FFCP PHASE1:Hg19::chr6:33387868..33387920,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8831 | |EntrezGene=8831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11497 | |HGNC=11497 | ||
|TSSclassifier=strong | |||
|UniProt=Q96PV0 | |UniProt=Q96PV0 | ||
|association_with_transcript=-20bp_to_ENST00000418600_5end | |association_with_transcript=-20bp_to_ENST00000418600_5end | ||
|cluster_id=chr6:33387868..33387920,+ | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_SYNGAP1_5end | |description=CAGE_peak_1_at_SYNGAP1_5end | ||
|id=chr6:33387868..33387920,+ | |id=chr6:33387868..33387920,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.99e-08!180;CL:0000133!4.87e-07!59 | |ontology_enrichment_celltype=CL:0000055!4.99e-08!180;CL:0000133!4.87e-07!59 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,5.30e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.43e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.19e-33!82;UBERON:0000073!4.42e-33!94;UBERON:0001016!4.42e-33!94;UBERON:0005743!7.56e-33!86;UBERON:0001049!2.58e-28!57;UBERON:0005068!2.58e-28!57;UBERON:0006241!2.58e-28!57;UBERON:0007135!2.58e-28!57;UBERON:0000955!6.89e-28!69;UBERON:0006238!6.89e-28!69;UBERON:0002346!5.27e-26!90;UBERON:0002616!5.99e-26!59;UBERON:0003075!3.29e-25!86;UBERON:0007284!3.29e-25!86;UBERON:0007023!1.25e-24!115;UBERON:0003080!3.62e-23!42;UBERON:0002780!1.27e-22!41;UBERON:0001890!1.27e-22!41;UBERON:0006240!1.27e-22!41;UBERON:0000924!1.93e-21!173;UBERON:0006601!1.93e-21!173;UBERON:0003056!3.86e-21!61;UBERON:0004121!1.37e-20!169;UBERON:0000153!3.33e-19!129;UBERON:0007811!3.33e-19!129;UBERON:0002020!7.87e-19!34;UBERON:0003528!7.87e-19!34;UBERON:0001869!7.92e-19!32;UBERON:0001893!1.49e-18!34;UBERON:0000033!2.07e-18!123;UBERON:0002791!5.84e-18!33;UBERON:0002619!4.21e-16!22;UBERON:0000956!7.60e-15!25;UBERON:0000203!7.60e-15!25;UBERON:0001950!9.96e-15!20;UBERON:0000475!8.38e-09!365 | |ontology_enrichment_uberon=UBERON:0001017!4.19e-33!82;UBERON:0000073!4.42e-33!94;UBERON:0001016!4.42e-33!94;UBERON:0005743!7.56e-33!86;UBERON:0001049!2.58e-28!57;UBERON:0005068!2.58e-28!57;UBERON:0006241!2.58e-28!57;UBERON:0007135!2.58e-28!57;UBERON:0000955!6.89e-28!69;UBERON:0006238!6.89e-28!69;UBERON:0002346!5.27e-26!90;UBERON:0002616!5.99e-26!59;UBERON:0003075!3.29e-25!86;UBERON:0007284!3.29e-25!86;UBERON:0007023!1.25e-24!115;UBERON:0003080!3.62e-23!42;UBERON:0002780!1.27e-22!41;UBERON:0001890!1.27e-22!41;UBERON:0006240!1.27e-22!41;UBERON:0000924!1.93e-21!173;UBERON:0006601!1.93e-21!173;UBERON:0003056!3.86e-21!61;UBERON:0004121!1.37e-20!169;UBERON:0000153!3.33e-19!129;UBERON:0007811!3.33e-19!129;UBERON:0002020!7.87e-19!34;UBERON:0003528!7.87e-19!34;UBERON:0001869!7.92e-19!32;UBERON:0001893!1.49e-18!34;UBERON:0000033!2.07e-18!123;UBERON:0002791!5.84e-18!33;UBERON:0002619!4.21e-16!22;UBERON:0000956!7.60e-15!25;UBERON:0000203!7.60e-15!25;UBERON:0001950!9.96e-15!20;UBERON:0000475!8.38e-09!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.77e-18;32!UBERON:0002780;2.64e-17;41!UBERON:0001890;2.64e-17;41!UBERON:0003528;2.71e-17;34!UBERON:0002020;2.71e-17;34!UBERON:0002791;2.97e-17;32!UBERON:0001893;6.03e-17;34!UBERON:0002619;6.12e-17;22!UBERON:0000073;9.48e-16;53!UBERON:0002616;9.48e-16;53!UBERON:0000956;1.22e-15;25!UBERON:0000203;1.22e-15;25!UBERON:0001950;1.74e-15;20!UBERON:0001017;2.66e-13;75!UBERON:0000955;6.13e-13;68!UBERON:0001016;4.87e-12;83!UBERON:0007023;7.37e-07;114 | |||
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| ||
|short_description=p1@SYNGAP1 | |short_description=p1@SYNGAP1 | ||
}} | }} |
Latest revision as of 07:29, 18 September 2015
Short description: | p1@SYNGAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYNGAP1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -20bp_to_ENST00000418600_5end |
EntrezGene: | SYNGAP1 |
HGNC: | 11497 |
UniProt: | Q96PV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 5.30e-07 | 59 |