FFCP PHASE1:Hg19::chr10:29811632..29811647,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6840 | |EntrezGene=6840 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11480 | |HGNC=11480 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-68bp_to_uc010qdw.1_5end | |association_with_transcript=-68bp_to_uc010qdw.1_5end | ||
|cluster_id=chr10:29811632..29811647,- | |||
|coexpression_cluster_id=C610 | |coexpression_cluster_id=C610 | ||
|description=CAGE_peak_20_at_SVIL_5end | |description=CAGE_peak_20_at_SVIL_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000710!7.53e-22!20;CL:0000075!1.30e-20!27;CL:0000148!2.32e-18!10;CL:0000541!2.32e-18!10;CL:0000147!6.84e-16!14;CL:0002077!6.22e-12!33;CL:0000133!1.33e-10!59;CL:0002567!4.07e-10!3;CL:0000325!1.10e-09!39;CL:0000333!1.98e-08!41;CL:0000221!3.94e-08!71;CL:0002589!4.71e-07!2 | |ontology_enrichment_celltype=CL:0000710!7.53e-22!20;CL:0000075!1.30e-20!27;CL:0000148!2.32e-18!10;CL:0000541!2.32e-18!10;CL:0000147!6.84e-16!14;CL:0002077!6.22e-12!33;CL:0000133!1.33e-10!59;CL:0002567!4.07e-10!3;CL:0000325!1.10e-09!39;CL:0000333!1.98e-08!41;CL:0000221!3.94e-08!71;CL:0002589!4.71e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000148;2.61e-88;10!CL:0002567;3.12e-74;3!CL:0000147;3.14e-63;14!CL:0000710;2.14e-44;20!CL:0000075;5.54e-33;27!CL:0002077;4.03e-23;34!CL:0000346;1.81e-09;3!CL:1000428;1.81e-09;3!CL:0000149;1.64e-07;4 | |ontology_enrichment_celltype_v019=CL:0000148;2.61e-88;10!CL:0002567;3.12e-74;3!CL:0000147;3.14e-63;14!CL:0000710;2.14e-44;20!CL:0000075;5.54e-33;27!CL:0002077;4.03e-23;34!CL:0000346;1.81e-09;3!CL:1000428;1.81e-09;3!CL:0000149;1.64e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.61e-88,10;CL:0000541,2.61e-88,10;CL:0002567,2.14e-74,3;CL:0000147,3.14e-63,14;CL:0000710,2.14e-44,20;CL:0000075,5.54e-33,27;CL:0000333,4.33e-28,41;CL:0002077,2.94e-26,34;CL:0000133,7.47e-20,59;CL:0000221,2.20e-16,72;CL:0000346,1.81e-09,3;CL:1000428,1.81e-09,3;CL:0000149,1.80e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000133;1.88e-11;59!CL:0000221;1.28e-09;72 | |ontology_enrichment_development_v019=CL:0000133;1.88e-11;59!CL:0000221;1.28e-09;72 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;6.43e-14;2 | |ontology_enrichment_disease_v019=DOID:1909;6.43e-14;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,6.43e-14,2 | |||
|ontology_enrichment_uberon=UBERON:0001529!4.71e-07!2;UBERON:0007204!4.71e-07!2;UBERON:0000488!7.97e-07!4 | |ontology_enrichment_uberon=UBERON:0001529!4.71e-07!2;UBERON:0007204!4.71e-07!2;UBERON:0000488!7.97e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000412;1.81e-09;3!UBERON:0001992;1.81e-09;3!UBERON:0001003;1.40e-07;15!UBERON:0007376;1.40e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0000412;1.81e-09;3!UBERON:0001992;1.81e-09;3!UBERON:0001003;1.40e-07;15!UBERON:0007376;1.40e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,1.81e-09,3;UBERON:0001992,1.81e-09,3;UBERON:0001003,1.40e-07,15;UBERON:0007376,1.40e-07,15;UBERON:0007383,1.40e-07,15 | |||
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| ||
|short_description=p20@SVIL | |short_description=p20@SVIL | ||
}} | }} |
Latest revision as of 20:53, 17 September 2015
Short description: | p20@SVIL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_SVIL_5end |
Coexpression cluster: | C610_melanoma_Melanocyte_migratory_mycosis_cerebellum_epithelioid_retina |
Association with transcript: | -68bp_to_uc010qdw.1_5end |
EntrezGene: | SVIL |
HGNC: | 11480 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.61e-88 | 10 |
melanoblast | 2.61e-88 | 10 |
light melanocyte | 2.14e-74 | 3 |
pigment cell | 3.14e-63 | 14 |
neurecto-epithelial cell | 2.14e-44 | 20 |
columnar/cuboidal epithelial cell | 5.54e-33 | 27 |
migratory neural crest cell | 4.33e-28 | 41 |
ecto-epithelial cell | 2.94e-26 | 34 |
neurectodermal cell | 7.47e-20 | 59 |
ectodermal cell | 2.20e-16 | 72 |
hair follicle dermal papilla cell | 1.81e-09 | 3 |
stem cell of epidermis | 1.81e-09 | 3 |
visual pigment cell | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 1.81e-09 | 3 |
papillary layer of dermis | 1.81e-09 | 3 |
skin epidermis | 1.40e-07 | 15 |
outer epithelium | 1.40e-07 | 15 |
enveloping layer of ectoderm | 1.40e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 6.43e-14 | 2 |