FFCP PHASE1:Hg19::chr19:4279661..4279707,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:4279661..4279707,+
|short_description=p3@SHD
|description=CAGE_peak_3_at_SHD_5end
|association_with_transcript=2bp_to_AK055673_5end
|EntrezGene=56961
|H...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56961 | |EntrezGene=56961 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |HGNC=30633 | ||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |UniProt=Q96IW2 | ||
|association_with_transcript=2bp_to_AK055673_5end | |||
|cluster_id=chr19:4279661..4279707,+ | |||
|coexpression_cluster_id=C102 | |||
|description=CAGE_peak_3_at_SHD_5end | |||
|id=chr19:4279661..4279707,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.89e-09!5;CL:0000188!8.47e-09!9;CL:0000784!9.33e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000333;2.92e-09;5!CL:0000784;6.27e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,6.47e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.38e-12;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;8.71e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.11e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.76e-39!57;UBERON:0005068!1.76e-39!57;UBERON:0006241!1.76e-39!57;UBERON:0007135!1.76e-39!57;UBERON:0003075!1.24e-34!86;UBERON:0007284!1.24e-34!86;UBERON:0000073!3.79e-34!94;UBERON:0001016!3.79e-34!94;UBERON:0001017!8.08e-34!82;UBERON:0005743!3.43e-33!86;UBERON:0002616!3.69e-33!59;UBERON:0002346!1.73e-32!90;UBERON:0000955!4.91e-32!69;UBERON:0006238!4.91e-32!69;UBERON:0002780!5.30e-30!41;UBERON:0001890!5.30e-30!41;UBERON:0006240!5.30e-30!41;UBERON:0001893!1.21e-29!34;UBERON:0002020!1.51e-29!34;UBERON:0003528!1.51e-29!34;UBERON:0001869!2.22e-29!32;UBERON:0003080!4.28e-29!42;UBERON:0002791!5.56e-28!33;UBERON:0002619!1.72e-25!22;UBERON:0003056!2.35e-23!61;UBERON:0007023!2.45e-23!115;UBERON:0001950!1.63e-22!20;UBERON:0000956!6.83e-22!25;UBERON:0000203!6.83e-22!25;UBERON:0004121!3.24e-20!169;UBERON:0000924!2.13e-19!173;UBERON:0006601!2.13e-19!173;UBERON:0000033!6.96e-18!123;UBERON:0000153!1.78e-17!129;UBERON:0007811!1.78e-17!129;UBERON:0000200!5.44e-13!6;UBERON:0003076!2.68e-11!15;UBERON:0003057!2.68e-11!15;UBERON:0004733!3.28e-09!12;UBERON:0002028!3.28e-09!12;UBERON:0007277!3.28e-09!12;UBERON:0002308!4.65e-09!9;UBERON:0000125!4.65e-09!9;UBERON:0002298!1.37e-08!8;UBERON:0004732!2.22e-08!13;UBERON:0001872!2.56e-07!5;UBERON:0000483!2.79e-07!309;UBERON:0002021!2.91e-07!5;UBERON:0002771!3.13e-07!3;UBERON:0000119!4.44e-07!312;UBERON:0001896!7.10e-07!3;UBERON:0005290!7.10e-07!3;UBERON:0010096!7.10e-07!3;UBERON:0000025!7.59e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;7.70e-42;20!UBERON:0002619;6.30e-38;22!UBERON:0000956;3.46e-33;25!UBERON:0000203;3.46e-33;25!UBERON:0000200;1.06e-28;6!UBERON:0001869;4.93e-26;32!UBERON:0001893;3.41e-25;34!UBERON:0003528;3.13e-23;34!UBERON:0002020;3.13e-23;34!UBERON:0002791;3.32e-22;32!UBERON:0002780;4.72e-17;41!UBERON:0001890;4.72e-17;41!UBERON:0000073;1.14e-15;53!UBERON:0002616;1.14e-15;53!UBERON:0001872;1.34e-15;5!UBERON:0001870;8.78e-15;3!UBERON:0000955;4.06e-14;68!UBERON:0001017;1.80e-13;75!UBERON:0002298;1.19e-12;6!UBERON:0002771;1.17e-10;2!UBERON:0002702;1.17e-10;2!UBERON:0002021;9.32e-10;5!UBERON:0001016;9.58e-10;83!UBERON:0000013;2.92e-09;5!UBERON:0002410;2.92e-09;5!UBERON:0000988;3.77e-07;3!UBERON:0001896;3.77e-07;3!UBERON:0005290;3.77e-07;3!UBERON:0001871;9.94e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,6.34e-42,20;UBERON:0002619,5.27e-38,22;UBERON:0000956,2.96e-33,25;UBERON:0000203,2.96e-33,25;UBERON:0001049,6.14e-32,56;UBERON:0005068,6.14e-32,56;UBERON:0006241,6.14e-32,56;UBERON:0007135,6.14e-32,56;UBERON:0001016,1.22e-31,89;UBERON:0000073,1.38e-30,53;UBERON:0002616,1.38e-30,53;UBERON:0001869,2.00e-29,32;UBERON:0000200,1.99e-28,6;UBERON:0000955,8.50e-28,68;UBERON:0006238,8.50e-28,68;UBERON:0003528,1.29e-27,34;UBERON:0002020,1.29e-27,34;UBERON:0001893,1.51e-27,34;UBERON:0001017,1.53e-27,81;UBERON:0002791,1.57e-25,32;UBERON:0002780,1.65e-25,41;UBERON:0001890,1.65e-25,41;UBERON:0003080,1.65e-25,41;UBERON:0006240,1.65e-25,41;UBERON:0003075,2.18e-20,82;UBERON:0007284,2.18e-20,82;UBERON:0002346,3.18e-19,86;UBERON:0007023,1.83e-18,114;UBERON:0010371,7.11e-17,104;UBERON:0003056,4.25e-16,61;UBERON:0001872,1.22e-15,5;UBERON:0004121,3.41e-15,171;UBERON:0000924,3.41e-15,171;UBERON:0006601,3.41e-15,171;UBERON:0001870,5.75e-15,3;UBERON:0002298,9.93e-13,6;UBERON:0010314,3.72e-12,132;UBERON:0002702,1.12e-10,2;UBERON:0002771,1.64e-10,2;UBERON:0011216,4.13e-10,223;UBERON:0002021,8.68e-10,5;UBERON:0000013,3.92e-09,5;UBERON:0002410,3.92e-09,5;UBERON:0003076,1.17e-07,15;UBERON:0003057,1.17e-07,15;UBERON:0000988,2.99e-07,3;UBERON:0001896,3.95e-07,3;UBERON:0005290,3.95e-07,3;UBERON:0010096,3.95e-07,3;UBERON:0000025,6.04e-07,192 