FFCP PHASE1:Hg19::chr15:32976620..32976643,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6447 | |EntrezGene=6447 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10816 | |HGNC=10816 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000475752_5end | |association_with_transcript=0bp_to_ENST00000475752_5end | ||
|cluster_id=chr15:32976620..32976643,+ | |||
|coexpression_cluster_id=C2329 | |||
|description=CAGE_peak_2_at_SCG5_5end | |description=CAGE_peak_2_at_SCG5_5end | ||
|id=chr15:32976620..32976643,+ | |id=chr15:32976620..32976643,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.60e-21!180;CL:0002371!1.01e-15!591;CL:0000548!1.99e-14!679;CL:0000004!1.99e-14!679;CL:0000255!1.99e-14!679;CL:0000144!2.17e-14!625;CL:0000012!5.64e-14!682;CL:0000723!1.17e-13!436;CL:0000057!4.82e-13!75;CL:0000048!8.95e-13!430;CL:0000034!1.09e-12!444;CL:0000359!1.06e-10!32;CL:0002620!1.16e-10!23;CL:0000680!5.03e-10!57;CL:0000056!5.03e-10!57;CL:0000355!5.03e-10!57;CL:0000003!2.09e-09!722;CL:0002539!5.19e-09!10;CL:0000192!6.11e-09!42;CL:0000514!6.11e-09!42;CL:0000187!7.05e-09!54;CL:0002334!6.05e-08!12;CL:0000393!2.89e-07!60;CL:0000211!2.89e-07!60;CL:0000183!3.73e-07!59;CL:0000220!7.94e-07!246 | |ontology_enrichment_celltype=CL:0000055!1.60e-21!180;CL:0002371!1.01e-15!591;CL:0000548!1.99e-14!679;CL:0000004!1.99e-14!679;CL:0000255!1.99e-14!679;CL:0000144!2.17e-14!625;CL:0000012!5.64e-14!682;CL:0000723!1.17e-13!436;CL:0000057!4.82e-13!75;CL:0000048!8.95e-13!430;CL:0000034!1.09e-12!444;CL:0000359!1.06e-10!32;CL:0002620!1.16e-10!23;CL:0000680!5.03e-10!57;CL:0000056!5.03e-10!57;CL:0000355!5.03e-10!57;CL:0000003!2.09e-09!722;CL:0002539!5.19e-09!10;CL:0000192!6.11e-09!42;CL:0000514!6.11e-09!42;CL:0000187!7.05e-09!54;CL:0002334!6.05e-08!12;CL:0000393!2.89e-07!60;CL:0000211!2.89e-07!60;CL:0000183!3.73e-07!59;CL:0000220!7.94e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.06e-10;32!CL:0002334;1.41e-10;12!CL:0002539;1.44e-10;10!CL:0002620;6.45e-10;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,1.39e-13,433;CL:0000057,6.96e-13,76;CL:0000048,9.23e-13,427;CL:0000034,1.07e-12,441;CL:0000359,2.80e-11,32;CL:0002334,9.44e-11,12;CL:0002539,1.51e-10,10;CL:0002620,5.67e-10,23;CL:0000134,1.65e-08,354;CL:0002320,7.19e-08,361;CL:0000219,2.34e-07,386;CL:0000192,7.82e-07,43;CL:0000514,7.82e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.66e-09!14 | |ontology_enrichment_disease=DOID:2394!3.66e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;2.22e-11;14!DOID:17;6.89e-07;5!DOID:450;6.89e-07;5!DOID:66;6.89e-07;5!DOID:423;6.89e-07;5!DOID:0080000;6.89e-07;5!DOID:11722;6.89e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.59e-11,14;DOID:17,6.58e-07,5;DOID:450,6.58e-07,5;DOID:66,6.58e-07,5;DOID:423,6.58e-07,5;DOID:0080000,6.58e-07,5;DOID:11722,6.58e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000486!9.69e-15!82;UBERON:0002199!1.09e-13!45;UBERON:0002416!1.09e-13!45;UBERON:0002097!1.38e-12!40;UBERON:0000914!2.97e-11!83;UBERON:0002329!2.97e-11!83;UBERON:0003077!2.97e-11!83;UBERON:0003059!2.97e-11!83;UBERON:0007282!2.97e-11!83;UBERON:0009618!2.97e-11!83;UBERON:0007285!2.97e-11!83;UBERON:0004290!4.86e-11!70;UBERON:0002204!1.11e-10!167;UBERON:0001637!2.33e-09!42;UBERON:0003509!2.33e-09!42;UBERON:0004572!2.33e-09!42;UBERON:0001134!3.49e-09!61;UBERON:0002036!3.49e-09!61;UBERON:0003082!3.49e-09!61;UBERON:0004573!3.84e-09!33;UBERON:0004571!3.84e-09!33;UBERON:0004237!5.19e-09!10;UBERON:0004695!5.19e-09!10;UBERON:0002111!5.19e-09!10;UBERON:0004178!5.19e-09!10;UBERON:0002385!1.76e-08!63;UBERON:0001015!1.76e-08!63;UBERON:0000383!1.76e-08!63;UBERON:0003102!2.85e-08!95;UBERON:0001135!2.80e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;7.53e-12;41!UBERON:0004237;1.44e-10;10!UBERON:0