FFCP PHASE1:Hg19::chr19:42401139..42401159,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:42401139..42401159,+
|short_description=p15@ARHGEF1
|description=CAGE_peak_15_at_ARHGEF1_5end
|association_with_transcript=46bp_to_uc002osd.2_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9138 | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=681 | |HGNC=681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=46bp_to_uc002osd.2_5end | |||
|cluster_id=chr19:42401139..42401159,+ | |||
|description=CAGE_peak_15_at_ARHGEF1_5end | |||
|id=chr19:42401139..42401159,+ | |||
|ontology_enrichment_celltype=CL:0000542!7.35e-11!53;CL:0000051!7.35e-11!53;CL:0000838!2.04e-10!52;CL:0000791!3.59e-08!18;CL:0000789!3.59e-08!18;CL:0002420!3.59e-08!18;CL:0002419!3.59e-08!18;CL:0000790!3.59e-08!18;CL:0000084!5.45e-08!25;CL:0000827!5.45e-08!25;CL:0002087!5.27e-07!119;CL:0000037!6.52e-07!172;CL:0000566!6.52e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000624;4.01e-20;6!CL:0000623;2.41e-15;3!CL:0000898;6.34e-15;3!CL:0000791;2.03e-12;18!CL:0000789;2.03e-12;18!CL:0002419;2.03e-12;18!CL:0000815;1.59e-10;2!CL:0000792;1.59e-10;2!CL:0002677;1.59e-10;2!CL:0000084;1.12e-08;25!CL:0000226;1.43e-07;3!CL:0000775;1.43e-07;3!CL:0000842;1.43e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.57e-19,6;CL:0000623,8.08e-16,3;CL:0000825,8.08e-16,3;CL:0000898,2.26e-14,3;CL:0000791,3.32e-12,18;CL:0000789,3.32e-12,18;CL:0002420,3.32e-12,18;CL:0002419,3.32e-12,18;CL:0000790,3.32e-12,18;CL:0000815,3.14e-10,2;CL:0000792,3.14e-10,2;CL:0002677,3.14e-10,2;CL:0000084,1.57e-08,25;CL:0000827,1.57e-08,25;CL:0000226,1.18e-07,3;CL:0000775,1.18e-07,3;CL:0000842,1.18e-07,3;CL:0000838,1.66e-07,52;CL:0000542,2.48e-07,53;CL:0000051,2.48e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;2.03e-12;18!UBERON:0006241;2.73e-07;3!UBERON:0003057;2.73e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.48e-10!115;UBERON:0001049!4.69e-09!57;UBERON:0005068!4.69e-09!57;UBERON:0006241!4.69e-09!57;UBERON:0007135!4.69e-09!57;UBERON:0003080!2.62e-08!42;UBERON:0002780!8.17e-08!41;UBERON:0001890!8.17e-08!41;UBERON:0006240!8.17e-08!41;UBERON:0002020!9.84e-08!34;UBERON:0003528!9.84e-08!34;UBERON:0001893!2.04e-07!34;UBERON:0002791!2.20e-07!33;UBERON:0002616!9.69e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.05e-11;15!UBERON:0000179;2.05e-11;15!UBERON:0000463;2.05e-11;15!UBERON:0002771;1.59e-10;2!UBERON:0002390;1.24e-08;32!UBERON:0002240;2.73e-07;3!UBERON:0005174;2.73e-07;3!UBERON:0001137;2.73e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.51e-11,15;UBERON:0000179,1.51e-11,15;UBERON:0000463,1.51e-11,15;UBERON:0002771,1.53e-10,2;UBERON:0002240,5.31e-07,3;UBERON:0005174,5.31e-07,3;UBERON:0001137,5.31e-07,3 | |||
|phase1_expression=0,0.642301571672949,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0.687720651731561,0.164201178899891,0.314843125254717,0,0,0,0,0,0,0.232401601740905,0.568676929949686,0,0,0.802177789880567,0.217010870715852,0.223915474239924,0,0,0,0,0,0.232429036905685,0.411167888021826,0.309706370895104,0,0.256160706529101,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0.56738522469114,0,0,0.521482918420201,0.434377689410233,0,0,0,0,0,0,0.336985893439485,0.450530678524519,0.16072558669708,0.285012743741249,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0,0.786839080455332,3.93010762749165,1.23360899399706,0.83593247695339,1.30368906653436,1.89379122293893,0,0.557052284425868,1.17842362989935,0.664601683750863,0,1.79327847615945,1.30059347559878,1.80881695064044,1.38175008892924,0.579606171470105,0.889719378972363,0,2.09071047609954,0.906474741580529,1.14966148080576,0.68725489096526,1.51811815211702,0.318565414324097,0,0.950452044448374,0.451725357233318,0.639933055772092,0,0.710331756132051,0,0.80642697289893,1.60464117470104,2.31719046212478,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0.175669571386252,0.261958150995425,0,0,0,0,0.398873881556595,0.238490624305342,0,0.371457501329565,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0.732186172644509,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0.496971951695318,0,0.529636723252875,0.286836620748814,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0.149448680551801,0,0,0,0,0.245668634623536,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0.717558542