098180746924,5.31983052545203,3.66566877261179,4.49200626979119,9.90969034467607,9.10978977003352,5.41302168944387,10.2184921853953,5.74144876487847,2.24702107184155,2.99161459204025,5.38740167466846,11.0422342547226,6.00204625271613,17.0896964930833,11.0224556611328,8.3861624734666,9.46214490203608,7.84847480451178,4.8151375956435,0,6.2083842775503,8.63493278096067,7.19039757312642,10.9473354229784,2.74121620447837,3.77457766191941,11.5790094628817,5.82428342210265,3.52200940751366,2.42502057157008,1.66435439510497,6.65258645325297,7.44323423456331,12.1234958897569,12.3490441550552,13.0701932240815,13.816095724801,6.4341568457443,13.3576259800492,4.93471020168498,4.26148140751505,6.73442679313235,2.59627214591811,4.88083589531829,22.1172792752669,9.82481704486096,8.47145098210246,9.75922809399157,8.74037606432242,7.47409165268718,3.15839729035188,7.47048769912823,4.70609861506113,4.38417673959782,8.2330270536443,4.54933536283586,5.61309227412502,7.77297297967702,0,4.06419656315779,1.00337954770971,9.94017464875649,7.47968408035852,6.49236788694317,13.8133722286939,7.05875717767231,8.71930425395723,7.21632220539353,13.3405141812364,7.10982980369284,13.2775723986598,15.3467669852294,15.5051695258967,7.15066270640173,16.068392984416,10.8271204487177,7.54838223861757,8.90321313411551,10.7512526537934,7.94909812025225,6.96080130788297,8.52266274161009,8.99223560032047,10.7435194984636,8.26417289669956,13.2717220994367,10.6215669898327,3.253918845081,21.4072395844835,8.3644472419272,5.5446044431696,5.32306030317022,3.47973196830029,6.4863476686372,11.4499909393593,7.07100901783368,12.655176988749,7.62520775695299,4.86205803491534,9.84259672478017,3.5002357271853,4.70969184119538,10.4326025398323,7.13796277313742,8.24686816419805,5.25674452090622,4.75530963519025,5.47635993110675,4.38870365180631,4.14312932373184,4.22600587027022,13.1039914951666,4.3835683905651,5.65040583101214,9.37321084028411,5.30751180192976,6.57676327880644,2.31510213706675,3.9353685122798,4.46402829317949,3.717881977197,5.07052084558035,10.0387946542836,7.36867807598409,4.280052617775,10.9975929861885,2.53329162357197,4.61012850143863,3.41525856389144,5.59895552391973,10.0070997234533,6.03272047982209,2.17781969722645,7.43736026136555,6.88808596273968,3.36942951335251,3.99087138183008,12.8645104115897,6.5968189200182,9.94028369285088,6.26611905891579,6.90872148827588,7.81588318863769,12.3209929126616,7.56044012133361,7.9312517629427,8.97322197470774,17.3246373947405,19.8482574944636,7.06052065477731,8.65615277858669,18.7103048006329,5.57991954550878,12.7730797717003,6.12817184423573,13.9704564597763,12.0110117901586,12.3550758369922,7.30350972906215,14.1011906195721,7.51903431270201,14.7283846687395,3.85411380248879,7.06298975168666,14.9046183191614,11.3356763769402,10.753426750796,7.60498766834214,11.8462890615455,11.1371214379163,10.0226222602287,2.46174797895425,15.686429351607,5.99529542396076,14.098700508785,12.9126972881672,4.54175355742871,15.8982283491863,7.13237659375862,20.1736664232553,8.11731248108146,1.78178808499583,8.6004996587785,9.94147647766298,5.20476840718897,14.8040577680465,8.5698014597915,3.80025734630388,5.57894367102995,12.4327761989016,27.2087367682618,10.8404803452284,4.4310529965985,10.2643063928396,15.2776196950456,11.6363763539146,4.09257896181497,8.48333288477629,4.7896618469388,11.1136990144637,8.72399471485697,5.56608588971108,9.98068990005971,7.812832832557,9.88297999957011,4.34999745260876,16.0448762082555,15.5094726678587,9.21911958894952,8.27384095779515,10.4977660817972,10.070249706131,6.20018970069687,3.97968247463846,7.62908681