004695;1.44e-10;10!UBERON:0002111;1.44e-10;10!UBERON:0004178;1.44e-10;10!UBERON:0002199;7.58e-10;46!UBERON:0002416;7.58e-10;46!UBERON:0004573;2.25e-08;33!UBERON:0004571;2.25e-08;33!UBERON:0003102;1.01e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.87e-15,41;UBERON:0002199,3.97e-15,46;UBERON:0002416,3.97e-15,46;UBERON:0004237,1.51e-10,10;UBERON:0004695,1.51e-10,10;UBERON:0002111,1.51e-10,10;UBERON:0004178,1.51e-10,10;UBERON:0001637,6.52e-10,42;UBERON:0003509,6.52e-10,42;UBERON:0004572,6.52e-10,42;UBERON:0004573,2.00e-09,33;UBERON:0004571,2.00e-09,33;UBERON:0002384,4.03e-09,371;UBERON:0002204,2.28e-08,167;UBERON:0000486,2.53e-08,83;UBERON:0003102,1.39e-07,99 | |||
|phase1_expression=5.26867299884614,3.42560838225573,0.986680828671798,1.0007329835313,0,6.10636966870258,0,0.631719873426831,0.522371256399677,0,0,0,0,0.123766352960047,0,60.5092631806598,60.8721473304217,53.3126365982782,63.4312638427659,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0.6024118375565,2.21852406100073,0,0,0,0,0,0,0,0,0,0,1.13362783106643,0.727752183563449,0.464858073811369,1.23350366406548,4.64559556342655,2.3015391385772,3.58624989140741,3.31075121844019,0,0.645484683583826,2.70852973188684,0.752969358170419,2.18324920046277,2.9214052977861,0.918251677112708,2.88836124368484,0,0,0.199463657621632,0.426224750532694,0.290209238628584,1.13477044938228,1.24564449799115,3.76872997885115,4.17186334736161,6.08128765174327,0,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,3.00802746381534,0.144846518960824,26.2444362526863,2.43317435151318,0.0945348171640679,0,0.175669571386252,0,0,0,1.29818957461873,0.870648686496336,1.86141144726411,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0.33472061276467,0,0.760272105718513,0.488124115096339,0,0,0,0,0,0,0,0.366403487860815,0,0,0,3.97577561356255,2.65924074495618,32.3078401184254,0.573673241497627,0.709336764396714,2.24271040056923,10.6748995729705,23.186749551213,0,0.808264032418128,0,0,0,0,0.624320153660641,0,0.298897361103602,0.23486899728753,0.647491777472526,0.561803226808994,0.408308342509787,0,0.103325781175765,0,0.989067717114227,0,0,0,0,0,0,5.82326812018137,0.600952235626387,2.26864366320042,18.4771324759528,10.8914268297469,29.6704661623387,10.8032794590385,16.2822996196733,8.50213782150576,13.0281799432113,4.55696097051419,5.55390929418832,5.55354303337052,10.769838141149,1.61646056818812,6.74518225781567,11.2842350014957,4.91725717700414,27.0565194428616,18.8194823207676,6.88331028933609,0,0,0,0.10366105501537,0,0,6.25798129319264,1.92972281457866,5.52539685409922,4.64367928031979,2.88751792667834,0.118306800039844,0,0,0,0.217879444092406,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,5.92651541206578,1.1240175325762,11.4603028549259,0.925884451585296,0,0,0,0,0.234817388471643,0.577465791044295,0,0,0,0,4.67812311566055,124.256264788935,45.4811356603508,12.185398418281,6.04735661515894,17.8636622525407,1.34337784054272,0,0,0,0,0,0,0,0.190493682876507,0,0,0,0.205654985406647,0,0,0,0,0.4400297149257,9.82465039759111,0,20.287266061344,0.797814349754612,0,0,0,0,0,0,0,21.8243243476802,0,0,2.1100756394171,24.4029368408082,0.399891964728228,0,1.50677127429638,4.21667878966063,0.479249710983165,0,1.42636905040718,7.6734092533817,0.61642896765115,4.65558504423729,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0,0,0,0.415941723061614,0.178428988797162,0.157702415033935,0.117141414992713,0,0,2.0694614258501,0.664225598535437,0.368738337083406,0.434418072340414,0,0,0,0,0,0,0,0,20.5929480489585,4.60385919864187,7.01650236082684,2.94720043288112,2.55853624533352,2.73451665944133,1.48418066444991,13.1078239732257,13.3171293984845,1.8067974323038,3.11552657510173,3.48631135379878,0,1.00253235151642,0.460404944679482,0.229628