FFCP PHASE1:Hg19::chr5:52083733..52083821,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53918,3672 | |EntrezGene=53918,3672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8829,6134 | |HGNC=8829,6134 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BRX2 | |UniProt=Q9BRX2 | ||
|association_with_transcript=0bp_to_ENST00000274311,ENST00000504086,ENST00000506949,NM_015946,uc003jos.2,uc003jot.1,uc003jou.2,uc003jov.2_5end | |association_with_transcript=0bp_to_ENST00000274311,ENST00000504086,ENST00000506949,NM_015946,uc003jos.2,uc003jot.1,uc003jou.2,uc003jov.2_5end | ||
|cluster_id=chr5:52083733..52083821,+ | |||
|coexpression_cluster_id=C2823 | |||
|description=CAGE_peak_1_at_ITGA1_5end,CAGE_peak_2_at_PELO_5end | |description=CAGE_peak_1_at_ITGA1_5end,CAGE_peak_2_at_PELO_5end | ||
|id=chr5:52083733..52083821,+ | |id=chr5:52083733..52083821,+ | ||
|ontology_enrichment_celltype=CL:0000055!9.86e-07!180 | |ontology_enrichment_celltype=CL:0000055!9.86e-07!180 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!9.29e-16!659;UBERON:0000481!2.23e-14!347;UBERON:0000477!3.60e-13!286;UBERON:0000467!6.75e-12!625;UBERON:0000480!1.36e-11!626;UBERON:0007023!4.39e-11!115;UBERON:0000475!8.23e-10!365;UBERON:0003104!4.54e-09!238;UBERON:0009142!4.54e-09!238;UBERON:0005256!1.18e-08!143;UBERON:0000062!4.27e-08!511;UBERON:0000490!5.81e-08!138;UBERON:0000119!2.82e-07!312;UBERON:0002100!3.50e-07!216;UBERON:0000483!3.84e-07!309;UBERON:0004111!4.11e-07!241;UBERON:0002050!5.13e-07!605;UBERON:0005423!5.13e-07!605;UBERON:0000922!5.66e-07!612;UBERON:0002385!6.02e-07!63;UBERON:0001015!6.02e-07!63;UBERON:0000383!6.02e-07!63;UBERON:0000923!8.54e-07!604;UBERON:0005291!8.54e-07!604;UBERON:0006598!8.54e-07!604;UBERON:0002532!8.54e-07!604 | |ontology_enrichment_uberon=UBERON:0000468!9.29e-16!659;UBERON:0000481!2.23e-14!347;UBERON:0000477!3.60e-13!286;UBERON:0000467!6.75e-12!625;UBERON:0000480!1.36e-11!626;UBERON:0007023!4.39e-11!115;UBERON:0000475!8.23e-10!365;UBERON:0003104!4.54e-09!238;UBERON:0009142!4.54e-09!238;UBERON:0005256!1.18e-08!143;UBERON:0000062!4.27e-08!511;UBERON:0000490!5.81e-08!138;UBERON:0000119!2.82e-07!312;UBERON:0002100!3.50e-07!216;UBERON:0000483!3.84e-07!309;UBERON:0004111!4.11e-07!241;UBERON:0002050!5.13e-07!605;UBERON:0005423!5.13e-07!605;UBERON:0000922!5.66e-07!612;UBERON:0002385!6.02e-07!63;UBERON:0001015!6.02e-07!63;UBERON:0000383!6.02e-07!63;UBERON:0000923!8.54e-07!604;UBERON:0005291!8.54e-07!604;UBERON:0006598!8.54e-07!604;UBERON:0002532!8.54e-07!604 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.27e-11,114;UBERON:0003104,2.07e-10,160;UBERON:0009142,2.07e-10,160;UBERON:0005256,3.38e-09,122;UBERON:0011216,4.23e-09,223;UBERON:0001007,1.13e-07,145;UBERON:0001555,1.13e-07,145;UBERON:0007026,1.13e-07,145;UBERON:0000119,1.24e-07,309;UBERON:0000490,1.41e-07,148;UBERON:0000483,1.71e-07,306;UBERON:0001048,2.28e-07,160;UBERON:0004111,4.71e-07,240;UBERON:0004119,8.21e-07,160;UBERON:0000925,8.21e-07,160;UBERON:0006595,8.21e-07,160;UBERON:0002385,9.59e-07,64;UBERON:0001015,9.59e-07,64;UBERON:0000383,9.59e-07,64 | |||
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| ||
|short_description=p1@ITGA1,p2@PELO | |short_description=p1@ITGA1,p2@PELO | ||
}} | }} |
Latest revision as of 02:15, 18 September 2015
Short description: | p1@ITGA1, p2@PELO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ITGA1_5end, CAGE_peak_2_at_PELO_5end |
Coexpression cluster: | C2823_mesenchymal_alveolar_spleen_Smooth_normal_mesodermal_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000274311, ENST00000504086, ENST00000506949, NM_015946, uc003jos.2, uc003jot.1, uc003jou.2, uc003jov.2_5end |
EntrezGene: | 53918,3672 |
HGNC: | 6134&submit=Submit 8829, 6134 |
UniProt: | Q9BRX2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.27e-11 | 114 |
mesenchyme | 2.07e-10 | 160 |
entire embryonic mesenchyme | 2.07e-10 | 160 |
trunk mesenchyme | 3.38e-09 | 122 |
organ system subdivision | 4.23e-09 | 223 |
digestive system | 1.13e-07 | 145 |
digestive tract | 1.13e-07 | 145 |
primitive gut | 1.13e-07 | 145 |
cell layer | 1.24e-07 | 309 |
unilaminar epithelium | 1.41e-07 | 148 |
epithelium | 1.71e-07 | 306 |
primordium | 2.28e-07 | 160 |
anatomical conduit | 4.71e-07 | 240 |
endoderm-derived structure | 8.21e-07 | 160 |
endoderm | 8.21e-07 | 160 |
presumptive endoderm | 8.21e-07 | 160 |
muscle tissue | 9.59e-07 | 64 |
musculature | 9.59e-07 | 64 |
musculature of body | 9.59e-07 | 64 |