FFCP PHASE1:Hg19::chr19:4279009..4279053,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56961 | |EntrezGene=56961 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |HGNC=30633 | ||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |UniProt=Q96IW2 | ||
|association_with_transcript=411bp_to_ENST00000221852,ENST00000543264,NM_020209,uc002lzw.2,uc010dtu.2_5end | |association_with_transcript=411bp_to_ENST00000221852,ENST00000543264,NM_020209,uc002lzw.2,uc010dtu.2_5end | ||
|cluster_id=chr19:4279009..4279053,+ | |||
|coexpression_cluster_id=C2493 | |||
|description=CAGE_peak_2_at_SHD_5end | |description=CAGE_peak_2_at_SHD_5end | ||
|id=chr19:4279009..4279053,+ | |id=chr19:4279009..4279053,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.02e-08!5;CL:0000047!5.60e-08!8;CL:0000540!5.76e-08!6;CL:0000031!5.76e-08!6;CL:0000404!5.76e-08!6;CL:0002319!5.75e-07!25;CL:0000784!5.77e-07!3 | |ontology_enrichment_celltype=CL:0002322!1.02e-08!5;CL:0000047!5.60e-08!8;CL:0000540!5.76e-08!6;CL:0000031!5.76e-08!6;CL:0000404!5.76e-08!6;CL:0002319!5.75e-07!25;CL:0000784!5.77e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000784;4.63e-16;3!CL:0000540;2.77e-13;6!CL:0000404;2.77e-13;6!CL:0000123;1.49e-11;2!CL:0000242;1.49e-11;2!CL:0000333;2.38e-10;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,4.41e-16,3;CL:0000540,3.16e-13,6;CL:0000031,3.16e-13,6;CL:0000404,3.16e-13,6;CL:0000242,1.99e-11,2;CL:0000047,5.91e-10,8 | |||
|ontology_enrichment_development_v019=CL:0000031;2.77e-13;6!UBERON:0006601;4.59e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;1.08e-08;6!DOID:9119;7.48e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.08e-08,6;DOID:9119,7.49e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.78e-44!82;UBERON:0000073!4.63e-44!94;UBERON:0001016!4.63e-44!94;UBERON:0005743!1.61e-41!86;UBERON:0001049!4.29e-39!57;UBERON:0005068!4.29e-39!57;UBERON:0006241!4.29e-39!57;UBERON:0007135!4.29e-39!57;UBERON:0000955!2.51e-33!69;UBERON:0006238!2.51e-33!69;UBERON:0002616!3.78e-33!59;UBERON:0002780!4.06e-33!41;UBERON:0001890!4.06e-33!41;UBERON:0006240!4.06e-33!41;UBERON:0003080!4.10e-32!42;UBERON:0002020!4.00e-31!34;UBERON:0003528!4.00e-31!34;UBERON:0001869!5.51e-31!32;UBERON:0001893!5.56e-31!34;UBERON:0002791!2.20e-29!33;UBERON:0000956!3.65e-29!25;UBERON:0000203!3.65e-29!25;UBERON:0003075!5.66e-29!86;UBERON:0007284!5.66e-29!86;UBERON:0002346!1.81e-28!90;UBERON:0001950!2.38e-28!20;UBERON:0002619!4.11e-28!22;UBERON:0003056!3.11e-22!61;UBERON:0000924!1.78e-21!173;UBERON:0006601!1.78e-21!173;UBERON:0004121!1.88e-21!169;UBERON:0007023!9.09e-16!115;UBERON:0000033!2.84e-15!123;UBERON:0000153!7.12e-15!129;UBERON:0007811!7.12e-15!129;UBERON:0000200!2.73e-11!6;UBERON:0001872!5.59e-10!5;UBERON:0002021!5.80e-10!5;UBERON:0003076!2.89e-08!15;UBERON:0003057!2.89e-08!15;UBERON:0001871!8.84e-08!7;UBERON:0000025!1.03e-07!194;UBERON:0000013!6.43e-07!5;UBERON:0002410!6.43e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.02e-26;20!UBERON:0002619;3.29e-24;22!UBERON:0000956;3.61e-21;25!UBERON:0000203;3.61e-21;25!UBERON:0001893;6.06e-17;34!UBERON:0001869;7.01e-17;32!UBERON:0002021;1.43e-16;5!UBERON:0001872;3.31e-16;5!UBERON:0003528;1.43e-15;34!UBERON:0002020;1.43e-15;34!UBERON:0002791;7.87e-14;32!UBERON:0002780;4.36e-12;41!UBERON:0001890;4.36e-12;41!UBERON:0000013;2.38e-10;5!UBERON:0002410;2.38e-10;5!UBERON:0001016;2.07e-08;83!UBERON:0001017;2.23e-08;75!UBERON:0000200;3.84e-08;6!UBERON:0000073;7.50e-08;53!UBERON:0002616;7.50e-08;53!UBERON:0000988;2.50e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.56e-28,89;UBERON:0001950,8.51e-27,20;UBERON:0002619,2.80e-24,22;UBERON:0001017,5.40e-24,81;UBERON:0000956,3.14e-21,25;UBERON:0000203,3.14e-21,25;UBERON:0001869,1.88e-19,32;UBERON:0001049,8.69e-19,56;UBERON:0005068,8.69e-19,56;UBERON:0006241,8.69e-19,56;UBERON:0007135,8.69e-19,56;UBERON:0001893,3.36e-18,34;UBERON:0003528,3.95e-18,34;UBERON:0002020,3.95e-18,34;UBERON:0000073,1.88e-17,53;UBERON:0002616,1.88e-17,53;UBERON:0002780,2.14e-17,41;UBERON:0001890,2.14e-17,41;UBERON:0003080,2.14e-17,41;UBERON:0006240,2.14e-17,41;UBERON:0002021,1.19e-16,5;UBERON:0001872,2.46e-16,5;UBERON:0002791,2.86e-16,32;UBERON:0004121,3.59e-15,171;UBERON:0000924,3.59e-15,171;UBERON:0006601,3.59e-15,171;UBERON:0000955,1.06e-14,68;UBERON:0006238,1.06e-14,68;UBERON:0003075,8.11e-12,82;UBERON:0007284,8.11e-12,82;UBERON:0010371,2.16e-11,104;UBERON:0002346,4.06e-11,86;UBERON:0003056,6.39e-11,61;UBERON:0000013,2.38e-10,5;UBERON:0002410,2.38e-10,5;UBERON:0007023,6.47e-09,114;UBERON:0011216,2.60e-08,223;UBERON:0000200,3.89e-08,6;UBERON:0000988,2.13e-07,3 | |||
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| ||
|short_description=p2@SHD | |short_description=p2@SHD | ||
}} | }} |
Latest revision as of 08:35, 18 September 2015
Short description: | p2@SHD |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SHD_5end |
Coexpression cluster: | C2493_neuroblastoma_acute_teratocarcinoma_small_merkel_rhabdomyosarcoma_occipital |
Association with transcript: | 411bp_to_ENST00000221852, ENST00000543264, NM_020209, uc002lzw.2, uc010dtu.2_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 4.41e-16 | 3 |
neuron | 3.16e-13 | 6 |
neuroblast | 3.16e-13 | 6 |
electrically signaling cell | 3.16e-13 | 6 |
Merkel cell | 1.99e-11 | 2 |
neuronal stem cell | 5.91e-10 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.08e-08 | 6 |
acute myeloid leukemia | 7.49e-07 | 1 |