FFCP PHASE1:Hg19::chr7:22259867..22259876,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:22259867..22259876,- to FFCP PHASE1:Hg19::chr7:22259867..22259876,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9771 | |EntrezGene=9771 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16862 | |HGNC=16862 | ||
|TSSclassifier=strong | |||
|UniProt=C9JHM4 | |UniProt=C9JHM4 | ||
|association_with_transcript=-10bp_to_ENST00000420196_5end | |||
|cluster_id=chr7:22259867..22259876,- | |||
|coexpression_cluster_id=C1887 | |||
|description=CAGE_peak_13_at_RAPGEF5_5end | |||
|id=chr7:22259867..22259876,- | |||
|ontology_enrichment_celltype=CL:0002139!9.16e-20!24;CL:0000115!5.43e-13!35;CL:0000071!4.44e-12!18;CL:0002546!4.44e-12!18;CL:0005020!4.64e-10!6;CL:0002138!4.64e-10!6;CL:0005022!4.64e-10!6;CL:0002543!2.29e-09!6;CL:0002078!3.58e-09!44 | |||
|ontology_enrichment_celltype_v019=CL:0002138;6.89e-09;6!CL:0002139;1.19e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,5.73e-09,6;CL:0002138,5.73e-09,6;CL:0005022,5.73e-09,6;CL:0002139,9.99e-08,24 | |||
|ontology_enrichment_development_v019=UBERON:0007297;9.51e-12;2!CL:0005022;6.89e-09;6!UBERON:0004872;1.25e-07;7!UBERON:0000358;3.93e-07;1!UBERON:0004140;3.93e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.12e-50!115;UBERON:0004111!4.44e-20!241;UBERON:0000477!1.31e-18!286;UBERON:0000025!1.77e-17!194;UBERON:0001049!5.74e-16!57;UBERON:0005068!5.74e-16!57;UBERON:0006241!5.74e-16!57;UBERON:0007135!5.74e-16!57;UBERON:0003075!2.32e-13!86;UBERON:0007284!2.32e-13!86;UBERON:0000055!5.04e-13!69;UBERON:0002346!2.55e-12!90;UBERON:0001986!4.44e-12!18;UBERON:0004638!4.44e-12!18;UBERON:0004852!4.44e-12!18;UBERON:0002616!1.43e-11!59;UBERON:0000483!3.17e-11!309;UBERON:0001017!6.23e-11!82;UBERON:0005743!6.25e-11!86;UBERON:0000119!6.34e-11!312;UBERON:0003080!1.06e-10!42;UBERON:0002049!2.84e-10!79;UBERON:0007798!2.84e-10!79;UBERON:0004872!5.83e-10!84;UBERON:0002780!7.25e-10!41;UBERON:0001890!7.25e-10!41;UBERON:0006240!7.25e-10!41;UBERON:0002465!1.14e-09!10;UBERON:0000955!1.86e-09!69;UBERON:0006238!1.86e-09!69;UBERON:0000468!2.18e-09!659;UBERON:0000487!3.00e-09!22;UBERON:0001981!3.80e-09!60;UBERON:0007500!3.80e-09!60;UBERON:0004537!3.80e-09!60;UBERON:0006965!3.80e-09!60;UBERON:0002298!4.01e-09!8;UBERON:0001009!4.08e-09!113;UBERON:0002020!4.41e-09!34;UBERON:0003528!4.41e-09!34;UBERON:0000073!4.53e-09!94;UBERON:0001016!4.53e-09!94;UBERON:0001893!7.77e-09!34;UBERON:0002791!3.44e-08!33;UBERON:0001638!5.06e-08!9;UBERON:0003920!5.06e-08!9;UBERON:0004582!5.06e-08!9;UBERON:0000467!6.83e-08!625;UBERON:0000480!7.85e-08!626;UBERON:0006914!9.68e-08!25;UBERON:0004535!1.44e-07!110;UBERON:0001473!2.82e-07!8;UBERON:0004536!2.82e-07!8;UBERON:0006558!2.82e-07!8;UBERON:0001869!3.10e-07!32;UBERON:0002619!6.24e-07!22;UBERON:0003076!8.96e-07!15;UBERON:0003057!8.96e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002465;5.43e-09;10!UBERON:0003978;2.15e-08;3!UBERON:0000946;2.15e-08;3!UBERON:0002106;4.07e-08;3!UBERON:0006947;4.07e-08;3!UBERON:0004054;4.07e-08;3!UBERON:0002135;3.93e-07;1!UBERON:0002171;3.93e-07;1!UBERON:0006518;3.93e-07;1!UBERON:0008949;3.93e-07;1!UBERON:0000101;3.93e-07