585416,8.5146030147043,4.13766666534966,4.60709334023342,13.1815540857978,21.1924091303477,11.6964392925772,11.0523794171591,15.217217689612,12.3865549285486,9.66961610105872,4.46601623624687,7.87739303256016,3.73124343213044,12.2631957834884,10.3606969220716,10.63754764161,9.92620906715595,9.01887657861602,10.9084031534298,13.4725150234171,11.761306844548,7.17393419395292,24.6481540320313,29.8254980725615,49.5529985009389,15.9241908972561,8.22655349881054,13.4426631885398,16.0121409487536,11.7385741999178,11.5908363951055,4.1114691118213,8.02577647298789,3.74823113160543,8.94028467156763,15.261840276703,14.0812620129774,13.0212852940299,18.1486074072996,13.7732742733721,6.95052375913368,9.01940516486955,16.382734240765,18.6103084358012,18.5355495290279,16.6384446755829,10.7525186795663,11.6689913872215,13.8674673013139,8.15730770175115,10.2892017285097,18.4565517950453,12.7550467816682,13.4149105327861,11.9010287485575,13.4484343438581,12.9742422144071,11.7356709950987,11.296784216512,9.94315259434343,14.2523601632621,5.56400912768371,7.66060631066132,34.4170433613253,23.3262166931963,9.60538476327087,11.5889573557636,14.4090417154106,12.255415789753,15.4435498075768,13.9733154048505,17.519607514726,14.6130301462413,17.1239299652754,16.1088383320993,9.89382711072321,13.8696283152729,6.00420288709789,4.38097212454378,11.4971929260275,12.0334323597588,6.04640914842423,9.7748840445289,14.4371067127361,7.17873024576814,16.5733570414163,15.02291168478,18.3000595102335,24.7235178751153,7.92659743793288,17.4743924291181,18.4352646598903,18.8732315692871,20.0188525246929,18.5043665247728,11.4308998288809,7.15706720828373,4.494712401682,6.59087908706579,7.42712957625062,5.81616473240859,8.09906009585402,6.1904156364636,6.56095211906666,19.7906465683567,11.8996618021789,10.2286446863246,11.5104366806153,10.0400910026393,15.5451309828751,9.29103924285377,17.8764831998667,8.64513028026149,9.77399283156683,7.77799342081141,11.7571449639387,5.98650957812437,8.04506703343522,13.1198776774775,12.577642158734,9.67244742275344,6.62534444561107,4.13705460356962,5.02483886622222,33.5330202253286,13.3914854240168,7.79548111744171,19.1789252221592,11.5986935497215,13.8926486107346,9.68296996299927,11.692089444566,14.6818489287142,4.35214242695579,3.2589686222951,3.982492497925,1.96723578425883,33.4525225012999,6.2024772597689,7.80968095372564,5.63359188179249,4.58727356552057,5.21366542223206,4.09836259413131,13.6965148586869,10.2483934528927,14.7099644015398,15.9860586785182,4.9405822136616,14.5183820800133,10.1444720027578,3.88062487505873,4.67426619694449,6.10286447652875,4.54567212660214,7.29546915082468,10.6777346591584,7.32288218870155,6.65416064558252,4.35224161631785,9.1670192993573,6.05327715222069,4.94783423379965,5.12367757691656,2.48823724704513,5.3168342911599,7.30443086536427,6.31081957788317,10.6625459407263,11.7992512629352,4.9099137984691,6.12240175142184,6.49647263829891,8.36001366267094,10.0006941165788,9.6150797451182,7.0717392640843,5.04739592914604,18.2988838886938,7.29101410674747,5.21988583930423,16.0961207113713,7.40871917836269,9.7894681802587,12.5362188757041,11.7344549921169,8.11350983441216,19.259116908101,10.0315299900876,8.61606447330671,11.0183852992817,8.63575854327997,3.95017943030597,5.94511275452442,1.16916185303633,1.72724292407372,0.981392365535065,4.58653788384978,7.37318726261158,8.02986068762783,7.19954625077748,11.7360902663555,6.02752428812855,10.215287164203,7.18013205982179,8.25289095544722,4.97661808026378,24.2999305476938,644.253248095174,21.3881680924019,31.670795075684,6.78930119816101,17.431143448338,