FFCP PHASE1:Hg19::chr2:46656327..46656345,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=388946 | |EntrezGene=388946 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000432241,ENST00000449601,uc002rux.2_5end | |association_with_transcript=0bp_to_ENST00000432241,ENST00000449601,uc002rux.2_5end | ||
|cluster_id=chr2:46656327..46656345,+ | |||
|coexpression_cluster_id=C159 | |||
|description=CAGE_peak_3_at_LOC388946_5end | |description=CAGE_peak_3_at_LOC388946_5end | ||
|id=chr2:46656327..46656345,+ | |id=chr2:46656327..46656345,+ | ||
|ontology_enrichment_celltype=CL:0000039!5.93e-30!7;CL:0000586!5.93e-30!7;CL:0002541!3.66e-25!3 | |ontology_enrichment_celltype=CL:0000039!5.93e-30!7;CL:0000586!5.93e-30!7;CL:0002541!3.66e-25!3 | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.62e-27;7!CL:0000586;2.62e-27;7!CL:0002541;3.52e-16;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.90e-27,7;CL:0000586,2.90e-27,7;CL:0002541,3.52e-16,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.59e-29;10!UBERON:0005564;1.59e-29;10!UBERON:0003124;2.62e-13;1 | |||
|ontology_enrichment_disease=DOID:3095!3.13e-13!22;DOID:2994!3.13e-13!22;DOID:1036!5.59e-10!8;DOID:2355!9.70e-10!1 | |ontology_enrichment_disease=DOID:3095!3.13e-13!22;DOID:2994!3.13e-13!22;DOID:1036!5.59e-10!8;DOID:2355!9.70e-10!1 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.35e-13;8!DOID:2355;5.71e-13;1!DOID:3095;7.12e-09;22!DOID:2994;7.12e-09;22!DOID:74;4.04e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.32e-13,8;DOID:2355,6.06e-13,1;DOID:3095,7.34e-09,22;DOID:2994,7.34e-09,22;DOID:74,4.17e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0003135!3.08e-27!11;UBERON:0000473!1.28e-26!8;UBERON:0000476!3.66e-25!3;UBERON:0000920!3.66e-25!3;UBERON:0003124!3.27e-19!7;UBERON:0005631!1.26e-14!14;UBERON:0000158!1.26e-14!14;UBERON:0003101!2.06e-13!22;UBERON:0000079!2.06e-13!22;UBERON:0000991!4.62e-10!21;UBERON:0009196!4.62e-10!21;UBERON:0009117!4.62e-10!21;UBERON:0005564!4.62e-10!21;UBERON:0004176!1.35e-09!22;UBERON:0001301!2.26e-09!1;UBERON:0000478!1.80e-08!24;UBERON:0003133!6.72e-08!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.08e-37;8!UBERON:0003135;7.54e-27;11!UBERON:0003124;3.52e-16;3!UBERON:0000920;3.52e-16;3!UBERON:0000991;4.53e-14;21!UBERON:0003101;1.99e-13;22!UBERON:0000079;1.99e-13;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.92e-37,8;UBERON:0003135,8.17e-27,11;UBERON:0000920,3.52e-16,3;UBERON:0003124,1.68e-15,7;UBERON:0000991,4.72e-14,21;UBERON:0009196,4.72e-14,21;UBERON:0009117,4.72e-14,21;UBERON:0005564,4.72e-14,21;UBERON:0004176,2.07e-13,22;UBERON:0003101,2.07e-13,22;UBERON:0000079,2.07e-13,22;UBERON:0003133,1.52e-08,48;UBERON:0005631,4.94e-08,14;UBERON:0000158,4.94e-08,14;UBERON:0005156,7.11e-07,59;UBERON:0000990,7.11e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83370705696798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81251743096572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95403963262472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0,0,12.4816590390776,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.0537211958508,0,0.108647371922008,0.31900115973192,1.4655614944298,1.5991043280559,0,0,0,2.70714792740617,2.35275041181287,1.1747511088309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.2015066337104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.14473746943305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,2.14176542458162,4.80991329478009,3.85958578046349,0,7.42631242538746,6.96706738406064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83370705696798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81251743096572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95403963262472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0,0,12.4816590390776,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.0537211958508,0,0.108647371922008,0.31900115973192,1.4655614944298,1.5991043280559,0,0,0,2.70714792740617,2.35275041181287,1.1747511088309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.2015066337104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.14473746943305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,2.14176542458162,4.80991329478009,3.85958578046349,0,7.42631242538746,6.96706738406064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@LOC388946 | |short_description=p3@LOC388946 | ||
}} | }} |
Latest revision as of 10:49, 17 September 2015
Short description: | p3@LOC388946 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LOC388946_5end |
Coexpression cluster: | C159_choriocarcinoma_pancreatic_placenta_chorionic_testicular_bronchioalveolar_seminal |
Association with transcript: | 0bp_to_ENST00000432241, ENST00000449601, uc002rux.2_5end |
EntrezGene: | LOC388946 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.90e-27 | 7 |
germ cell | 2.90e-27 | 7 |
chorionic membrane mesenchymal stem cell | 3.52e-16 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 7.92e-37 | 8 |
male reproductive organ | 8.17e-27 | 11 |
egg chorion | 3.52e-16 | 3 |
chorion | 1.68e-15 | 7 |
gonad | 4.72e-14 | 21 |
indifferent external genitalia | 4.72e-14 | 21 |
indifferent gonad | 4.72e-14 | 21 |
gonad primordium | 4.72e-14 | 21 |
external genitalia | 2.07e-13 | 22 |
male organism | 2.07e-13 | 22 |
male reproductive system | 2.07e-13 | 22 |
reproductive organ | 1.52e-08 | 48 |
extraembryonic membrane | 4.94e-08 | 14 |
membranous layer | 4.94e-08 | 14 |
reproductive structure | 7.11e-07 | 59 |
reproductive system | 7.11e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.32e-13 | 8 |
anemia | 6.06e-13 | 1 |
germ cell and embryonal cancer | 7.34e-09 | 22 |
germ cell cancer | 7.34e-09 | 22 |
hematopoietic system disease | 4.17e-07 | 2 |