FFCP PHASE1:Hg19::chr5:54281739..54281753,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:54281739..54281753,-
|short_description=p3@ESM1
|description=CAGE_peak_3_at_ESM1_5end
|association_with_transcript=-248bp_to_ENST00000381405_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11082 | |EntrezGene=11082 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3466 | |HGNC=3466 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQ30 | |UniProt=Q9NQ30 | ||
|association_with_transcript=-248bp_to_ENST00000381405_5end | |||
|cluster_id=chr5:54281739..54281753,- | |||
|coexpression_cluster_id=C4506 | |||
|description=CAGE_peak_3_at_ESM1_5end | |||
|id=chr5:54281739..54281753,- | |||
|ontology_enrichment_celltype=CL:0000222!2.35e-35!119;CL:0002139!2.54e-21!24;CL:0000680!1.84e-20!57;CL:0000056!1.84e-20!57;CL:0000355!1.84e-20!57;CL:0000359!1.71e-19!32;CL:0000187!2.32e-18!54;CL:0000115!4.30e-18!35;CL:0000183!4.54e-18!59;CL:0000213!4.13e-17!57;CL:0000215!4.13e-17!57;CL:0000055!4.96e-17!180;CL:0000071!7.33e-16!18;CL:0002546!7.33e-16!18;CL:0000220!1.94e-15!246;CL:0000393!2.41e-15!60;CL:0000211!2.41e-15!60;CL:0000192!2.79e-15!42;CL:0000514!2.79e-15!42;CL:0002321!4.18e-15!248;CL:0002078!1.41e-13!44;CL:0002539!9.65e-10!10;CL:1000413!5.13e-08!9;CL:0002595!1.30e-07!5;CL:0000548!2.97e-07!679;CL:0000004!2.97e-07!679;CL:0000255!2.97e-07!679;CL:0000144!3.68e-07!625;CL:0002371!3.80e-07!591;CL:0000012!4.91e-07!682;CL:0005020!4.95e-07!6;CL:0002138!4.95e-07!6;CL:0005022!4.95e-07!6 | |||
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|ontology_enrichment_celltype_v019_2=CL:0000222,3.21e-31,121;CL:0000359,7.93e-31,32;CL:0000680,6.02e-24,58;CL:0000056,6.02e-24,58;CL:0000355,6.02e-24,58;CL:0000192,1.61e-23,43;CL:0000514,1.61e-23,43;CL:0000187,4.44e-22,55;CL:0000393,3.93e-19,61;CL:0000211,3.93e-19,61;CL:0002539,2.45e-16,10;CL:0002139,2.97e-16,24;CL:0000115,4.73e-16,36;CL:0002321,2.53e-12,250;CL:0002595,3.25e-12,5;CL:0000071,7.12e-12,18;CL:0002546,7.12e-12,18;CL:0002078,7.61e-12,45;CL:1000413,1.73e-10,9;CL:0000213,1.85e-10,58;CL:0000215,1.85e-10,58 | |||
|ontology_enrichment_development_v019=CL:0000514;1.45e-18;43!CL:0000355;4.79e-12;58!CL:0002546;8.29e-12;18!CL:0000222;2.99e-07;121 | |||
|ontology_enrichment_disease=DOID:2394!1.31e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:0060072;2.01e-10;4!DOID:0060084;3.61e-08;3!DOID:127;3.61e-08;3!DOID:2394;9.17e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:0060072,2.09e-10,4;DOID:0060084,3.76e-08,3;DOID:127,3.76e-08,3;DOID:2394,7.15e-07,14 | |||
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| ||
|short_description=p3@ESM1 | |||
}} | }} |
Latest revision as of 03:48, 18 September 2015
Short description: | p3@ESM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ESM1_5end |
Coexpression cluster: | C4506_mesothelioma_schwannoma_Smooth_thyroid_leiomyoma_osteosarcoma_fibrous |
Association with transcript: | -248bp_to_ENST00000381405_5end |
EntrezGene: | ESM1 |
HGNC: | 3466 |
UniProt: | Q9NQ30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.21e-31 | 121 |
vascular associated smooth muscle cell | 7.93e-31 | 32 |
muscle precursor cell | 6.02e-24 | 58 |
myoblast | 6.02e-24 | 58 |
multi-potent skeletal muscle stem cell | 6.02e-24 | 58 |
smooth muscle cell | 1.61e-23 | 43 |
smooth muscle myoblast | 1.61e-23 | 43 |
muscle cell | 4.44e-22 | 55 |
electrically responsive cell | 3.93e-19 | 61 |
electrically active cell | 3.93e-19 | 61 |
aortic smooth muscle cell | 2.45e-16 | 10 |
endothelial cell of vascular tree | 2.97e-16 | 24 |
endothelial cell | 4.73e-16 | 36 |
embryonic cell | 2.53e-12 | 250 |
smooth muscle cell of the subclavian artery | 3.25e-12 | 5 |
blood vessel endothelial cell | 7.12e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.12e-12 | 18 |
meso-epithelial cell | 7.61e-12 | 45 |
endothelial cell of artery | 1.73e-10 | 9 |
lining cell | 1.85e-10 | 58 |
barrier cell | 1.85e-10 | 58 |
Ontology term | p-value | n |
---|---|---|
benign neoplasm | 2.09e-10 | 4 |
cell type benign neoplasm | 3.76e-08 | 3 |
leiomyoma | 3.76e-08 | 3 |
ovarian cancer | 7.15e-07 | 14 |