FFCP PHASE1:Hg19::chr13:31038109..31038145,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3146 | |EntrezGene=3146 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4983 | |HGNC=4983 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T7C4 | |UniProt=Q5T7C4 | ||
|association_with_transcript=238bp_to_ENST00000399489,uc001usv.2_5end | |association_with_transcript=238bp_to_ENST00000399489,uc001usv.2_5end | ||
|cluster_id=chr13:31038109..31038145,- | |||
|coexpression_cluster_id=C29 | |||
|description=CAGE_peak_18_at_HMGB1_5end | |description=CAGE_peak_18_at_HMGB1_5end | ||
|id=chr13:31038109..31038145,- | |id=chr13:31038109..31038145,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000136;1.24e-18;13!CL:0002615;9.36e-10;3!CL:0002591;6.18e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.19e-21,15;CL:0002615,7.85e-10,3;CL:0002591,9.29e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0005754;6.18e-08;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.17e-12!115 | |ontology_enrichment_uberon=UBERON:0007023!1.17e-12!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000998;6.18e-08;1!UBERON:0002146;6.18e-08;1!UBERON:0001389;6.18e-08;1!UBERON:0007195;6.18e-08;1!UBERON:0000026;6.18e-08;1!UBERON:0008784;6.18e-08;1!UBERON:0006058;6.18e-08;1!UBERON:0006868;6.18e-08;1!UBERON:0003663;6.18e-08;1!UBERON:0004256;6.18e-08;1!UBERON:0004708;6.18e-08;1!UBERON:0002101;6.18e-08;1!UBERON:0004709;6.18e-08;1!UBERON:0005623;6.18e-08;1!UBERON:0002529;6.18e-08;1!UBERON:0010538;6.18e-08;1!UBERON:0003661;6.18e-08;1!UBERON:0010890;6.18e-08;1!UBERON:0002471;6.18e-08;1!UBERON:0001383;6.18e-08;1!UBERON:0010758;6.18e-08;1!UBERON:0010707;6.18e-08;1!UBERON:0000978;6.18e-08;1!UBERON:0002103;6.18e-08;1!UBERON:0001665;6.18e-08;1!UBERON:0003823;6.18e-08;1!UBERON:0000154;6.18e-08;1!UBERON:0010709;6.18e-08;1!UBERON:0002346;1.59e-07;4!UBERON:0000923;1.59e-07;4!UBERON:0010316;1.59e-07;4!UBERON:0005291;1.59e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005418,6.63e-08,1;UBERON:0001389,6.63e-08,1;UBERON:0000026,6.63e-08,1;UBERON:0008784,6.63e-08,1;UBERON:0006058,6.63e-08,1;UBERON:0003663,6.63e-08,1;UBERON:0004256,6.63e-08,1;UBERON:0004708,6.63e-08,1;UBERON:0002101,6.63e-08,1;UBERON:0004709,6.63e-08,1;UBERON:0002529,6.63e-08,1;UBERON:0010538,6.63e-08,1;UBERON:0003661,6.63e-08,1;UBERON:0010890,6.63e-08,1;UBERON:0002471,6.63e-08,1;UBERON:0001383,6.63e-08,1;UBERON:0004357,6.63e-08,1;UBERON:0004347,6.63e-08,1;UBERON:0005420,6.63e-08,1;UBERON:0005732,6.63e-08,1;UBERON:0010758,6.63e-08,1;UBERON:0010707,6.63e-08,1;UBERON:0000978,6.63e-08,1;UBERON:0002103,6.63e-08,1;UBERON:0001665,6.63e-08,1;UBERON:0003823,6.63e-08,1;UBERON:0000154,6.63e-08,1;UBERON:0010709,6.63e-08,1;UBERON:0005733,6.63e-08,1;UBERON:0005730,6.63e-08,1;UBERON:0000998,7.10e-08,1;UBERON:0006868,7.10e-08,1;UBERON:0002146,8.69e-08,1;UBERON:0005623,8.69e-08,1;UBERON:0007195,1.06e-07,1 | |||
|phase1_expression=0.363356758541113,0.428201047781966,1.40954404095971,0,1.34088328328186,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0.313454721478088,0,0,0.251085279189606,0,0.0821005894499457,0,0.393364276848904,0,0.154816123316076,0,0,0,0.154934401160603,0.142169232487422,0.587200878669695,0,0.200544447470142,0,0,0,0,0,0,0,0,0.822335776043652,0,0,0,0,0,0,0,0,0.545812300115692,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0.764546456250458,1.32171328579026,0.560508562981536,0,0.196709770113833,0,0.616804496998528,0,0,0.473447805734733,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0.289803085735052,0,0,0,0.339928028092699,0,0,0.759059076058509,0,0,0.950452044448374,0,0,0,0,0,0,0.267440195783507,0,4.87613732627923,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0.392937226493138,0,0,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0.300476117813194,0,0.179389635688862,0.213557388818567,0,0.300091096084402,0.103052529238439,0.257640540045629,0,0.337552664482532,0.194874010322397,0,0.184099797284599,0.323292113637624,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0.286804595389004,0.243947412259191,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,3.80265104465493,1.96565443335525,1.18157981336281,0,0,0.343135620597051,0,0,0.100528972411631,0,0,0,0,0,0.352226082707465,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0.414656231081544,0.432359860250884,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.299918973546171,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0.197030760201927,0,0.385029108839245,0.254094624222463,0,0,0.167516265334349,0.637