FFCP PHASE1:Hg19::chr6:24877490..24877505,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9750 | |EntrezGene=9750 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13872 | |HGNC=13872 | ||
|TSSclassifier=strong | |||
|UniProt=F5H029 | |UniProt=F5H029 | ||
|association_with_transcript=35bp_to_ENST00000540914_5end | |association_with_transcript=35bp_to_ENST00000540914_5end | ||
|cluster_id=chr6:24877490..24877505,- | |||
|coexpression_cluster_id=C68 | |coexpression_cluster_id=C68 | ||
|description=CAGE_peak_9_at_FAM65B_5end | |description=CAGE_peak_9_at_FAM65B_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000039!1.24e-18!7;CL:0000586!1.24e-18!7;CL:0002541!4.18e-12!3;CL:0002322!8.47e-12!5;CL:0002536!5.48e-08!2;CL:0002537!1.11e-07!5 | |ontology_enrichment_celltype=CL:0000039!1.24e-18!7;CL:0000586!1.24e-18!7;CL:0002541!4.18e-12!3;CL:0002322!8.47e-12!5;CL:0002536!5.48e-08!2;CL:0002537!1.11e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;5.62e-26;19!CL:0000039;1.16e-22;7!CL:0000586;1.16e-22;7!CL:0002541;6.81e-20;3!CL:0002537;1.18e-12;5!CL:0002322;1.28e-11;5!CL:0000540;1.45e-09;6!CL:0000404;1.45e-09;6!CL:0002577;2.43e-09;3!CL:0000313;7.03e-08;1!CL:0002563;3.71e-07;4 | |ontology_enrichment_celltype_v019=CL:0000349;5.62e-26;19!CL:0000039;1.16e-22;7!CL:0000586;1.16e-22;7!CL:0002541;6.81e-20;3!CL:0002537;1.18e-12;5!CL:0002322;1.28e-11;5!CL:0000540;1.45e-09;6!CL:0000404;1.45e-09;6!CL:0002577;2.43e-09;3!CL:0000313;7.03e-08;1!CL:0002563;3.71e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.22e-26,19;CL:0000039,1.14e-22,7;CL:0000586,1.14e-22,7;CL:0002541,6.39e-20,3;CL:0002537,1.18e-12,5;CL:0002322,1.14e-11,5;CL:0000540,1.52e-09,6;CL:0000031,1.52e-09,6;CL:0000404,1.52e-09,6;CL:0002577,2.43e-09,3;CL:0000313,7.26e-08,1;CL:0000047,2.81e-07,8;CL:0002563,3.60e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000031;1.45e-09;6!UBERON:0003124;4.89e-08;1 | |ontology_enrichment_development_v019=CL:0000031;1.45e-09;6!UBERON:0003124;4.89e-08;1 | ||
|ontology_enrichment_disease=DOID:3095!3.81e-07!22;DOID:2994!3.81e-07!22 | |ontology_enrichment_disease=DOID:3095!3.81e-07!22;DOID:2994!3.81e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:1799;7.03e-08;1!DOID:10165;7.03e-08;1!DOID:2152;7.03e-08;1!DOID:1798;7.03e-08;1!DOID:3095;4.59e-07;22!DOID:2994;4.59e-07;22 | |ontology_enrichment_disease_v019=DOID:1799;7.03e-08;1!DOID:10165;7.03e-08;1!DOID:2152;7.03e-08;1!DOID:1798;7.03e-08;1!DOID:3095;4.59e-07;22!DOID:2994;4.59e-07;22 | ||
|ontology_enrichment_disease_v019_2=DOID:1799,6.80e-08,1;DOID:10165,6.80e-08,1;DOID:1798,6.80e-08,1;DOID:2152,7.26e-08,1;DOID:3095,4.56e-07,22;DOID:2994,4.56e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.57e-30!14;UBERON:0000158!1.57e-30!14;UBERON:0003124!3.99e-19!7;UBERON:0000478!9.35e-17!24;UBERON:0000305!2.40e-13!7;UBERON:0000476!4.18e-12!3;UBERON:0000920!4.18e-12!3;UBERON:0004871!1.24e-11!8;UBERON:0001987!3.76e-09!4;UBERON:0004340!3.76e-09!4;UBERON:0004923!3.59e-08!57;UBERON:0000473!2.91e-07!8;UBERON:0000991!3.32e-07!21;UBERON:0009196!3.32e-07!21;UBERON:0009117!3.32e-07!21;UBERON:0005564!3.32e-07!21;UBERON:0004176!7.80e-07!22 | |ontology_enrichment_uberon=UBERON:0005631!1.57e-30!14;UBERON:0000158!1.57e-30!14;UBERON:0003124!3.99e-19!7;UBERON:0000478!9.35e-17!24;UBERON:0000305!2.40e-13!7;UBERON:0000476!4.18e-12!3;UBERON:0000920!4.18e-12!3;UBERON:0004871!1.24e-11!8;UBERON:0001987!3.76e-09!4;UBERON:0004340!3.76e-09!4;UBERON:0004923!3.59e-08!57;UBERON:0000473!2.91e-07!8;UBERON:0000991!3.32e-07!21;UBERON:0009196!3.32e-07!21;UBERON:0009117!3.32e-07!21;UBERON:0005564!3.32e-07!21;UBERON:0004176!7.80e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.65e-31;10!UBERON:0000158;5.65e-31;10!UBERON:0000478;3.86e-25;24!UBERON:0003124;6.81e-20;3!UBERON:0000920;6.81e-20;3!UBERON:0000305;3.25e-15;7!UBERON:0001987;4.82e-15;4!UBERON:0004911;7.03e-08;1!UBERON:0001242;3.71e-07;4!UBERON:0001262;3.71e-07;4!UBERON:0004786;3.71e-07;4!UBERON:0004808;3.71e-07;4!UBERON:0001277;3.71e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0005631;5.65e-31;10!UBERON:0000158;5.65e-31;10!UBERON:0000478;3.86e-25;24!UBERON:0003124;6.81e-20;3!UBERON:0000920;6.81e-20;3!UBERON:0000305;3.25e-15;7!UBERON:0001987;4.82e-15;4!UBERON:0004911;7.03e-08;1!UBERON:0001242;3.71e-07;4!UBERON:0001262;3.71e-07;4!UBERON:0004786;3.71e-07;4!UBERON:0004808;3.71e-07;4!UBERON:0001277;3.71e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.22e-44,14;UBERON:0000158,2.22e-44,14;UBERON:0003124,1.69e-32,7;UBERON:0000478,3.62e-25,24;UBERON:0000920,6.39e-20,3;UBERON:0000305,3.08e-15,7;UBERON:0001987,4.83e-15,4;UBERON:0004340,4.83e-15,4;UBERON:0004871,2.37e-13,8;UBERON:0004923,1.09e-11,66;UBERON:0004911,7.26e-08,1;UBERON:0001242,3.