FFCP PHASE1:Hg19::chr1:32169727..32169739,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1307 | |EntrezGene=1307 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2193 | |HGNC=2193 | ||
|TSSclassifier=strong | |||
|UniProt=A6NDR9,Q07092 | |UniProt=A6NDR9,Q07092 | ||
|association_with_transcript=28bp_to_ENST00000271069,NM_001856,uc001btk.1,uc001btl.3_5end | |association_with_transcript=28bp_to_ENST00000271069,NM_001856,uc001btk.1,uc001btl.3_5end | ||
|cluster_id=chr1:32169727..32169739,- | |||
|description=CAGE_peak_5_at_COL16A1_5end | |description=CAGE_peak_5_at_COL16A1_5end | ||
|id=chr1:32169727..32169739,- | |id=chr1:32169727..32169739,- | ||
|ontology_enrichment_celltype=CL:0000055!7.97e-19!180;CL:0000183!7.40e-13!59;CL:0000680!7.50e-13!57;CL:0000056!7.50e-13!57;CL:0000355!7.50e-13!57;CL:0000187!1.02e-11!54;CL:0000192!4.87e-11!42;CL:0000514!4.87e-11!42;CL:0000393!2.50e-10!60;CL:0000211!2.50e-10!60;CL:0000359!5.13e-10!32;CL:0002371!3.37e-09!591;CL:0002321!9.94e-09!248;CL:0000220!1.48e-08!246;CL:0000057!2.99e-08!75;CL:0000144!5.66e-08!625 | |ontology_enrichment_celltype=CL:0000055!7.97e-19!180;CL:0000183!7.40e-13!59;CL:0000680!7.50e-13!57;CL:0000056!7.50e-13!57;CL:0000355!7.50e-13!57;CL:0000187!1.02e-11!54;CL:0000192!4.87e-11!42;CL:0000514!4.87e-11!42;CL:0000393!2.50e-10!60;CL:0000211!2.50e-10!60;CL:0000359!5.13e-10!32;CL:0002371!3.37e-09!591;CL:0002321!9.94e-09!248;CL:0000220!1.48e-08!246;CL:0000057!2.99e-08!75;CL:0000144!5.66e-08!625 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.57e-10;42!CL:0002368;9.71e-10;13!CL:0000359;1.53e-09;32!CL:0000154;3.43e-08;6!CL:0002159;5.54e-08;14!CL:0002251;3.03e-07;20!CL:0000192;4.88e-07;43!CL:0000622;5.05e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,9.88e-13,42;CL:0000359,2.13e-10,32;CL:0002368,9.57e-10,13;CL:0000192,1.41e-09,43;CL:0000514,1.41e-09,43;CL:0002321,1.17e-08,250;CL:0000680,2.37e-08,58;CL:0000056,2.37e-08,58;CL:0000355,2.37e-08,58;CL:0000154,3.31e-08,6;CL:0002159,5.70e-08,14;CL:0000187,1.26e-07,55;CL:0000223,2.80e-07,58;CL:0002251,2.88e-07,20;CL:0000622,5.17e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;4.88e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.79e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.90e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000486!2.24e-14!82;UBERON:0000914!1.35e-12!83;UBERON:0002329!1.35e-12!83;UBERON:0003077!1.35e-12!83;UBERON:0003059!1.35e-12!83;UBERON:0007282!1.35e-12!83;UBERON:0009618!1.35e-12!83;UBERON:0007285!1.35e-12!83;UBERON:0001134!1.12e-11!61;UBERON:0002036!1.12e-11!61;UBERON:0003082!1.12e-11!61;UBERON:0002385!1.69e-11!63;UBERON:0001015!1.69e-11!63;UBERON:0000383!1.69e-11!63;UBERON:0004290!9.80e-11!70;UBERON:0000475!1.75e-10!365;UBERON:0003102!6.15e-10!95;UBERON:0000468!1.04e-07!659;UBERON:0005256!1.49e-07!143;UBERON:0002100!1.74e-07!216;UBERON:0004573!6.82e-07!33;UBERON:0004571!6.82e-07!33;UBERON:0001637!7.03e-07!42;UBERON:0003509!7.03e-07!42;UBERON:0004572!7.03e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.54e-09;33!UBERON:0004571;3.54e-09;33!UBERON:0003688;1.13e-08;6!UBERON:0002358;1.13e-08;6!UBERON:0003684;1.13e-08;6!UBERON:0001178;1.13e-08;6!UBERON:0001637;2.39e-07;42!UBERON:0003509;2.39e-07;42!UBERON:0004572;2.39e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,1.92e-10,33;UBERON:0004571,1.92e-10,33;UBERON:0000486,6.49e-10,83;UBERON:0001637,9.77e-10,42;UBERON:0003509,9.77e-10,42;UBERON:0004572,9.77e-10,42;UBERON:0003688,1.41e-08,6;UBERON:0002358,1.41e-08,6;UBERON:0003684,1.41e-08,6;UBERON:0001178,1.41e-08,6;UBERON:0004872,6.11e-08,83;UBERON:0001134,2.30e-07,62;UBERON:0002036,2.30e-07,62;UBERON:0003082,2.30e-07,62;UBERON:0002385,6.34e-07,64;UBERON:0001015,6.34e-07,64;UBERON:0000383,6.34e-07,64;UBERON:0002329,8.10e-07,71;UBERON:0003059,8.10e-07,71;UBERON:0007282,8.10e-07,71;UBERON:0004290,8.10e-07,71;UBERON:0009618,8.10e-07,71 | |||
