FFCP PHASE1:Hg19::chr5:174905532..174905604,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=94081 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16085 | |||
|TSSclassifier=strong | |||
|UniProt=D6RFI0,D6RAE9 | |||
|association_with_transcript=0bp_to_ENST00000502393,ENST00000506963,ENST00000507395,ENST00000507823,ENST00000508290,ENST00000513725,ENST00000515791,uc003mdb.1_5end | |||
|cluster_id=chr5:174905532..174905604,+ | |||
|description=CAGE_peak_1_at_SFXN1_5end | |||
|id=chr5:174905532..174905604,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.11e-21!235;DOID:14566!2.87e-20!239;DOID:0050686!1.34e-11!137;DOID:0050687!1.78e-11!143;DOID:305!3.59e-10!106;DOID:2531!7.77e-08!51;DOID:0060083!7.77e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.10e-21,235;DOID:14566,2.86e-20,239;DOID:0050686,1.34e-11,137;DOID:0050687,1.78e-11,143;DOID:305,3.59e-10,106;DOID:2531,7.73e-08,51;DOID:0060083,7.73e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0000481!1.02e-09!347;UBERON:0001017!1.88e-09!82;UBERON:0000955!2.78e-09!69;UBERON:0006238!2.78e-09!69;UBERON:0005743!7.13e-09!86;UBERON:0000073!9.54e-09!94;UBERON:0001016!9.54e-09!94;UBERON:0000119!1.69e-08!312;UBERON:0001049!2.90e-08!57;UBERON:0005068!2.90e-08!57;UBERON:0006241!2.90e-08!57;UBERON:0007135!2.90e-08!57;UBERON:0002616!4.15e-08!59;UBERON:0000025!5.93e-08!194;UBERON:0000483!6.37e-08!309;UBERON:0001869!1.27e-07!32;UBERON:0002780!1.44e-07!41;UBERON:0001890!1.44e-07!41;UBERON:0006240!1.44e-07!41;UBERON:0002020!1.59e-07!34;UBERON:0003528!1.59e-07!34;UBERON:0003056!3.86e-07!61;UBERON:0003080!3.87e-07!42;UBERON:0003075!4.36e-07!86;UBERON:0007284!4.36e-07!86;UBERON:0000477!6.75e-07!286;UBERON:0002346!7.02e-07!90;UBERON:0001893!7.70e-07!34;UBERON:0002791!9.94e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.27e-07;32!UBERON:0003528;8.07e-07;34!UBERON:0002020;8.07e-07;34!UBERON:0002791;8.24e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,1.26e-11,223;UBERON:0001017,8.50e-10,81;UBERON:0000955,1.16e-09,68;UBERON:0006238,1.16e-09,68;UBERON:0001016,1.36e-09,89;UBERON:0001049,1.17e-08,56;UBERON:0005068,1.17e-08,56;UBERON:0006241,1.17e-08,56;UBERON:0007135,1.17e-08,56;UBERON:0000073,1.28e-08,53;UBERON:0002616,1.28e-08,53;UBERON:0000025,2.66e-08,192;UBERON:0000119,4.14e-08,309;UBERON:0001869,1.27e-07,32;UBERON:0002780,1.44e-07,41;UBERON:0001890,1.44e-07,41;UBERON:0003080,1.44e-07,41;UBERON:0006240,1.44e-07,41;UBERON:0000483,1.51e-07,306;UBERON:0003528,1.59e-07,34;UBERON:0002020,1.59e-07,34;UBERON:0003056,2.84e-07,61;UBERON:0002791,3.27e-07,32;UBERON:0003075,4.62e-07,82;UBERON:0007284,4.62e-07,82;UBERON:0010314,7.32e-07,132;UBERON:0002346,7.60e-07,86;UBERON:0001893,7.70e-07,34 | |||
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| |||
|short_description=p1@SFXN1 | |||
}} |
Latest revision as of 03:18, 17 September 2015
Short description: | p1@SFXN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SFXN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000502393, ENST00000506963, ENST00000507395, ENST00000507823, ENST00000508290, ENST00000513725, ENST00000515791, uc003mdb.1_5end |
EntrezGene: | SFXN1 |
HGNC: | 16085 |
UniProt: | D6RFI0D6RAE9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 1.26e-11 | 223 |
central nervous system | 8.50e-10 | 81 |
brain | 1.16e-09 | 68 |
future brain | 1.16e-09 | 68 |
nervous system | 1.36e-09 | 89 |
neural tube | 1.17e-08 | 56 |
neural rod | 1.17e-08 | 56 |
future spinal cord | 1.17e-08 | 56 |
neural keel | 1.17e-08 | 56 |
regional part of nervous system | 1.28e-08 | 53 |
regional part of brain | 1.28e-08 | 53 |
tube | 2.66e-08 | 192 |
cell layer | 4.14e-08 | 309 |
cerebral hemisphere | 1.27e-07 | 32 |
regional part of forebrain | 1.44e-07 | 41 |
forebrain | 1.44e-07 | 41 |
anterior neural tube | 1.44e-07 | 41 |
future forebrain | 1.44e-07 | 41 |
epithelium | 1.51e-07 | 306 |
brain grey matter | 1.59e-07 | 34 |
gray matter | 1.59e-07 | 34 |
pre-chordal neural plate | 2.84e-07 | 61 |
regional part of telencephalon | 3.27e-07 | 32 |
neural plate | 4.62e-07 | 82 |
presumptive neural plate | 4.62e-07 | 82 |
structure with developmental contribution from neural crest | 7.32e-07 | 132 |
neurectoderm | 7.60e-07 | 86 |
telencephalon | 7.70e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.10e-21 | 235 |
disease of cellular proliferation | 2.86e-20 | 239 |
organ system cancer | 1.34e-11 | 137 |
cell type cancer | 1.78e-11 | 143 |
carcinoma | 3.59e-10 | 106 |
hematologic cancer | 7.73e-08 | 51 |
immune system cancer | 7.73e-08 | 51 |