FFCP PHASE1:Hg19::chr13:52733937..52733950,-: Difference between revisions
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|id=chr13:52733937..52733950,-
|short_description=p8@NEK3
|description=CAGE_peak_8_at_NEK3_5end
|association_with_transcript=45bp_to_ENST00000339406,ENST00000548127...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4752 | |EntrezGene=4752 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7746 | |HGNC=7746 | ||
|TSSclassifier=strong | |||
|UniProt=P51956,G3V202 | |UniProt=P51956,G3V202 | ||
|association_with_transcript=45bp_to_ENST00000339406,ENST00000548127,NM_001146099,NM_002498,NR_027415,uc010tgx.1,uc010tgy.1_5end | |||
|cluster_id=chr13:52733937..52733950,- | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_8_at_NEK3_5end | |||
|id=chr13:52733937..52733950,- | |||
|ontology_enrichment_celltype=CL:0000039!5.83e-08!7;CL:0000586!5.83e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.54e-44;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.54e-44,12;CL:0000223,1.06e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.86e-48;11!UBERON:0009497;5.57e-41;13!UBERON:0001041;3.42e-18;30!UBERON:0003104;1.94e-17;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:7;3.71e-13;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,3.82e-14,39;DOID:305,3.05e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0003135!2.05e-07!11;UBERON:0000473!5.83e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.67e-28;19!UBERON:0006925;2.67e-28;19!UBERON:0002423;1.09e-21;25!UBERON:0002365;1.07e-16;31!UBERON:0002330;1.07e-16;31!UBERON:0002368;3.47e-15;33!UBERON:0000949;1.47e-11;43!UBERON:0002417;1.09e-07;58!UBERON:0000916;1.09e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.67e-28,19;UBERON:0006925,2.67e-28,19;UBERON:0008836,2.67e-28,19;UBERON:0008835,1.51e-24,22;UBERON:0003894,1.51e-24,22;UBERON:0009854,1.64e-23,23;UBERON:0007499,1.09e-21,25;UBERON:0009497,1.09e-21,25;UBERON:0000015,1.09e-21,25;UBERON:0002423,1.09e-21,25;UBERON:0006235,1.09e-21,25;UBERON:0004161,1.09e-21,25;UBERON:0009856,6.97e-21,26;UBERON:0002365,1.26e-17,31;UBERON:0002330,1.26e-17,31;UBERON:0002368,1.09e-15,35;UBERON:0000949,2.44e-12,45;UBERON:0003929,2.23e-10,54;UBERON:0005172,2.23e-10,54;UBERON:0005173,2.23e-10,54;UBERON:0002530,1.52e-09,59;UBERON:0002417,2.15e-09,60;UBERON:0000916,2.15e-09,60;UBERON:0004921,2.25e-07,118;UBERON:0005911,5.27e-07,82 | |||
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| ||
|short_description=p8@NEK3 | |||
}} | }} |
Latest revision as of 19:27, 17 September 2015
Short description: | p8@NEK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_NEK3_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | 45bp_to_ENST00000339406, ENST00000548127, NM_001146099, NM_002498, NR_027415, uc010tgx.1, uc010tgy.1_5end |
EntrezGene: | NEK3 |
HGNC: | 7746 |
UniProt: | P51956G3V202 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.54e-44 | 12 |
endodermal cell | 1.06e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 2.67e-28 | 19 |
digestive gland | 2.67e-28 | 19 |
liver bud | 2.67e-28 | 19 |
hepatic diverticulum | 1.51e-24 | 22 |
liver primordium | 1.51e-24 | 22 |
digestive tract diverticulum | 1.64e-23 | 23 |
epithelial sac | 1.09e-21 | 25 |
epithelium of foregut-midgut junction | 1.09e-21 | 25 |
anatomical boundary | 1.09e-21 | 25 |
hepatobiliary system | 1.09e-21 | 25 |
foregut-midgut junction | 1.09e-21 | 25 |
septum transversum | 1.09e-21 | 25 |
sac | 6.97e-21 | 26 |
exocrine gland | 1.26e-17 | 31 |
exocrine system | 1.26e-17 | 31 |
endocrine gland | 1.09e-15 | 35 |
endocrine system | 2.44e-12 | 45 |
gut epithelium | 2.23e-10 | 54 |
abdomen element | 2.23e-10 | 54 |
abdominal segment element | 2.23e-10 | 54 |
gland | 1.52e-09 | 59 |
abdominal segment of trunk | 2.15e-09 | 60 |
abdomen | 2.15e-09 | 60 |
subdivision of digestive tract | 2.25e-07 | 118 |
endo-epithelium | 5.27e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 3.82e-14 | 39 |
carcinoma | 3.05e-08 | 106 |