FFCP PHASE1:Hg19::chr12:27485762..27485776,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56938 | |EntrezGene=56938 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18984 | |HGNC=18984 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYA1,F5H402 | |UniProt=Q8WYA1,F5H402 | ||
|association_with_transcript=-10bp_to_ENST00000544915,NM_001248002,NM_001248003,NM_001248004,NM_001248005,NM_020183_5end | |association_with_transcript=-10bp_to_ENST00000544915,NM_001248002,NM_001248003,NM_001248004,NM_001248005,NM_020183_5end | ||
|cluster_id=chr12:27485762..27485776,+ | |||
|coexpression_cluster_id=C3273 | |||
|description=CAGE_peak_3_at_ARNTL2_5end | |description=CAGE_peak_3_at_ARNTL2_5end | ||
|id=chr12:27485762..27485776,+ | |id=chr12:27485762..27485776,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.31e-12!254;CL:0000220!8.61e-11!246;CL:0002321!1.22e-10!248;CL:0002076!5.24e-10!43;CL:0000223!7.17e-09!59;CL:0000548!4.18e-08!679;CL:0000004!4.18e-08!679;CL:0000255!4.18e-08!679;CL:0000012!1.00e-07!682;CL:0000359!2.54e-07!32 | |ontology_enrichment_celltype=CL:0000066!6.31e-12!254;CL:0000220!8.61e-11!246;CL:0002321!1.22e-10!248;CL:0002076!5.24e-10!43;CL:0000223!7.17e-09!59;CL:0000548!4.18e-08!679;CL:0000004!4.18e-08!679;CL:0000255!4.18e-08!679;CL:0000012!1.00e-07!682;CL:0000359!2.54e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.01e-08;42!CL:0000359;6.35e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.23e-12,253;CL:0002076,2.52e-11,42;CL:0002321,7.67e-11,250;CL:0000223,4.59e-10,58;CL:0000359,3.25e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!1.49e-10!69;UBERON:0001981!3.49e-10!60;UBERON:0007500!3.49e-10!60;UBERON:0004537!3.49e-10!60;UBERON:0006965!3.49e-10!60;UBERON:0000490!5.46e-10!138;UBERON:0001637!6.04e-10!42;UBERON:0003509!6.04e-10!42;UBERON:0004572!6.04e-10!42;UBERON:0000480!1.17e-08!626;UBERON:0003104!1.31e-08!238;UBERON:0009142!1.31e-08!238;UBERON:0004119!2.01e-08!169;UBERON:0000925!2.01e-08!169;UBERON:0006595!2.01e-08!169;UBERON:0000467!2.15e-08!625;UBERON:0005256!2.22e-08!143;UBERON:0000926!4.06e-08!448;UBERON:0004120!4.06e-08!448;UBERON:0006603!4.06e-08!448;UBERON:0003914!4.30e-08!118;UBERON:0002100!6.30e-08!216;UBERON:0002049!8.50e-08!79;UBERON:0007798!8.50e-08!79;UBERON:0002050!1.68e-07!605;UBERON:0005423!1.68e-07!605;UBERON:0000923!2.05e-07!604;UBERON:0005291!2.05e-07!604;UBERON:0006598!2.05e-07!604;UBERON:0002532!2.05e-07!604;UBERON:0004573!2.17e-07!33;UBERON:0004571!2.17e-07!33;UBERON:0000486!3.37e-07!82;UBERON:0000922!4.66e-07!612;UBERON:0004111!8.67e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.33e-07;42!UBERON:0003509;1.33e-07;42!UBERON:0004572;1.33e-07;42!UBERON:0004573;5.03e-07;33!UBERON:0004571;5.03e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.72e-10,68;UBERON:0001637,3.24e-10,42;UBERON:0003509,3.24e-10,42;UBERON:0004572,3.24e-10,42;UBERON:0000490,4.43e-10,148;UBERON:0007500,5.92e-10,59;UBERON:0001981,5.92e-10,59;UBERON:0004537,5.92e-10,59;UBERON:0006965,5.92e-10,59;UBERON:0003914,2.61e-08,117;UBERON:0004573,1.55e-07,33;UBERON:0004571,1.55e-07,33;UBERON:0002049,2.07e-07,78;UBERON:0007798,2.07e-07,78;UBERON:0002100,9.66e-07,199 | |||
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| ||
|short_description=p3@ARNTL2 | |short_description=p3@ARNTL2 | ||
}} | }} |
Latest revision as of 00:12, 18 September 2015
Short description: | p3@ARNTL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARNTL2_5end |
Coexpression cluster: | C3273_osteosarcoma_endometrial_embryonic_astrocytoma_mucinous_Myoblast_prostate |
Association with transcript: | -10bp_to_ENST00000544915, NM_001248002, NM_001248003, NM_001248004, NM_001248005, NM_020183_5end |
EntrezGene: | ARNTL2 |
HGNC: | 18984 |
UniProt: | Q8WYA1F5H402 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.23e-12 | 253 |
endo-epithelial cell | 2.52e-11 | 42 |
embryonic cell | 7.67e-11 | 250 |
endodermal cell | 4.59e-10 | 58 |
vascular associated smooth muscle cell | 3.25e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
vessel | 2.72e-10 | 68 |
artery | 3.24e-10 | 42 |
arterial blood vessel | 3.24e-10 | 42 |
arterial system | 3.24e-10 | 42 |
unilaminar epithelium | 4.43e-10 | 148 |
epithelial tube open at both ends | 5.92e-10 | 59 |
blood vessel | 5.92e-10 | 59 |
blood vasculature | 5.92e-10 | 59 |
vascular cord | 5.92e-10 | 59 |
epithelial tube | 2.61e-08 | 117 |
systemic artery | 1.55e-07 | 33 |
systemic arterial system | 1.55e-07 | 33 |
vasculature | 2.07e-07 | 78 |
vascular system | 2.07e-07 | 78 |
trunk | 9.66e-07 | 199 |