938751653163,0.749007023947182,0,0,0,0,0.271265023699736,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0.460385919864187,0.280660094433074,0.128139149255701,0,0.160853921143607,0,0,0.177561725313127,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,15.8683157937492,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0.349934720244983,0,0,0,15.9103023312757,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0,0,0,0.423347165447766,0,0.280797178113459,0.456469358066384,0.156679895773023,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0.879049075631364,0,0,0,0,0,0,0,0.281338832821026,0,0,0.211125408127993,0.19924798825107,0.276283915531148,0.503865495708552,0.102268682502155,0.246169610922139,0,0,0,0,0.394573622547734,0,1.11136990144637,0.969332746095218,0.185536196323703,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0.295547618953547,0.219385397153973,0,0.278847488557207,0.769502585037971,0,0,0,0.217294743844016,0,0,0,0,0.156980256395025,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0,0,0,0.353830258013357,0,0,0.123563938946503,0.730953646538188,0,0,0.702793337176017,0,0.19566461893209,0,0.394584402849391,1.20990716048664,0.30607276163049,0.189559738885464,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0.698906672968121,0,0,0.0730893170861856,0,0,0.0882561266915003,0,0,0,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0.209205692624666,0.101998217636322,0,0,0.273810757783986,0,0,0.262887354279314,0.558564802544508,1.14580212005842,0,0.199679000498991,0,0.223171457441873,0.0671834724867263,0.720599767084807,0,0,0,0,0,0,0,0.136203406111576,0.482259445395058,0.137539436597234,0,0.899895566206002,0,0.0607495566580247,0,0.157611414598396,0.104909176269996,0.105600336519406,0,0.191915197319445,0.714695326373367,0,0.25426853765475,0,0,0,0,0.328370082997356,0.170388021785422,0,1.90517903781507,0,0.258565912723101,0.13223260174269,0,0,0.106787412567695,0,0.414239055347196,0,1.58089305518355,0.121792598380896,0.638341257770182,17.4085697078232,9.2755260788399,11.6411319170115,23.9347020418157,0.157054096250234,0,0.122026264901963,0,0.573409195690071,0.110929051536852,0.0620964029413835,0.138348634936231,0,0,0.285465333544967,0,0,0,0,0,0,0.189403005275089,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,1.37358282073117,0.673498977531838,0,0.192619830407303,0,0.260994291965212,0,0,0,0,0,0,0,0,0.337884881306145,0,0,0,0.276516872303462,0,0.265729680626726,0.163565394255844,0,0,0,0,0,0,0,0.184105950251841,0,0,0.127894371303652,0,0.157265941855896,0.109209638192014,0,1.70059936081346,1.11542187833102,0.558644917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| ||
|short_description=p18@HMGB1 | |short_description=p18@HMGB1 | ||
}} | }} |
Latest revision as of 02:03, 17 September 2015
Short description: | p18@HMGB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_HMGB1_5end |
Coexpression cluster: | C29_mature_adipose_Adipocyte_breast_Lymphatic_vein_heart |
Association with transcript: | 238bp_to_ENST00000399489, uc001usv.2_5end |
EntrezGene: | HMGB1 |
HGNC: | 4983 |
UniProt: | Q5T7C4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.19e-21 | 15 |
adipocyte of omentum tissue | 7.85e-10 | 3 |
smooth muscle cell of the pulmonary artery | 9.29e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
hindlimb bud | 6.63e-08 | 1 |
soleus muscle | 6.63e-08 | 1 |
appendage | 6.63e-08 | 1 |
lower limb segment | 6.63e-08 | 1 |
multi-limb segment region | 6.63e-08 | 1 |
hindlimb muscle | 6.63e-08 | 1 |
hindlimb zeugopod muscle | 6.63e-08 | 1 |
paired limb/fin | 6.63e-08 | 1 |
limb | 6.63e-08 | 1 |
pelvic appendage | 6.63e-08 | 1 |
limb segment | 6.63e-08 | 1 |
paired limb/fin segment | 6.63e-08 | 1 |
limb muscle | 6.63e-08 | 1 |
pelvic complex muscle | 6.63e-08 | 1 |
zeugopod | 6.63e-08 | 1 |
muscle of leg | 6.63e-08 | 1 |
paired limb/fin bud | 6.63e-08 | 1 |
limb bud | 6.63e-08 | 1 |
pelvic appendage bud | 6.63e-08 | 1 |
limb/fin field | 6.63e-08 | 1 |
subdivision of organism along appendicular axis | 6.63e-08 | 1 |
appendage girdle complex | 6.63e-08 | 1 |
leg | 6.63e-08 | 1 |
hindlimb | 6.63e-08 | 1 |
triceps surae | 6.63e-08 | 1 |
hindlimb zeugopod | 6.63e-08 | 1 |
posterior region of body | 6.63e-08 | 1 |
pelvic complex | 6.63e-08 | 1 |
limb field | 6.63e-08 | 1 |
hindlimb/pelvic fin field | 6.63e-08 | 1 |
seminal vesicle | 7.10e-08 | 1 |
seminal fluid secreting gland | 7.10e-08 | 1 |
pulmonary valve | 8.69e-08 | 1 |
semi-lunar valve | 8.69e-08 | 1 |
stroma of bone marrow | 1.06e-07 | 1 |