FFCP PHASE1:Hg19::chr19:4279647..4279659,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56961 | |EntrezGene=56961 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |HGNC=30633 | ||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |UniProt=Q96IW2 | ||
|association_with_transcript=0bp_to_AK055673_5end | |||
|cluster_id=chr19:4279647..4279659,+ | |||
|coexpression_cluster_id=C102 | |||
|description=CAGE_peak_9_at_SHD_5end | |||
|id=chr19:4279647..4279659,+ | |||
|ontology_enrichment_celltype=CL:0000784!2.50e-11!3;CL:0000188!2.34e-09!9;CL:0000242!5.59e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000784;2.59e-12;3!CL:0000333;5.35e-08;5!CL:0000840;8.48e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,3.24e-12,3;CL:0000840,9.49e-07,5;CL:0001029,9.49e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;7.17e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,7.17e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.03e-29!57;UBERON:0005068!1.03e-29!57;UBERON:0006241!1.03e-29!57;UBERON:0007135!1.03e-29!57;UBERON:0000073!2.74e-29!94;UBERON:0001016!2.74e-29!94;UBERON:0001017!4.91e-28!82;UBERON:0005743!2.09e-26!86;UBERON:0002616!6.02e-26!59;UBERON:0002780!3.65e-24!41;UBERON:0001890!3.65e-24!41;UBERON:0006240!3.65e-24!41;UBERON:0003080!1.73e-23!42;UBERON:0001893!1.82e-23!34;UBERON:0000955!4.37e-23!69;UBERON:0006238!4.37e-23!69;UBERON:0001869!2.78e-22!32;UBERON:0002791!3.08e-21!33;UBERON:0003075!4.94e-21!86;UBERON:0007284!4.94e-21!86;UBERON:0002020!9.52e-21!34;UBERON:0003528!9.52e-21!34;UBERON:0001950!1.51e-20!20;UBERON:0000200!7.29e-20!6;UBERON:0002346!8.37e-20!90;UBERON:0002619!1.60e-18!22;UBERON:0000956!4.54e-16!25;UBERON:0000203!4.54e-16!25;UBERON:0007023!1.42e-15!115;UBERON:0004121!3.74e-15!169;UBERON:0003056!8.19e-15!61;UBERON:0000924!1.29e-14!173;UBERON:0006601!1.29e-14!173;UBERON:0000033!2.05e-10!123;UBERON:0002771!3.53e-10!3;UBERON:0000153!1.15e-09!129;UBERON:0007811!1.15e-09!129;UBERON:0001870!4.70e-08!2;UBERON:0001875!8.43e-08!2;UBERON:0006514!8.43e-08!2;UBERON:0000483!1.21e-07!309;UBERON:0000119!1.74e-07!312;UBERON:0003076!2.01e-07!15;UBERON:0003057!2.01e-07!15;UBERON:0002360!2.30e-07!2;UBERON:0000094!2.30e-07!2;UBERON:0007645!2.30e-07!2;UBERON:0002021!5.19e-07!5;UBERON:0000013!5.74e-07!5;UBERON:0002410!5.74e-07!5;UBERON:0002298!7.14e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002702;9.07e-18;2!UBERON:0001875;9.07e-18;2!UBERON:0006514;9.07e-18;2!UBERON:0001870;2.59e-12;3!UBERON:0002791;4.08e-10;32!UBERON:0001869;4.08e-10;32!UBERON:0000013;5.35e-08;5!UBERON:0002410;5.35e-08;5!UBERON:0002021;6.55e-08;5!UBERON:0003528;1.81e-07;34!UBERON:0002780;1.81e-07;41!UBERON:0002020;1.81e-07;34!UBERON:0001890;1.81e-07;41!UBERON:0001950;2.86e-07;20!UBERON:0001893;3.76e-07;34!UBERON:0000200;8.48e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002702,9.07e-18,2;UBERON:0001875,1.07e-17,2;UBERON:0006514,1.07e-17,2;UBERON:0001870,2.59e-12,3;UBERON:0002791,9.60e-10,32;UBERON:0001869,9.60e-10,32;UBERON:0003528,3.15e-09,34;UBERON:0002020,3.15e-09,34;UBERON:0001893,3.15e-09,34;UBERON:0000013,5.35e-08,5;UBERON:0002410,5.35e-08,5;UBERON:0002021,6.13e-08,5;UBERON:0002780,8.32e-08,41;UBERON:0001890,8.32e-08,41;UBERON:0003080,8.32e-08,41;UBERON:0006240,8.32e-08,41;UBERON:0001950,2.77e-07,20;UBERON:0000200,8.48e-07,6;UBERON:0002619,9.95e-07,22 | |||
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| ||
|short_description=p9@SHD | |||
}} | }} |
Latest revision as of 08:45, 18 September 2015
Short description: | p9@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SHD_5end |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | 0bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 3.24e-12 | 3 |
immature conventional dendritic cell | 9.49e-07 | 5 |
common dendritic progenitor | 9.49e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
middle frontal gyrus | 9.07e-18 | 2 |
globus pallidus | 1.07e-17 | 2 |
pallidum | 1.07e-17 | 2 |
frontal cortex | 2.59e-12 | 3 |
regional part of telencephalon | 9.60e-10 | 32 |
cerebral hemisphere | 9.60e-10 | 32 |
brain grey matter | 3.15e-09 | 34 |
gray matter | 3.15e-09 | 34 |
telencephalon | 3.15e-09 | 34 |
sympathetic nervous system | 5.35e-08 | 5 |
autonomic nervous system | 5.35e-08 | 5 |
occipital lobe | 6.13e-08 | 5 |
regional part of forebrain | 8.32e-08 | 41 |
forebrain | 8.32e-08 | 41 |
anterior neural tube | 8.32e-08 | 41 |
future forebrain | 8.32e-08 | 41 |
neocortex | 2.77e-07 | 20 |
gyrus | 8.48e-07 | 6 |
regional part of cerebral cortex | 9.95e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 7.17e-07 | 6 |