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.523916301990851,0,0,0,0,0,1.43094374583205,1.14398982156026,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.397589304964456,0.232387885739037,0.414644220061482,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71571711905428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06337790121334,0.154048617114644,0.15350367472613,0.275673144969061,0,0.145016693914229,0.255679882248303,1.33548053470106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,1.99843180798692,0,0,0,0.121360521749513,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.84666373047609,1.66982576691332,0,0,0,0,0,0,0,3.79217710565611,0,0.173624994933292,0.885741385813839,0,0,0.331737779793674,0.295547618953547,2.63262476584767,0,0,0,0,0,0.179515288819544,0.760531603454056,0,0,0,0,0.470940769185074,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,1.1713222286267,0,0,0,0,0,0,0,0,0.103688191397247,0.664653872707185,0,0.313932918407225,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,1.7727022867646,4.88878456837007,0,0,0,0.144090417154106,0.114536596165916,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0.160753148465019,0.412618309791701,0,0,0,1.03274246318642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45637617086946,0.13223260174269,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,2.65820453990096,2.07444650333337,2.253436752717,2.29363678276028,0.665574309221114,1.30402446176905,0,0,0,0,0,5.1516839638757,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35039341457942,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02315497042921,15.5267728411222,0,2.29340240203229,0,0,0,0,0,0,0,0,0,0.449604575675217,5.6678630530234,0.319267718114302,4.92279274177812,0,5.74005195453008,1.13032951942296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16120270778863,1.56215619722769,2.27355476151302,2.60004821795018,0,0,0,0,0,0,0,0,0,0,0,0,1.56330385846713,4.01213918733379,0,0,0,0.157115589916002,0,0.913158720509496,0,0,0.0714765441766563,0.632054446930906,2.44106993273063,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,3.780064728066,0,0,0,0,0,0.218559560503957,0,0,0,2.35570160537934,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,2.71965960763659,0.436350690340377,0,0,0,0,0,0,1.39368351112581,0.203977659483963,0,0,0.250707539292375,0.0757786982182394,0,0.829169439458779,0.20686599172379,0,0.23806443146374,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.523916301990851,0,0,0,0,0,1.43094374583205,1.14398982156026,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.397589304964456,0.232387885739037,0.414644220061482,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71571711905428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06337790121334,0.154048617114644,0.15350367472613,0.275673144969061,0,0.145016693914229,0.255679882248303,1.33548053470106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,1.99843180798692,0,0,0,0.121360521749513,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.84666373047609,1.66982576691332,0,0,0,0,0,0,0,3.79217710565611,0,0.173624994933292,0.885741385813839,0,0,0.331737779793674,0.295547618953547,2.63262476584767,0,0,0,0,0,0.179515288819544,0.760531603454056,0,0,0,0,0.470940769185074,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,1.1713222286267,0,0,0,0,0,0,0,0,0.103688191397247,0.664653872707185,0,0.313932918407225,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,1.7727022867646,4.88878456837007,0,0,0,0.144090417154106,0.114536596165916,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0.160753148465019,0.412618309791701,0,0,0,1.03274246318642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45637617086946,0.13223260174269,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,2.65820453990096,2.07444650333337,2.253436752717,2.29363678276028,0.665574309221114,1.30402446176905,0,0,0,0,0,5.1516839638757,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35039341457942,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02315497042921,15.5267728411222,0,2.29340240203229,0,0,0,0,0,0,0,0,0,0.449604575675217,5.6678630530234,0.319267718114302,4.92279274177812,0,5.74005195453008,1.13032951942296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16120270778863,1.56215619722769,2.27355476151302,2.60004821795018,0,0,0,0,0,0,0,0,0,0,0,0,1.56330385846713,4.01213918733379,0,0,0,0.157115589916002,0,0.913158720509496,0,0,0.0714765441766563,0.632054446930906,2.44106993273063,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,3.780064728066,0,0,0,0,0,0.218559560503957,0,0,0,2.35570160537934,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,2.71965960763659,0.436350690340377,0,0,0,0,0,0,1.39368351112581,0.203977659483963,0,0,0.250707539292375,0.0757786982182394,0,0.829169439458779,0.20686599172379,0,0.23806443146374,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@SHD | |||
}} | }} |
Latest revision as of 08:45, 18 September 2015
Short description: | p3@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHD_5end |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | 2bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 6.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.11e-07 | 6 |