|phase1_expression=3.99692434395225,3.21150785836475,3.52386010239928,5.00366491765652,3.12872766099101,5.23403114460221,0,0,0.261185628199839,0.491467873003018,0.697801167972428,2.40285509343189,3.69273769519835,0.495065411840187,0.662794751455832,0.672325146451775,0.602694528023977,0,3.90346239032406,0.123121058076788,0.612002073732759,0.313454721478088,0,0.136874425072884,0.251085279189606,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,6.43594857135249,6.024118375565,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79007586580942,1.0843174571537,2.50668955317945,1.15877215168659,0.795285947051099,5.35298357332899,0.283604451492204,0.221729397462564,0.43917392846563,0.327447688744282,9.83597278389864,5.19098219898201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4662572514208,7.9515512271251,2.40597972162702,8.87141511448566,6.88407889797153,1.06400514659507,1.12135520028461,6.4049397437823,4.68668341992604,0.311211035399766,0.538842688278752,0,1.36221684880438,1.72852777344,0,0,0.570471821544449,0,0,0.323745888736263,0,0.61246251376468,0,0,0,0.494533858557114,0.910161361938026,0,0,0.250237039743928,0.277064115484183,0.438977620880838,0.612975591598039,0.600952235626387,0.680593098960126,0.89694817844431,0.427114777637135,0,3.60109315301283,0.515262646192195,2.83404594050192,0.930584281657949,3.03797398034279,1.26668106709558,3.02920529092937,0.460249493211497,0,1.06502877754984,0.10075209822764,0.67824236924195,5.60456474173561,5.45492241181669,2.86804595389004,0.243947412259191,0.132529768321485,0.232387885739037,0.10366105501537,0.756962552626885,0,1.56449532329816,2.57296375277154,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0.171567810298526,7.90202054942104,1.1240175325762,3.31745608958382,5.18495292887766,0,1.03993478527958,0,0,0.469634776943287,0.144366447761074,0,0,0,0,0,0,0,2.81201501960331,1.6798212819886,2.55195175036296,4.20925056703387,2.90633938513962,4.98397482914775,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,1.34557301214433,0.87192013766656,0.8800594298514,14.6077038806289,0,1.690605505112,0.26593811658487,1.04007436911366,0.514414748524284,0,0.266422179016099,0.428933980974443,0.542621605391443,2.46972101034231,0,0.355391948742546,0.791951872933429,0.904318131178758,1.74306691720059,0.399891964728228,0,0,0,1.4377491329495,5.7430967917057,0,2.17171960001369,0.821905290201534,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,0,0.813795071099207,0.415941723061614,0.892144943985809,1.41932173530541,2.6942525448324,0.300946099727719,0,1.03473071292505,0.664225598535437,0,0.0868836144680828,5.67823356641948,6.51972505240626,0,0,0,1.21251028578504,3.32870879020994,4.23346410661552,6.69891081110698,13.8115775959256,5.3325417942284,5.63812256725084,3.07024349440022,6.91671860917512,2.96836132889982,0.925258162815933,0.710246901252508,0.574890092096664,0,1.04589340613963,0,3.60911646545913,2.94659164594868,1.49258782613989,1.45672934405374,0.655622074797121,0,0,0,0,0,0,0,0,0,0.541892875087706,0.501689773854853,0,0,0,0,0,0,0,0.650756789328606,0,0,0,5.16838984196555,4.55042172225565,4.82051789532479,0.290012154