;1!UBERON:0002167;3.93e-07;1!UBERON:0001473;9.06e-07;8!UBERON:0004536;9.06e-07;8!UBERON:0006558;9.06e-07;8!UBERON:0002405;9.81e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002465,4.46e-09,10;UBERON:0007023,9.45e-09,114;UBERON:0003978,1.70e-08,3;UBERON:0009751,1.70e-08,3;UBERON:0000946,1.70e-08,3;UBERON:0002523,1.70e-08,3;UBERON:0005983,1.70e-08,3;UBERON:0002165,1.70e-08,3;UBERON:0002062,1.70e-08,3;UBERON:0007280,1.70e-08,3;UBERON:0002106,1.83e-08,3;UBERON:0004854,1.83e-08,3;UBERON:0009034,1.83e-08,3;UBERON:0002095,1.83e-08,3;UBERON:0004782,1.83e-08,3;UBERON:0003281,1.83e-08,3;UBERON:0009664,1.83e-08,3;UBERON:0002296,1.83e-08,3;UBERON:0005602,1.83e-08,3;UBERON:0001179,1.83e-08,3;UBERON:0006293,1.83e-08,3;UBERON:0006947,4.72e-08,3;UBERON:0004054,4.72e-08,3;UBERON:0003887,1.81e-07,12;UBERON:0002135,3.73e-07,1;UBERON:0002171,4.43e-07,1;UBERON:0006518,4.43e-07,1;UBERON:0008949,4.43e-07,1;UBERON:0000101,4.43e-07,1;UBERON:0002167,4.43e-07,1;UBERON:0004111,5.29e-07,240;UBERON:0002146,7.82e-07,1;UBERON:0005623,7.82e-07,1;UBERON:0001473,7.91e-07,8;UBERON:0004536,7.91e-07,8;UBERON:0006558,7.91e-07,8;UBERON:0000029,9.25e-07,1 | |||
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| ||
|short_description=p13@RAPGEF5 | |||
}} | }} |
Latest revision as of 18:43, 17 September 2015
Short description: | p13@RAPGEF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_RAPGEF5_5end |
Coexpression cluster: | C1887_lung_Endothelial_adipose_heart_spleen_Hepatocyte_penis |
Association with transcript: | -10bp_to_ENST00000420196_5end |
EntrezGene: | RAPGEF5 |
HGNC: | 16862 |
UniProt: | C9JHM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 5.73e-09 | 6 |
endothelial cell of lymphatic vessel | 5.73e-09 | 6 |
vascular lymphangioblast | 5.73e-09 | 6 |
endothelial cell of vascular tree | 9.99e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
lymphoid system | 4.46e-09 | 10 |
adult organism | 9.45e-09 | 114 |
valve | 1.70e-08 | 3 |
cardiac mesenchyme | 1.70e-08 | 3 |
cardial valve | 1.70e-08 | 3 |
tunica intima | 1.70e-08 | 3 |
heart layer | 1.70e-08 | 3 |
endocardium | 1.70e-08 | 3 |
endocardial cushion | 1.70e-08 | 3 |
presumptive endocardium | 1.70e-08 | 3 |
spleen | 1.83e-08 | 3 |
gastrointestinal system mesentery | 1.83e-08 | 3 |
stomach region | 1.83e-08 | 3 |
mesentery | 1.83e-08 | 3 |
gastrointestinal system serosa | 1.83e-08 | 3 |
mesentery of stomach | 1.83e-08 | 3 |
gut mesentery | 1.83e-08 | 3 |
dorsal mesentery | 1.83e-08 | 3 |
dorsal mesogastrium | 1.83e-08 | 3 |
peritoneal cavity | 1.83e-08 | 3 |
spleen primordium | 1.83e-08 | 3 |
male genital duct | 4.72e-08 | 3 |
internal male genitalia | 4.72e-08 | 3 |
intraembryonic coelom | 1.81e-07 | 12 |
mitral valve | 3.73e-07 | 1 |
lower lobe of right lung | 4.43e-07 | 1 |
right lung lobe | 4.43e-07 | 1 |
lower lobe of lung | 4.43e-07 | 1 |
lobe of lung | 4.43e-07 | 1 |
right lung | 4.43e-07 | 1 |
anatomical conduit | 5.29e-07 | 240 |
pulmonary valve | 7.82e-07 | 1 |
semi-lunar valve | 7.82e-07 | 1 |
lymphatic vessel | 7.91e-07 | 8 |
lymph vasculature | 7.91e-07 | 8 |
lymphatic part of lymphoid system | 7.91e-07 | 8 |
lymph node | 9.25e-07 | 1 |