FFCP PHASE1:Hg19::chr12:4382917..4382935,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=894 | |EntrezGene=894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1583 | |HGNC=1583 | ||
|TSSclassifier=strong | |||
|UniProt=P30279 | |UniProt=P30279 | ||
|association_with_transcript=-2bp_to_ENST00000261254_5end | |association_with_transcript=-2bp_to_ENST00000261254_5end | ||
|cluster_id=chr12:4382917..4382935,+ | |||
|coexpression_cluster_id=C539 | |||
|description=CAGE_peak_1_at_CCND2_5end | |description=CAGE_peak_1_at_CCND2_5end | ||
|id=chr12:4382917..4382935,+ | |id=chr12:4382917..4382935,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.16e-19!115;UBERON:0001049!9.43e-13!57;UBERON:0005068!9.43e-13!57;UBERON:0006241!9.43e-13!57;UBERON:0007135!9.43e-13!57;UBERON:0001017!2.73e-12!82;UBERON:0003080!3.07e-12!42;UBERON:0002780!3.33e-12!41;UBERON:0001890!3.33e-12!41;UBERON:0006240!3.33e-12!41;UBERON:0005743!1.18e-11!86;UBERON:0001893!1.43e-11!34;UBERON:0001869!1.43e-11!32;UBERON:0002020!1.82e-11!34;UBERON:0003528!1.82e-11!34;UBERON:0002791!3.05e-11!33;UBERON:0002616!1.01e-10!59;UBERON:0000956!2.74e-10!25;UBERON:0000203!2.74e-10!25;UBERON:0002619!3.95e-10!22;UBERON:0003075!9.57e-10!86;UBERON:0007284!9.57e-10!86;UBERON:0001950!1.93e-09!20;UBERON:0003056!3.40e-09!61;UBERON:0002346!7.25e-09!90;UBERON:0000073!9.03e-09!94;UBERON:0001016!9.03e-09!94;UBERON:0000955!9.27e-09!69;UBERON:0006238!9.27e-09!69;UBERON:0004121!5.60e-08!169;UBERON:0000153!7.09e-08!129;UBERON:0007811!7.09e-08!129;UBERON:0000924!1.75e-07!173;UBERON:0006601!1.75e-07!173;UBERON:0000033!3.46e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.10e-10;32!UBERON:0002791;2.07e-10;32!UBERON:0000956;2.20e-10;25!UBERON:0000203;2.20e-10;25!UBERON:0002619;3.06e-10;22!UBERON:0003528;3.33e-10;34!UBERON:0002020;3.33e-10;34!UBERON:0001893;3.43e-10;34!UBERON:0001950;1.52e-09;20!UBERON:0002780;2.57e-09;41!UBERON:0001890;2.57e-09;41!UBERON:0000073;2.34e-07;53!UBERON:0002616;2.34e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.44e-19,114;UBERON:0001049,8.08e-13,56;UBERON:0005068,8.08e-13,56;UBERON:0006241,8.08e-13,56;UBERON:0007135,8.08e-13,56;UBERON:0001017,2.10e-12,81;UBERON:0002780,2.51e-12,41;UBERON:0001890,2.51e-12,41;UBERON:0003080,2.51e-12,41;UBERON:0006240,2.51e-12,41;UBERON:0000073,5.96e-12,53;UBERON:0002616,5.96e-12,53;UBERON:0001893,1.09e-11,34;UBERON:0001869,1.10e-11,32;UBERON:0003528,1.40e-11,34;UBERON:0002020,1.40e-11,34;UBERON:0002791,2.21e-11,32;UBERON:0010371,8.17e-11,104;UBERON:0003075,1.35e-10,82;UBERON:0007284,1.35e-10,82;UBERON:0000956,2.18e-10,25;UBERON:0000203,2.18e-10,25;UBERON:0002619,3.15e-10,22;UBERON:0001950,1.56e-09,20;UBERON:0001016,1.79e-09,89;UBERON:0002346,1.89e-09,86;UBERON:0003056,4.60e-09,61;UBERON:0000955,7.99e-09,68;UBERON:0006238,7.99e-09,68;UBERON:0004121,3.03e-08,171;UBERON:0000924,3.03e-08,171;UBERON:0006601,3.03e-08,171;UBERON:0010314,7.81e-07,132 | |||
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| ||
|short_description=p1@CCND2 | |short_description=p1@CCND2 | ||
}} | }} |
Latest revision as of 08:31, 18 September 2015
Short description: | p1@CCND2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCND2_5end |
Coexpression cluster: | C539_teratocarcinoma_diffuse_Gingival_Placental_lymphangiectasia_mycosis_Sebocyte |
Association with transcript: | -2bp_to_ENST00000261254_5end |
EntrezGene: | CCND2 |
HGNC: | 1583 |
UniProt: | P30279 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 7.44e-19 | 114 |
neural tube | 8.08e-13 | 56 |
neural rod | 8.08e-13 | 56 |
future spinal cord | 8.08e-13 | 56 |
neural keel | 8.08e-13 | 56 |
central nervous system | 2.10e-12 | 81 |
regional part of forebrain | 2.51e-12 | 41 |
forebrain | 2.51e-12 | 41 |
anterior neural tube | 2.51e-12 | 41 |
future forebrain | 2.51e-12 | 41 |
regional part of nervous system | 5.96e-12 | 53 |
regional part of brain | 5.96e-12 | 53 |
telencephalon | 1.09e-11 | 34 |
cerebral hemisphere | 1.10e-11 | 32 |
brain grey matter | 1.40e-11 | 34 |
gray matter | 1.40e-11 | 34 |
regional part of telencephalon | 2.21e-11 | 32 |
ecto-epithelium | 8.17e-11 | 104 |
neural plate | 1.35e-10 | 82 |
presumptive neural plate | 1.35e-10 | 82 |
cerebral cortex | 2.18e-10 | 25 |
pallium | 2.18e-10 | 25 |
regional part of cerebral cortex | 3.15e-10 | 22 |
neocortex | 1.56e-09 | 20 |
nervous system | 1.79e-09 | 89 |
neurectoderm | 1.89e-09 | 86 |
pre-chordal neural plate | 4.60e-09 | 61 |
brain | 7.99e-09 | 68 |
future brain | 7.99e-09 | 68 |
ectoderm-derived structure | 3.03e-08 | 171 |
ectoderm | 3.03e-08 | 171 |
presumptive ectoderm | 3.03e-08 | 171 |
structure with developmental contribution from neural crest | 7.81e-07 | 132 |