60e-07,4;UBERON:0001262,3.60e-07,4;UBERON:0004786,3.60e-07,4;UBERON:0004808,3.60e-07,4;UBERON:0001277,3.60e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,2.62129646556207,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08371286321253,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763188581434,0,0.813357600086629,3.52447587052259,2.52320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.03677448557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15316871458641,0,3.93107381328584,0,0,0,0,0,0,0,0,0,0,0,0,2.29632954224082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.245047853692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.983689014391,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,91.4391376545353,35.9327263807493,92.7625320339681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,7.14748103602986,11.040190262402,13.363626746407,32.5381182926558,5.67905079091546,5.33034776018635,0,0,0,0,0,0,0,0,0,1.30586246527318,1.55488378577335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0,0,0,0,0,0,0,1.12527203925513,1.10031549277787,1.66176135211674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,14.9286815854411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59.5192903791307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8767724291064,0.687051635306701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,3.77358670045332,0.26721740526556,8.08675115906635,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.366724332548599,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,2.62129646556207,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08371286321253,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763188581434,0,0.813357600086629,3.52447587052259,2.52320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.03677448557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15316871458641,0,3.93107381328584,0,0,0,0,0,0,0,0,0,0,0,0,2.29632954224082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.245047853692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.983689014391,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,91.4391376545353,35.9327263807493,92.7625320339681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,7.14748103602986,11.040190262402,13.363626746407,32.5381182926558,5.67905079091546,5.33034776018635,0,0,0,0,0,0,0,0,0,1.30586246527318,1.55488378577335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0,0,0,0,0,0,0,1.12527203925513,1.10031549277787,1.66176135211674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,14.9286815854411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59.5192903791307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8767724291064,0.687051635306701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,3.77358670045332,0.26721740526556,8.08675115906635,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.366724332548599,0,0,0,0 | ||
|short_description=p9@FAM65B | |short_description=p9@FAM65B | ||
}} | }} |
Latest revision as of 06:58, 17 September 2015
Short description: | p9@FAM65B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_FAM65B_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 35bp_to_ENST00000540914_5end |
EntrezGene: | FAM65B |
HGNC: | 13872 |
UniProt: | F5H029 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.22e-26 | 19 |
germ line cell | 1.14e-22 | 7 |
germ cell | 1.14e-22 | 7 |
chorionic membrane mesenchymal stem cell | 6.39e-20 | 3 |
amnion mesenchymal stem cell | 1.18e-12 | 5 |
embryonic stem cell | 1.14e-11 | 5 |
neuron | 1.52e-09 | 6 |
neuroblast | 1.52e-09 | 6 |
electrically signaling cell | 1.52e-09 | 6 |
placental epithelial cell | 2.43e-09 | 3 |
serous secreting cell | 7.26e-08 | 1 |
neuronal stem cell | 2.81e-07 | 8 |
intestinal epithelial cell | 3.60e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.22e-44 | 14 |
membranous layer | 2.22e-44 | 14 |
chorion | 1.69e-32 | 7 |
extraembryonic structure | 3.62e-25 | 24 |
egg chorion | 6.39e-20 | 3 |
amnion | 3.08e-15 | 7 |
placenta | 4.83e-15 | 4 |
allantois | 4.83e-15 | 4 |
somatic layer of lateral plate mesoderm | 2.37e-13 | 8 |
organ component layer | 1.09e-11 | 66 |
epithelium of female gonad | 7.26e-08 | 1 |
intestinal mucosa | 3.60e-07 | 4 |
wall of intestine | 3.60e-07 | 4 |
gastrointestinal system mucosa | 3.60e-07 | 4 |
gastrointestinal system epithelium | 3.60e-07 | 4 |
intestinal epithelium | 3.60e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 6.80e-08 | 1 |
endocrine pancreas cancer | 6.80e-08 | 1 |
pancreatic endocrine carcinoma | 6.80e-08 | 1 |
ovary epithelial cancer | 7.26e-08 | 1 |
germ cell and embryonal cancer | 4.56e-07 | 22 |
germ cell cancer | 4.56e-07 | 22 |