896329213,0.182091168006717,0,0,0.308061348417659,0,0,0.633309773357254,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.3764972158775,5.20048196829217,0,0.193341436584244,0.154048617114644,0,2.34322173223702,0.537101224341368,0,0.681813019328807,0.267096106940212,10.0823798370197,7.11103249250893,9.44334072459923,2.2254711788221,50.2033193241069,28.9627359084189,16.0318572136938,0.924100740528266,5.32306030317022,19.1385258256516,14.2699648710018,2.86249773483982,0.372158369359667,0,0,0,0,0,8.63443504219153,0.359744915166629,0.54907405947211,0.471249609382746,3.23491970517306,1.58510321173008,4.63384301862879,0,2.19342140668156,0,0.272999822815972,0,0,1.65409603063837,0.66343897524122,1.31535265576129,0.578775534266688,0,21.3055895810839,4.02770547529675,0.563391205064483,0.286822704408103,0,15.693526265175,0,0.211107635297664,2.96365403663912,0,0,2.11688647996127,0,3.26672954583968,0,1.29151611801369,5.05414427002877,0.443430153536676,8.27004240745054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,1.18504244461122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,0,0,0,0,0.281338832821026,22.8182845296957,0.329607748453519,0,0,0,0,5.4202401726142,0,9.64222721751603,4.49341755736634,0,0,0.0986434056369336,0,66.6821940867821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,124.310782929078,0,0,0,0,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.416024019039416,0,0,0.522355239482415,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,38.6458227503838,34.1789132129142,0.0633107959558787,0,87.4532728944233,0,0,0,0,0,1.29649318189335,0,0,0.543616824294456,0.627617077873999,3.97793048781655,11.8469741859623,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,33.5078891694435,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425246896606173,0,0,0,0.422401346077626,0,0,0.7146953263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| ||
|short_description=p2@SCG5 | |short_description=p2@SCG5 | ||
}} | }} |
Latest revision as of 04:22, 17 September 2015
Short description: | p2@SCG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCG5_5end |
Coexpression cluster: | C2329_cholangiocellular_gall_pagetoid_mesenchymal_bone_Macrophage_Aortic |
Association with transcript: | 0bp_to_ENST00000475752_5end |
EntrezGene: | SCG5 |
HGNC: | 10816 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 1.39e-13 | 433 |
fibroblast | 6.96e-13 | 76 |
multi fate stem cell | 9.23e-13 | 427 |
stem cell | 1.07e-12 | 441 |
vascular associated smooth muscle cell | 2.80e-11 | 32 |
preadipocyte | 9.44e-11 | 12 |
aortic smooth muscle cell | 1.51e-10 | 10 |
skin fibroblast | 5.67e-10 | 23 |
mesenchymal cell | 1.65e-08 | 354 |
connective tissue cell | 7.19e-08 | 361 |
motile cell | 2.34e-07 | 386 |
smooth muscle cell | 7.82e-07 | 43 |
smooth muscle myoblast | 7.82e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.87e-15 | 41 |
integument | 3.97e-15 | 46 |
integumental system | 3.97e-15 | 46 |
blood vessel smooth muscle | 1.51e-10 | 10 |
arterial system smooth muscle | 1.51e-10 | 10 |
artery smooth muscle tissue | 1.51e-10 | 10 |
aorta smooth muscle tissue | 1.51e-10 | 10 |
artery | 6.52e-10 | 42 |
arterial blood vessel | 6.52e-10 | 42 |
arterial system | 6.52e-10 | 42 |
systemic artery | 2.00e-09 | 33 |
systemic arterial system | 2.00e-09 | 33 |
connective tissue | 4.03e-09 | 371 |
musculoskeletal system | 2.28e-08 | 167 |
multilaminar epithelium | 2.53e-08 | 83 |
surface structure | 1.39e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.59e-11 | 14 |
musculoskeletal system disease | 6.58e-07 | 5 |
myotonic disease | 6.58e-07 | 5 |
muscle tissue disease | 6.58e-07 | 5 |
myopathy | 6.58e-07 | 5 |
muscular disease | 6.58e-07 | 5 |
myotonic dystrophy | 6.58e-07 | 5 |