13.1371910114542,10.0556085235184,9.54013051960256,21.6081181303434,26.4188346934205,5.99549104274163,14.3935374356004,6.42292250964595,4.25089728976755,4.46974805360024,6.35860729146341,16.13258855819,6.43162447917226,5.16722066021924,1.42769420259154,22.7702706922379,16.7517007153791,7.70400113791052,11.7836179473345,11.0600807685478,12.4264786690818,5.96748666348824,13.5378591028663,12.9091243970253,15.6302802246619,12.3096146406269,8.02482395799474,18.9255790357818,8.7798860003913,9.37293718336617,6.40729069153671,6.34158101939068,12.580420607419,4.38606213485746,12.9014906381217,32.5361802065298,10.9875687770052,6.96412386641773,11.0973628332212,12.1393120847326,20.2619350302655,4.70122561861986,6.56833729067942,8.74588848130834,4.62194184242456,7.3665506390391,20.4475344729265,21.5788919670614,10.3610882562679,5.81327682689207,21.5809565751618,10.9579046461139,39.2988216017891,8.5995303819669,8.86309147790539,17.8555381257981,13.3677639173344,6.7804726198006,2.40513409419076,6.42370108905414,6.828739083758,2.76503864725637,12.0463660469678,9.46656005844523,10.4812487853764,17.782256108019,11.4553434272025,14.8899065118874,20.0663177185261,14.541206133713,14.0354834069797,10.850695323422,4.53200186031526,4.61982630853112,8.11870101936739,13.1141968125968,7.25212336732527,20.2929790664596,9.39468717142792,15.8124514854544,13.5226835596878,24.4559806578011,16.9011406256399,12.0207758277177,21.1642783362685,6.86415300910935,8.48435569565853,4.90771167787363,2.67341760294377,11.4117046447518,7.30686593157613,6.29692250465019,9.15302009224796,7.39564553844474,24.2833356503694,5.99921281916676,21.1034794392513,5.11235471772562,7.33966853447265,4.15684791139209,6.46863404992057,5.16735325450952,19.1994303749766,16.9288588964928,3.34795516350076,8.31916131536553,5.62414530760926,8.9578161632906,10.8172916244059,7.85530706270909,12.5446260582638,0.26721740526556,0,7.77193371806363,9.69967337193464,9.9146728157786,4.1458471972939,4.55105181792339,7.67642334843531,13.3316081619695,14.5970936229374,14.6496325738225,8.29775783096539,15.6572009364286,15.3609063608247,9.36182015956934,9.92476573147315,8.68841483888179,9.1087200848699,7.65118820055831,16.8504766024717,9.17855174548353,1.9307228228694,21.0190972929413,11.7320471201727,19.9253554018072,15.4620547759981,6.65756774185513,6.44076139491284,7.05250683067112 | |||
|short_description=p1@LCLAT1 | |||
}} |
Latest revision as of 22:03, 16 September 2015
Short description: | p1@LCLAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCLAT1_5end |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | 0bp_to_ENST00000309052, ENST00000319406, ENST00000359433, ENST00000379509, ENST00000444270, ENST00000465200, ENST00000465538, ENST00000466477, ENST00000488144, ENST00000491680, NM_182551, uc002rnj.2, uc010ymp.1_5end |
EntrezGene: | LCLAT1 |
HGNC: | 26756 |
UniProt: | Q6UWP7A6H8Z7C9JMW2C9JA02C9JXY8C9J5S5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
digestive system | 1.46e-11 | 145 |
digestive tract | 1.46e-11 | 145 |
primitive gut | 1.46e-11 | 145 |
endo-epithelium | 6.35e-10 | 82 |
endoderm-derived structure | 7.75e-10 | 160 |
endoderm | 7.75e-10 | 160 |
presumptive endoderm | 7.75e-10 | 160 |
subdivision of digestive tract | 4.72e-09 | 118 |
endocrine system | 3.83e-07 | 45 |
gut epithelium | 4.83e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 7.51e-30 | 239 |
cancer | 2.16e-29 | 235 |
cell type cancer | 1.82e-27 | 143 |
carcinoma | 3.19e-23 | 106 |
organ system cancer | 1.02e-13 | 137 |
disease of anatomical entity | 2.15e-09 | 39 |
respiratory system cancer | 7.93e-07 | 16 |