755448,0,0,0.300091096084402,0,0.772921620136887,0,0.168776332241266,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0.330881918197182,0,0,0,0,0.38474715694639,0,0,0,0,0,0.982827216677626,0,0,0,0,0.329250856225877,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0.264145302039678,0.414656231081544,0.144119953416961,0,0.190493682876507,0,0,0,0.102827492703324,0.600686115687835,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0.112085143993527,1.77327684181734,2.37190332345469,1.66845947163673,0,0,0,0,1.27587750330633,1.49801404789436,2.99161459204025,0,0,0,0,0.623912584592421,1.07057393278297,0.315404830067869,0.35142424497814,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0.82707210449155,1.50999940573032,2.45473382947922,0,0,0,0,0.306923946576125,0,0,0,0,0,0.308419387605311,0,0,0,0.116210378459959,0.120859449591622,0,0.184161977871793,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0.322260734604821,0,0.0852266274161009,0,0,0,0.638063562472921,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0.507447609232169,0,1.70894156152249,1.42939065274673,0.822724546172388,0.648473311192717,2.16012574895246,6.34500141035416,0,0,0,0.557409525377156,0.432807638929335,0.569134746787313,0.318852545457645,0,0,0.635020748171649,0,0,0.228234679033192,0.156679895773023,0,0,0.1605880751037,0.201799707191048,0.425846237690326,0,0,0,0.166849141711909,0.19538809540204,0.278406173895242,0,0.270455678475983,0.33307196799782,0,0.18714054040822,0,0,0.111443384277478,0,0,0,0,0,0.562677665642051,0,0.16480387422676,0.63337622438398,0.19924798825107,0.552567831062295,0,0.102268682502155,0.615424027305347,0,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0.520855522170466,0.174919999992391,0.724999575434793,0.1137934482855,0,0,0,0.291604613383254,0.347249989866585,0,0.723578631752448,0,0,0,0,0,0,0.153900517007594,0,0.23056390438806,0.269272933229316,0.869178975376065,0.31900115973192,0,0,0,0.31396051279005,0,0.225595660617181,0.19606253431774,0.167821586975843,0.189753732724185,0.158936578980379,0.210998064528027,0,0,0,0,0.0884575645033392,0.611030144933625,0,0.123563938946503,0.104421949505455,1.07841812769083,0,0.234264445725339,0.547364367646998,0,0.242780379534093,0,0,0.61214552326098,0.63186579628488,0,0,0,0,0,0,0,0.693373365065693,0,0.0979923974143777,0.174118413160805,0.17472666824203,0.343972064943233,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.0969890164884194,0.0882561266915003,0.225980740780532,0.411125773940253,0,0.0633107959558787,0.195551382734803,0,0,0.39961921916426,0,0,0,0,0.124252535565433,0.707082103850386,0,0,0,0.288950589901519,0,0.410716136675979,1.27746588066972,0,0,0,0.687481272035051,0.717873024576814,0.399358000997982,0,0,0.0671834724867263,0,0,0,0.0824158583811665,0.0674035438541849,0,0.254019996197353,0.795229689809303,0.408610218334727,0.321506296930038,0,0,0,0,0.182248669974074,0,0,0.104909176269996,0,0,0.191915197319445,1.42939065274673,0,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| ||
|short_description=p15@ARHGEF1 | |||
}} | }} |
Latest revision as of 07:15, 18 September 2015
Short description: | p15@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_ARHGEF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 46bp_to_uc002osd.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.57e-19 | 6 |
natural killer cell | 8.08e-16 | 3 |
pro-NK cell | 8.08e-16 | 3 |
naive T cell | 2.26e-14 | 3 |
mature alpha-beta T cell | 3.32e-12 | 18 |
alpha-beta T cell | 3.32e-12 | 18 |
immature T cell | 3.32e-12 | 18 |
mature T cell | 3.32e-12 | 18 |
immature alpha-beta T cell | 3.32e-12 | 18 |
regulatory T cell | 3.14e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.14e-10 | 2 |
naive regulatory T cell | 3.14e-10 | 2 |
T cell | 1.57e-08 | 25 |
pro-T cell | 1.57e-08 | 25 |
single nucleate cell | 1.18e-07 | 3 |
neutrophil | 1.18e-07 | 3 |
mononuclear cell | 1.18e-07 | 3 |
lymphoid lineage restricted progenitor cell | 1.66e-07 | 52 |
lymphocyte | 2.48e-07 | 53 |
common lymphoid progenitor | 2.48e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
blood | 1.51e-11 | 15 |
haemolymphatic fluid | 1.51e-11 | 15 |
organism substance | 1.51e-11 | 15 |
middle temporal gyrus | 1.53e-10 | 2 |
spinal cord | 5.31e-07 | 3 |
dorsal region element | 5.31e-07 | 3 |
dorsum | 5.31e-07 | 3 |