FFCP PHASE1:Hg19::chr2:55459808..55459860,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6233 | |EntrezGene=6233 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10417 | |HGNC=10417 | ||
|TSSclassifier=strong | |||
|UniProt=P62979,B2RDW1 | |UniProt=P62979,B2RDW1 | ||
|association_with_transcript=0bp_to_ENST00000404735,ENST00000463185,ENST00000471772,ENST00000478196,ENST00000494756,NM_001177413_5end | |association_with_transcript=0bp_to_ENST00000404735,ENST00000463185,ENST00000471772,ENST00000478196,ENST00000494756,NM_001177413_5end | ||
|cluster_id=chr2:55459808..55459860,+ | |||
|coexpression_cluster_id=C3538 | |coexpression_cluster_id=C3538 | ||
|description=CAGE_peak_1_at_RPS27A_5end | |description=CAGE_peak_1_at_RPS27A_5end | ||
|id=chr2:55459808..55459860,+ | |id=chr2:55459808..55459860,+ | ||
|ontology_enrichment_celltype=CL:0000012!2.53e-40!682;CL:0000548!2.34e-38!679;CL:0000004!2.34e-38!679;CL:0000255!2.34e-38!679;CL:0000003!5.53e-28!722;CL:0000144!2.24e-23!625;CL:0002321!5.46e-23!248;CL:0000220!2.50e-22!246;CL:0000066!1.27e-19!254;CL:0002371!1.60e-15!591;CL:0000063!6.73e-15!578;CL:0000222!1.78e-10!119;CL:0000393!1.23e-09!60;CL:0000211!1.23e-09!60;CL:0000680!2.52e-08!57;CL:0000056!2.52e-08!57;CL:0000355!2.52e-08!57;CL:0000076!4.43e-08!62;CL:0000187!4.47e-08!54;CL:0000223!4.77e-08!59;CL:0002076!7.28e-08!43;CL:0000055!3.63e-07!180;CL:0000183!3.70e-07!59 | |ontology_enrichment_celltype=CL:0000012!2.53e-40!682;CL:0000548!2.34e-38!679;CL:0000004!2.34e-38!679;CL:0000255!2.34e-38!679;CL:0000003!5.53e-28!722;CL:0000144!2.24e-23!625;CL:0002321!5.46e-23!248;CL:0000220!2.50e-22!246;CL:0000066!1.27e-19!254;CL:0002371!1.60e-15!591;CL:0000063!6.73e-15!578;CL:0000222!1.78e-10!119;CL:0000393!1.23e-09!60;CL:0000211!1.23e-09!60;CL:0000680!2.52e-08!57;CL:0000056!2.52e-08!57;CL:0000355!2.52e-08!57;CL:0000076!4.43e-08!62;CL:0000187!4.47e-08!54;CL:0000223!4.77e-08!59;CL:0002076!7.28e-08!43;CL:0000055!3.63e-07!180;CL:0000183!3.70e-07!59 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.30e-23,250;CL:0000066,6.35e-20,253;CL:0000222,1.88e-10,121;CL:0000393,3.28e-09,61;CL:0000211,3.28e-09,61;CL:0000223,4.16e-08,58;CL:0000076,5.02e-08,63;CL:0002076,5.90e-08,42;CL:0000680,6.21e-08,58;CL:0000056,6.21e-08,58;CL:0000355,6.21e-08,58;CL:0000187,1.11e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!3.05e-21!239;DOID:162!5.21e-21!235;DOID:0050687!2.98e-11!143;DOID:305!9.93e-11!106;DOID:0050686!6.34e-10!137;DOID:2531!1.45e-07!51;DOID:0060083!1.45e-07!51 | |ontology_enrichment_disease=DOID:14566!3.05e-21!239;DOID:162!5.21e-21!235;DOID:0050687!2.98e-11!143;DOID:305!9.93e-11!106;DOID:0050686!6.34e-10!137;DOID:2531!1.45e-07!51;DOID:0060083!1.45e-07!51 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.05e-21,239;DOID:162,5.21e-21,235;DOID:0050687,2.98e-11,143;DOID:305,9.93e-11,106;DOID:0050686,6.34e-10,137;DOID:2531,1.45e-07,51;DOID:0060083,1.45e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000490!7.79e-09!138;UBERON:0000486!2.43e-08!82;UBERON:0004290!2.49e-08!70;UBERON:0000914!3.76e-08!83;UBERON:0002329!3.76e-08!83;UBERON:0003077!3.76e-08!83;UBERON:0003059!3.76e-08!83;UBERON:0007282!3.76e-08!83;UBERON:0009618!3.76e-08!83;UBERON:0007285!3.76e-08!83;UBERON:0001737!4.25e-07!9;UBERON:0003104!5.84e-07!238;UBERON:0009142!5.84e-07!238;UBERON:0001134!8.01e-07!61;UBERON:0002036!8.01e-07!61;UBERON:0003082!8.01e-07!61 | |ontology_enrichment_uberon=UBERON:0000490!7.79e-09!138;UBERON:0000486!2.43e-08!82;UBERON:0004290!2.49e-08!70;UBERON:0000914!3.76e-08!83;UBERON:0002329!3.76e-08!83;UBERON:0003077!3.76e-08!83;UBERON:0003059!3.76e-08!83;UBERON:0007282!3.76e-08!83;UBERON:0009618!3.76e-08!83;UBERON:0007285!3.76e-08!83;UBERON:0001737!4.25e-07!9;UBERON:0003104!5.84e-07!238;UBERON:0009142!5.84e-07!238;UBERON:0001134!8.01e-07!61;UBERON:0002036!8.01e-07!61;UBERON:0003082!8.01e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.24e-07;9!UBERON:0001557;4.24e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,5.16e-10,148;UBERON:0000486,5.03e-08,83;UBERON:0002329,5.53e-08,71;UBERON:0003059,5.53e-08,71;UBERON:0007282,5.53e-08,71;UBERON:0004290,5.53e-08,71;UBERON:0009618,5.53e-08,71;UBERON:0007503,1.32e-07,78;UBERON:0003077,1.35e-07,72;UBERON:0007285,1.35e-07,72;UBERON:0007524,1.50e-07,73;UBERON:0001737,4.25e-07,9 | |||
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|short_description=p1@RPS27A | |short_description=p1@RPS27A | ||
}} | }} |
Latest revision as of 17:18, 17 September 2015
Short description: | p1@RPS27A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPS27A_5end |
Coexpression cluster: | C3538_iPS_Mallassezderived_Bronchial_HES3GFP_acute_chronic_hepatocellular |
Association with transcript: | 0bp_to_ENST00000404735, ENST00000463185, ENST00000471772, ENST00000478196, ENST00000494756, NM_001177413_5end |
EntrezGene: | RPS27A |
HGNC: | 10417 |
UniProt: | P62979B2RDW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.30e-23 | 250 |
epithelial cell | 6.35e-20 | 253 |
mesodermal cell | 1.88e-10 | 121 |
electrically responsive cell | 3.28e-09 | 61 |
electrically active cell | 3.28e-09 | 61 |
endodermal cell | 4.16e-08 | 58 |
squamous epithelial cell | 5.02e-08 | 63 |
endo-epithelial cell | 5.90e-08 | 42 |
muscle precursor cell | 6.21e-08 | 58 |
myoblast | 6.21e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.21e-08 | 58 |
muscle cell | 1.11e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 5.16e-10 | 148 |
multilaminar epithelium | 5.03e-08 | 83 |
somite | 5.53e-08 | 71 |
presomitic mesoderm | 5.53e-08 | 71 |
presumptive segmental plate | 5.53e-08 | 71 |
dermomyotome | 5.53e-08 | 71 |
trunk paraxial mesoderm | 5.53e-08 | 71 |
epithelial vesicle | 1.32e-07 | 78 |
paraxial mesoderm | 1.35e-07 | 72 |
presumptive paraxial mesoderm | 1.35e-07 | 72 |
dense mesenchyme tissue | 1.50e-07 | 73 |
larynx | 4.25e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.05e-21 | 239 |
cancer | 5.21e-21 | 235 |
cell type cancer | 2.98e-11 | 143 |
carcinoma | 9.93e-11 | 106 |
organ system cancer | 6.34e-10 | 137 |
hematologic cancer | 1.45e-07 | 51 |
immune system cancer | 1.45e-07 | 51 |