FFCP PHASE1:Hg19::chr13:51484119..51484151,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79621 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25671 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=192bp_to_ENST00000494721_5end | |||
|cluster_id=chr13:51484119..51484151,+ | |||
|coexpression_cluster_id=C3382 | |||
|description=CAGE_peak_3_at_RNASEH2B_5end | |||
|id=chr13:51484119..51484151,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.01e-40!172;CL:0000566!1.01e-40!172;CL:0002032!4.36e-37!165;CL:0000837!4.36e-37!165;CL:0000988!9.07e-36!182;CL:0000738!1.79e-28!140;CL:0002031!8.94e-28!124;CL:0002087!1.62e-25!119;CL:0000542!7.60e-24!53;CL:0000051!7.60e-24!53;CL:0000838!2.09e-23!52;CL:0000763!6.12e-15!112;CL:0000049!6.12e-15!112;CL:0000945!6.85e-12!24;CL:0000826!6.85e-12!24;CL:0000084!1.24e-11!25;CL:0000827!1.24e-11!25;CL:0000791!8.62e-11!18;CL:0000789!8.62e-11!18;CL:0002420!8.62e-11!18;CL:0002419!8.62e-11!18;CL:0000790!8.62e-11!18;CL:0000236!1.12e-08!14;CL:0000219!2.14e-08!390;CL:0002320!9.02e-08!365;CL:0000134!1.11e-07!358;CL:0000557!1.29e-07!71;CL:0000839!1.88e-07!70;CL:0000625!5.44e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.22e-14;53!CL:0000945;3.79e-12;24!CL:0000084;6.13e-12;25!CL:0000791;3.02e-11;18!CL:0000789;3.02e-11;18!CL:0002419;3.02e-11;18!CL:0000236;7.05e-09;13!CL:0002087;1.28e-08;104!CL:0000738;2.03e-07;136!CL:0000625;2.87e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,7.98e-43,168;CL:0002032,4.18e-39,161;CL:0000837,4.18e-39,161;CL:0000988,2.76e-37,177;CL:0000738,2.52e-30,136;CL:0002031,2.02e-29,120;CL:0002087,4.21e-27,115;CL:0000542,5.61e-24,53;CL:0000051,5.61e-24,53;CL:0000838,1.55e-23,52;CL:0000763,2.89e-16,108;CL:0000049,2.89e-16,108;CL:0000945,5.96e-12,24;CL:0000826,5.96e-12,24;CL:0000084,1.08e-11,25;CL:0000827,1.08e-11,25;CL:0000791,7.60e-11,18;CL:0000789,7.60e-11,18;CL:0002420,7.60e-11,18;CL:0002419,7.60e-11,18;CL:0000790,7.60e-11,18;CL:0000236,1.02e-08,14;CL:0000557,1.81e-08,67;CL:0000219,1.97e-08,386;CL:0000839,2.68e-08,66;CL:0002320,1.01e-07,361;CL:0000134,1.11e-07,354;CL:0000625,5.05e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;1.22e-14;53!CL:0000790;3.02e-11;18 | |||
|ontology_enrichment_disease=DOID:2531!2.03e-16!51;DOID:0060083!2.03e-16!51;DOID:1240!1.10e-13!39;DOID:8692!5.64e-11!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.32e-10;31!DOID:1240;5.04e-10;39!DOID:2531;2.00e-09;51!DOID:0060083;2.00e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.66e-16,51;DOID:0060083,1.66e-16,51;DOID:1240,9.34e-14,39;DOID:8692,4.96e-11,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.46e-11!102;UBERON:0003061!1.46e-11!102;UBERON:0002193!1.70e-10!112;UBERON:0002384!2.08e-08!375;UBERON:0002371!1.12e-07!80;UBERON:0001474!5.79e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.96e-12,98;UBERON:0003061,1.96e-12,98;UBERON:0002193,2.24e-11,108;UBERON:0002405,2.15e-09,93;UBERON:0002371,2.07e-08,76;UBERON:0002384,2.32e-08,371;UBERON:0001474,1.16e-07,82;UBERON:0001434,2.79e-07,100;UBERON:0004765,4.12e-07,90 | |||
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| |||
|short_description=p3@RNASEH2B | |||
}} |
Latest revision as of 18:15, 17 September 2015
Short description: | p3@RNASEH2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RNASEH2B_5end |
Coexpression cluster: | C3382_Hodgkin_acute_chronic_CD19_CD133_thymus_granulocyte |
Association with transcript: | 192bp_to_ENST00000494721_5end |
EntrezGene: | RNASEH2B |
HGNC: | 25671 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 7.98e-43 | 168 |
hematopoietic oligopotent progenitor cell | 4.18e-39 | 161 |
hematopoietic multipotent progenitor cell | 4.18e-39 | 161 |
hematopoietic cell | 2.76e-37 | 177 |
leukocyte | 2.52e-30 | 136 |
hematopoietic lineage restricted progenitor cell | 2.02e-29 | 120 |
nongranular leukocyte | 4.21e-27 | 115 |
lymphocyte | 5.61e-24 | 53 |
common lymphoid progenitor | 5.61e-24 | 53 |
lymphoid lineage restricted progenitor cell | 1.55e-23 | 52 |
myeloid cell | 2.89e-16 | 108 |
common myeloid progenitor | 2.89e-16 | 108 |
lymphocyte of B lineage | 5.96e-12 | 24 |
pro-B cell | 5.96e-12 | 24 |
T cell | 1.08e-11 | 25 |
pro-T cell | 1.08e-11 | 25 |
mature alpha-beta T cell | 7.60e-11 | 18 |
alpha-beta T cell | 7.60e-11 | 18 |
immature T cell | 7.60e-11 | 18 |
mature T cell | 7.60e-11 | 18 |
immature alpha-beta T cell | 7.60e-11 | 18 |
B cell | 1.02e-08 | 14 |
granulocyte monocyte progenitor cell | 1.81e-08 | 67 |
motile cell | 1.97e-08 | 386 |
myeloid lineage restricted progenitor cell | 2.68e-08 | 66 |
connective tissue cell | 1.01e-07 | 361 |
mesenchymal cell | 1.11e-07 | 354 |
CD8-positive, alpha-beta T cell | 5.05e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.96e-12 | 98 |
blood island | 1.96e-12 | 98 |
hemolymphoid system | 2.24e-11 | 108 |
immune system | 2.15e-09 | 93 |
bone marrow | 2.07e-08 | 76 |
connective tissue | 2.32e-08 | 371 |
bone element | 1.16e-07 | 82 |
skeletal system | 2.79e-07 | 100 |
skeletal element | 4.12e-07 | 90 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.66e-16 | 51 |
immune system cancer | 1.66e-16 | 51 |
leukemia | 9.34e-14 | 39 |
myeloid leukemia | 4.96e-11 | 31 |