FFCP PHASE1:Hg19::chr1:40915725..40915808,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:40915725..40915808,+ to FFCP PHASE1:Hg19::chr1:40915725..40915808,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=65243 | |EntrezGene=65243 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28053 | |HGNC=28053 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJL9,E7EN37,E9PS66 | |UniProt=Q9UJL9,E7EN37,E9PS66 | ||
|association_with_transcript=0bp_to_ENST00000361584,ENST00000411995,ENST00000431552,ENST00000469416,ENST00000484445,uc001cfl.1,uc001cfm.1_5end | |||
|cluster_id=chr1:40915725..40915808,+ | |||
|description=CAGE_peak_1_at_ZNF643_5end | |||
|id=chr1:40915725..40915808,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!2.70e-18!239;DOID:162!3.92e-18!235;DOID:0050686!2.20e-11!137;DOID:0050687!3.26e-11!143;DOID:3095!2.39e-08!22;DOID:2994!2.39e-08!22;DOID:305!3.80e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;6.03e-08;22!DOID:2994;6.03e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.11e-17,239;DOID:162,1.60e-17,235;DOID:0050686,7.66e-11,137;DOID:0050687,8.45e-11,143;DOID:3095,1.71e-08,22;DOID:2994,1.71e-08,22;DOID:305,6.71e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.15e-20!94;UBERON:0001016!3.15e-20!94;UBERON:0001017!2.82e-18!82;UBERON:0005743!3.46e-17!86;UBERON:0002780!4.00e-17!41;UBERON:0001890!4.00e-17!41;UBERON:0006240!4.00e-17!41;UBERON:0003080!6.80e-16!42;UBERON:0001049!8.71e-16!57;UBERON:0005068!8.71e-16!57;UBERON:0006241!8.71e-16!57;UBERON:0007135!8.71e-16!57;UBERON:0002020!2.49e-15!34;UBERON:0003528!2.49e-15!34;UBERON:0001869!3.77e-15!32;UBERON:0001893!5.27e-15!34;UBERON:0002791!1.86e-14!33;UBERON:0002346!2.29e-14!90;UBERON:0000955!4.31e-14!69;UBERON:0006238!4.31e-14!69;UBERON:0003056!3.42e-13!61;UBERON:0002616!4.68e-13!59;UBERON:0003075!8.12e-13!86;UBERON:0007284!8.12e-13!86;UBERON:0000924!1.35e-12!173;UBERON:0006601!1.35e-12!173;UBERON:0002619!4.87e-12!22;UBERON:0000956!5.97e-12!25;UBERON:0000203!5.97e-12!25;UBERON:0004121!2.37e-11!169;UBERON:0001950!5.06e-11!20;UBERON:0000033!3.72e-08!123;UBERON:0000153!4.64e-08!129;UBERON:0007811!4.64e-08!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.75e-14;32!UBERON:0002791;3.24e-14;32!UBERON:0003528;3.36e-14;34!UBERON:0002020;3.36e-14;34!UBERON:0001893;6.20e-14;34!UBERON:0002780;2.75e-13;41!UBERON:0001890;2.75e-13;41!UBERON:0002619;1.30e-12;22!UBERON:0000956;1.48e-12;25!UBERON:0000203;1.48e-12;25!UBERON:0001950;1.43e-11;20!UBERON:0000073;2.75e-10;53!UBERON:0002616;2.75e-10;53!UBERON:0001016;3.48e-09;83!UBERON:0000955;3.83e-08;68!UBERON:0001017;1.47e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.64e-22,89;UBERON:0001017,2.58e-19,81;UBERON:0002780,1.84e-17,41;UBERON:0001890,1.84e-17,41;UBERON:0003080,1.84e-17,41;UBERON:0006240,1.84e-17,41;UBERON:0001049,6.40e-17,56;UBERON:0005068,6.40e-17,56;UBERON:0006241,6.40e-17,56;UBERON:0007135,6.40e-17,56;UBERON:0000073,1.95e-16,53;UBERON:0002616,1.95e-16,53;UBERON:0003528,1.26e-15,34;UBERON:0002020,1.26e-15,34;UBERON:0001869,1.92e-15,32;UBERON:0001893,2.70e-15,34;UBERON:0002791,5.31e-15,32;UBERON:0000955,5.42e-15,68;UBERON:0006238,5.42e-15,68;UBERON:0003056,6.77e-14,61;UBERON:0002346,9.58e-14,86;UBERON:0002619,2.89e-12,22;UBERON:0003075,3.48e-12,82;UBERON:0007284,3.48e-12,82;UBERON:0000956,3.56e-12,25;UBERON:0000203,3.56e-12,25;UBERON:0004121,1.34e-11,171;UBERON:0000924,1.34e-11,171;UBERON:0006601,1.34e-11,171;UBERON:0001950,3.16e-11,20;UBERON:0010371,1.29e-09,104;UBERON:0011216,8.81e-09,223;UBERON:0010314,2.22e-07,132 | |||
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| ||
|short_description=p1@ZNF643 | |||
}} | }} |
Latest revision as of 01:35, 18 September 2015
Short description: | p1@ZNF643 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZNF643_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000361584, ENST00000411995, ENST00000431552, ENST00000469416, ENST00000484445, uc001cfl.1, uc001cfm.1_5end |
EntrezGene: | ZNF643 |
HGNC: | 28053 |
UniProt: | Q9UJL9E7EN37E9PS66 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 1.64e-22 | 89 |
central nervous system | 2.58e-19 | 81 |
regional part of forebrain | 1.84e-17 | 41 |
forebrain | 1.84e-17 | 41 |
anterior neural tube | 1.84e-17 | 41 |
future forebrain | 1.84e-17 | 41 |
neural tube | 6.40e-17 | 56 |
neural rod | 6.40e-17 | 56 |
future spinal cord | 6.40e-17 | 56 |
neural keel | 6.40e-17 | 56 |
regional part of nervous system | 1.95e-16 | 53 |
regional part of brain | 1.95e-16 | 53 |
brain grey matter | 1.26e-15 | 34 |
gray matter | 1.26e-15 | 34 |
cerebral hemisphere | 1.92e-15 | 32 |
telencephalon | 2.70e-15 | 34 |
regional part of telencephalon | 5.31e-15 | 32 |
brain | 5.42e-15 | 68 |
future brain | 5.42e-15 | 68 |
pre-chordal neural plate | 6.77e-14 | 61 |
neurectoderm | 9.58e-14 | 86 |
regional part of cerebral cortex | 2.89e-12 | 22 |
neural plate | 3.48e-12 | 82 |
presumptive neural plate | 3.48e-12 | 82 |
cerebral cortex | 3.56e-12 | 25 |
pallium | 3.56e-12 | 25 |
ectoderm-derived structure | 1.34e-11 | 171 |
ectoderm | 1.34e-11 | 171 |
presumptive ectoderm | 1.34e-11 | 171 |
neocortex | 3.16e-11 | 20 |
ecto-epithelium | 1.29e-09 | 104 |
organ system subdivision | 8.81e-09 | 223 |
structure with developmental contribution from neural crest | 2.22e-07 | 132 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.11e-17 | 239 |
cancer | 1.60e-17 | 235 |
organ system cancer | 7.66e-11 | 137 |
cell type cancer | 8.45e-11 | 143 |
germ cell and embryonal cancer | 1.71e-08 | 22 |
germ cell cancer | 1.71e-08 | 22 |
carcinoma | 6.71e-07 | 106 |