FFCP PHASE1:Hg19::chr16:77246202..77246229,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100130958 | |EntrezGene=100130958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=37236 | |HGNC=37236 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=30bp_to_uc002ffb.3_5end | |association_with_transcript=30bp_to_uc002ffb.3_5end | ||
|cluster_id=chr16:77246202..77246229,+ | |||
|description=CAGE_peak_1_at_SYCE1L_5end | |description=CAGE_peak_1_at_SYCE1L_5end | ||
|id=chr16:77246202..77246229,+ | |id=chr16:77246202..77246229,+ | ||
|ontology_enrichment_celltype=CL:0000115!1.50e-15!35;CL:0002078!1.82e-14!44;CL:0000213!9.73e-14!57;CL:0000215!9.73e-14!57;CL:0002139!1.74e-13!24;CL:0000066!1.81e-10!254;CL:0000071!3.35e-10!18;CL:0002546!3.35e-10!18;CL:1000497!2.34e-09!18;CL:0002518!2.34e-09!18;CL:1000449!1.44e-08!16;CL:0000076!2.02e-08!62;CL:0002681!9.09e-07!13;CL:0002584!9.09e-07!13 | |ontology_enrichment_celltype=CL:0000115!1.50e-15!35;CL:0002078!1.82e-14!44;CL:0000213!9.73e-14!57;CL:0000215!9.73e-14!57;CL:0002139!1.74e-13!24;CL:0000066!1.81e-10!254;CL:0000071!3.35e-10!18;CL:0002546!3.35e-10!18;CL:1000497!2.34e-09!18;CL:0002518!2.34e-09!18;CL:1000449!1.44e-08!16;CL:0000076!2.02e-08!62;CL:0002681!9.09e-07!13;CL:0002584!9.09e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002139;5.09e-16;24!CL:0000115;1.93e-14;36!CL:0000071;6.62e-12;18!CL:1000497;9.23e-12;17!CL:0002518;9.23e-12;17!CL:1000449;5.11e-11;15!CL:0002078;6.74e-11;45!CL:0000213;1.82e-09;58!CL:0000215;1.82e-09;58!CL:0002681;9.33e-09;12!CL:0002584;9.33e-09;12!CL:1000507;1.48e-07;10!CL:1000494;1.48e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,9.12e-18,36;CL:0002078,1.76e-16,45;CL:0002139,2.67e-16,24;CL:0000213,1.70e-15,58;CL:0000215,1.70e-15,58;CL:0000066,2.54e-12,253;CL:0000071,3.06e-12,18;CL:0002546,3.06e-12,18;CL:1000497,4.63e-12,17;CL:0002518,4.63e-12,17;CL:1000449,4.18e-11,15;CL:0002681,7.68e-09,12;CL:0002584,7.68e-09,12;CL:0000076,3.73e-08,63;CL:1000507,1.33e-07,10;CL:1000494,1.33e-07,10;CL:1000413,8.50e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;6.62e-12;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000487!2.06e-10!22;UBERON:0001986!3.35e-10!18;UBERON:0004638!3.35e-10!18;UBERON:0004852!3.35e-10!18;UBERON:0000080!5.13e-09!18;UBERON:0002120!5.13e-09!18;UBERON:0004875!5.13e-09!18;UBERON:0005721!5.13e-09!18;UBERON:0005754!5.13e-09!18;UBERON:0007297!5.13e-09!18;UBERON:0006914!5.43e-09!25;UBERON:0006555!1.26e-08!17;UBERON:0005103!1.26e-08!17;UBERON:0000083!1.26e-08!17;UBERON:0009201!1.26e-08!17;UBERON:0004819!1.26e-08!17;UBERON:0006553!1.26e-08!17;UBERON:0003074!1.26e-08!17;UBERON:0003060!1.26e-08!17;UBERON:0004211!1.44e-08!16;UBERON:0001285!1.44e-08!16;UBERON:0007684!1.44e-08!16;UBERON:0003220!1.44e-08!16;UBERON:0004208!1.44e-08!16;UBERON:0004876!6.02e-08!20;UBERON:0002113!1.14e-07!27;UBERON:0003918!1.14e-07!27;UBERON:0005095!1.14e-07!27;UBERON:0007687!1.14e-07!27;UBERON:0006554!1.66e-07!44;UBERON:0001008!2.23e-07!45;UBERON:0000058!2.30e-07!26;UBERON:0003887!3.56e-07!21;UBERON:0000489!8.98e-07!32;UBERON:0001225!9.09e-07!13;UBERON:0008987!9.09e-07!13 | |ontology_enrichment_uberon=UBERON:0000487!2.06e-10!22;UBERON:0001986!3.35e-10!18;UBERON:0004638!3.35e-10!18;UBERON:0004852!3.35e-10!18;UBERON:0000080!5.13e-09!18;UBERON:0002120!5.13e-09!18;UBERON:0004875!5.13e-09!18;UBERON:0005721!5.13e-09!18;UBERON:0005754!5.13e-09!18;UBERON:0007297!5.13e-09!18;UBERON:0006914!5.43e-09!25;UBERON:0006555!1.26e-08!17;UBERON:0005103!1.26e-08!17;UBERON:0000083!1.26e-08!17;UBERON:0009201!1.26e-08!17;UBERON:0004819!1.26e-08!17;UBERON:0006553!1.26e-08!17;UBERON:0003074!1.26e-08!17;UBERON:0003060!1.26e-08!17;UBERON:0004211!1.44e-08!16;UBERON:0001285!1.44e-08!16;UBERON:0007684!1.44e-08!16;UBERON:0003220!1.44e-08!16;UBERON:0004208!1.44e-08!16;UBERON:0004876!6.02e-08!20;UBERON:0002113!1.14e-07!27;UBERON:0003918!1.14e-07!27;UBERON:0005095!1.14e-07!27;UBERON:0007687!1.14e-07!27;UBERON:0006554!1.66e-07!44;UBERON:0001008!2.23e-07!45;UBERON:0000058!2.30e-07!26;UBERON:0003887!3.56e-07!21;UBERON:0000489!8.98e-07!32;UBERON:0001225!9.09e-07!13;UBERON:0008987!9.09e-07!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0000487;1.28e-12;22!UBERON:0004638;6.62e-12;18!UBERON:0001986;6.62e-12;18!UBERON:0004852;6.62e-12;18!UBERON:0006555;5.11e-11;15!UBERON:0004819;5.11e-11;15!UBERON:0001285;5.11e-11;15!UBERON:0007684;5.11e-11;15!UBERON:0006914;8.04e-11;25!UBERON:0000490;1.26e-09;33!UBERON:0002113;1.61e-09;24!UBERON:0011143;1.61e-09;24!UBERON:0000353;2.91e-09;15!UBERON:0001225;9.33e-09;12!UBERON:0008987;9.33e-09;12!UBERON:0006554;1.45e-08;30!UBERON:0001008;1.45e-08;30!UBERON:0000489;5.55e-08;29!UBERON:0004211;1.48e-07;10!UBERON:0009773;1.48e-07;10!UBERON:0001231;1.48e-07;10!UBERON:0004810;1.48e-07;10!UBERON:0001851;2.76e-07;15 | |||
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| ||
|short_description=p1@SYCE1L | |short_description=p1@SYCE1L | ||
}} | }} |
Latest revision as of 22:34, 17 September 2015
Short description: | p1@SYCE1L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYCE1L_5end |
Coexpression cluster: | NA |
Association with transcript: | 30bp_to_uc002ffb.3_5end |
EntrezGene: | SYCE1L |
HGNC: | 37236 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 9.12e-18 | 36 |
meso-epithelial cell | 1.76e-16 | 45 |
endothelial cell of vascular tree | 2.67e-16 | 24 |
lining cell | 1.70e-15 | 58 |
barrier cell | 1.70e-15 | 58 |
epithelial cell | 2.54e-12 | 253 |
blood vessel endothelial cell | 3.06e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.06e-12 | 18 |
kidney cell | 4.63e-12 | 17 |
kidney epithelial cell | 4.63e-12 | 17 |
epithelial cell of nephron | 4.18e-11 | 15 |
kidney cortical cell | 7.68e-09 | 12 |
renal cortical epithelial cell | 7.68e-09 | 12 |
squamous epithelial cell | 3.73e-08 | 63 |
kidney tubule cell | 1.33e-07 | 10 |
nephron tubule epithelial cell | 1.33e-07 | 10 |
endothelial cell of artery | 8.50e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 5.69e-13 | 22 |
blood vessel endothelium | 3.06e-12 | 18 |
endothelium | 3.06e-12 | 18 |
cardiovascular system endothelium | 3.06e-12 | 18 |
excretory tube | 3.91e-11 | 16 |
kidney epithelium | 3.91e-11 | 16 |
nephron epithelium | 4.18e-11 | 15 |
renal tubule | 4.18e-11 | 15 |
nephron tubule | 4.18e-11 | 15 |
nephron | 4.18e-11 | 15 |
uriniferous tubule | 4.18e-11 | 15 |
nephrogenic mesenchyme | 4.18e-11 | 15 |
squamous epithelium | 6.14e-11 | 25 |
kidney | 3.50e-10 | 26 |
kidney mesenchyme | 3.50e-10 | 26 |
upper urinary tract | 3.50e-10 | 26 |
kidney rudiment | 3.50e-10 | 26 |
kidney field | 3.50e-10 | 26 |
parenchyma | 2.50e-09 | 15 |
cortex of kidney | 7.68e-09 | 12 |
renal parenchyma | 7.68e-09 | 12 |
cavitated compound organ | 1.42e-08 | 31 |
urinary system structure | 4.53e-08 | 47 |
renal system | 1.15e-07 | 48 |
nephron tubule epithelium | 1.33e-07 | 10 |
cortex | 2.10e-07 | 15 |
duct | 7.91e-07 | 19 |
endothelial tube | 8.50e-07 | 9 |
arterial system endothelium | 8.50e-07 | 9 |
endothelium of artery | 8.50e-07 | 9 |