FFCP PHASE1:Hg19::chr2:131594446..131594472,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=50649 | |EntrezGene=50649 | ||
Line 8: | Line 8: | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-16bp_to_ENST00000526381_5end | |association_with_transcript=-16bp_to_ENST00000526381_5end | ||
|cluster_id=chr2:131594446..131594472,+ | |||
|coexpression_cluster_id=C4126 | |coexpression_cluster_id=C4126 | ||
|description=CAGE_peak_3_at_ARHGEF4_5end | |description=CAGE_peak_3_at_ARHGEF4_5end |
Latest revision as of 23:02, 16 September 2015
Short description: | p3@ARHGEF4 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGEF4_5end |
Coexpression cluster: | C4126_salivary_astrocytoma_spinal_hippocampus_medulla_thalamus_amygdala |
Association with transcript: | -16bp_to_ENST00000526381_5end |
EntrezGene: | ARHGEF4 |
HGNC: | 684 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p3@ARHGEF4 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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endo-epithelial cell | 1.42e-15 | 42 |
epithelial cell | 3.41e-14 | 253 |
endodermal cell | 6.62e-12 | 58 |
epithelial cell of alimentary canal | 3.77e-10 | 20 |
respiratory epithelial cell | 1.21e-08 | 13 |
Showing 1 to 5 of 5 entries
Ontology term | p-value | n |
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neural tube | 2.61e-36 | 56 |
neural rod | 2.61e-36 | 56 |
future spinal cord | 2.61e-36 | 56 |
neural keel | 2.61e-36 | 56 |
regional part of nervous system | 8.85e-33 | 53 |
regional part of brain | 8.85e-33 | 53 |
central nervous system | 3.04e-32 | 81 |
brain | 7.22e-31 | 68 |
future brain | 7.22e-31 | 68 |
nervous system | 3.47e-30 | 89 |
Showing 1 to 10 of 54 entries
Ontology term | p-value | n |
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carcinoma | 9.00e-11 | 106 |
squamous cell carcinoma | 2.11e-08 | 14 |
cell type cancer | 3.29e-07 | 143 |
Showing 1 to 3 of 3 entries