876366,0.154048617114644,0.460511024178389,0.689182862422653,0.751941714077915,0.725083469571143,0.511359764496605,2.04773681987496,2.97512847649761,4.03599141466723,10.3366297120613,4.95673126192195,0,7.24068397710472,1.3940745403212,5.85263802334569,1.06461206063404,0.869932992075073,4.26245703939016,2.71937284809783,1.86079184679834,0.632758849437452,0,1.02359116524534,0,1.90921948755562,3.92474320099615,0.719489830333259,1.09814811894422,0.589062011728432,1.61745985258653,0,2.94880919367287,0,3.65570234446927,1.05650146756755,0.272999822815972,1.41405431953713,0,3.30819206127675,5.30751180192976,1.75380354101505,1.15755106853338,0,2.02910376962704,1.239293992399,0.845086807596724,0.286822704408103,0.392996164052485,2.1400263088875,0.354761064070598,0.844430541190656,0.329294892959902,0,0.349934720244983,5.96577098898175,4.02181365321472,2.17781969722645,0.0941438007767792,12.4846558074657,6.73885902670502,11.0857538384169,2.52695740227655,0,0,0,0,0,0,0,0,0.427296284509893,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,1.78178808499583,0,0,0,0,3.46088135876195,0,0,0.276283915531148,0,0,0.246169610922139,0,0.0898683511473268,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0.139423744278603,0.692552326534174,0,0,0.448788222048861,0,0.31900115973192,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0.884612114798832,0,0,0,0,0,0,0,0,0,1.17590876897253,0,0,0,0,0,0,0.193978032976839,0,0.225980740780532,0,1.39100228192093,0.189932387867636,0,0,0,0,0,0,0,0,0,0.9427761384671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| ||
|short_description=p5@COL16A1 | |short_description=p5@COL16A1 | ||
}} | }} |
Latest revision as of 13:46, 17 September 2015
Short description: | p5@COL16A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL16A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 28bp_to_ENST00000271069, NM_001856, uc001btk.1, uc001btl.3_5end |
EntrezGene: | COL16A1 |
HGNC: | 2193 |
UniProt: | A6NDR9Q07092 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 9.88e-13 | 42 |
vascular associated smooth muscle cell | 2.13e-10 | 32 |
respiratory epithelial cell | 9.57e-10 | 13 |
smooth muscle cell | 1.41e-09 | 43 |
smooth muscle myoblast | 1.41e-09 | 43 |
embryonic cell | 1.17e-08 | 250 |
muscle precursor cell | 2.37e-08 | 58 |
myoblast | 2.37e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.37e-08 | 58 |
protein secreting cell | 3.31e-08 | 6 |
general ecto-epithelial cell | 5.70e-08 | 14 |
muscle cell | 1.26e-07 | 55 |
endodermal cell | 2.80e-07 | 58 |
epithelial cell of alimentary canal | 2.88e-07 | 20 |
acinar cell | 5.17e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 1.92e-10 | 33 |
systemic arterial system | 1.92e-10 | 33 |
multilaminar epithelium | 6.49e-10 | 83 |
artery | 9.77e-10 | 42 |
arterial blood vessel | 9.77e-10 | 42 |
arterial system | 9.77e-10 | 42 |
omentum | 1.41e-08 | 6 |
peritoneum | 1.41e-08 | 6 |
abdominal cavity | 1.41e-08 | 6 |
visceral peritoneum | 1.41e-08 | 6 |
splanchnic layer of lateral plate mesoderm | 6.11e-08 | 83 |
skeletal muscle tissue | 2.30e-07 | 62 |
striated muscle tissue | 2.30e-07 | 62 |
myotome | 2.30e-07 | 62 |
muscle tissue | 6.34e-07 | 64 |
musculature | 6.34e-07 | 64 |
musculature of body | 6.34e-07 | 64 |
somite | 8.10e-07 | 71 |
presomitic mesoderm | 8.10e-07 | 71 |
presumptive segmental plate | 8.10e-07 | 71 |
dermomyotome | 8.10e-07 | 71 |
trunk paraxial mesoderm | 8.10e-07 | 71 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.90e-07 | 14 |