FFCP PHASE1:Hg19::chr3:47205548..47205638,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29072 | |EntrezGene=29072 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18420 | |HGNC=18420 | ||
|TSSclassifier=strong | |||
|UniProt=F2Z317,F5H340,Q9BYW2 | |UniProt=F2Z317,F5H340,Q9BYW2 | ||
|association_with_transcript=-81bp_to_ENST00000451092,ENST00000543224,NM_014159,uc003cqs.2,uc003cqv.2_5end | |association_with_transcript=-81bp_to_ENST00000451092,ENST00000543224,NM_014159,uc003cqs.2,uc003cqv.2_5end | ||
|cluster_id=chr3:47205548..47205638,- | |||
|coexpression_cluster_id=C4210 | |||
|description=CAGE_peak_1_at_SETD2_5end | |description=CAGE_peak_1_at_SETD2_5end | ||
|id=chr3:47205548..47205638,- | |id=chr3:47205548..47205638,- | ||
|ontology_enrichment_celltype=CL:0000037!7.13e-26!172;CL:0000566!7.13e-26!172;CL:0000738!1.19e-23!140;CL:0002032!6.84e-23!165;CL:0000837!6.84e-23!165;CL:0000988!6.87e-21!182;CL:0002031!2.98e-17!124;CL:0002087!7.23e-16!119;CL:0000838!1.68e-12!52;CL:0000542!3.85e-12!53;CL:0000051!3.85e-12!53;CL:0000763!2.40e-11!112;CL:0000049!2.40e-11!112;CL:0000791!2.23e-09!18;CL:0000789!2.23e-09!18;CL:0002420!2.23e-09!18;CL:0002419!2.23e-09!18;CL:0000790!2.23e-09!18;CL:0000766!7.42e-09!76;CL:0000557!7.50e-07!71;CL:0000625!8.41e-07!11 | |ontology_enrichment_celltype=CL:0000037!7.13e-26!172;CL:0000566!7.13e-26!172;CL:0000738!1.19e-23!140;CL:0002032!6.84e-23!165;CL:0000837!6.84e-23!165;CL:0000988!6.87e-21!182;CL:0002031!2.98e-17!124;CL:0002087!7.23e-16!119;CL:0000838!1.68e-12!52;CL:0000542!3.85e-12!53;CL:0000051!3.85e-12!53;CL:0000763!2.40e-11!112;CL:0000049!2.40e-11!112;CL:0000791!2.23e-09!18;CL:0000789!2.23e-09!18;CL:0002420!2.23e-09!18;CL:0002419!2.23e-09!18;CL:0000790!2.23e-09!18;CL:0000766!7.42e-09!76;CL:0000557!7.50e-07!71;CL:0000625!8.41e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.47e-09;18!CL:0000789;2.47e-09;18!CL:0002419;2.47e-09;18!CL:0000542;1.93e-07;53!CL:0000625;7.15e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.28e-25,168;CL:0000738,3.38e-23,136;CL:0002032,2.12e-22,161;CL:0000837,2.12e-22,161;CL:0000988,5.43e-21,177;CL:0002031,8.10e-17,120;CL:0002087,1.94e-15,115;CL:0000838,1.68e-12,52;CL:0000542,3.85e-12,53;CL:0000051,3.85e-12,53;CL:0000763,6.18e-11,108;CL:0000049,6.18e-11,108;CL:0000791,2.23e-09,18;CL:0000789,2.23e-09,18;CL:0002420,2.23e-09,18;CL:0002419,2.23e-09,18;CL:0000790,2.23e-09,18;CL:0000766,1.79e-08,72;CL:0000625,8.41e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;2.47e-09;18!CL:0000051;1.93e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.85e-16!115;UBERON:0002390!1.71e-08!102;UBERON:0003061!1.71e-08!102;UBERON:0001049!1.71e-08!57;UBERON:0005068!1.71e-08!57;UBERON:0006241!1.71e-08!57;UBERON:0007135!1.71e-08!57;UBERON:0003080!5.70e-08!42;UBERON:0002780!1.26e-07!41;UBERON:0001890!1.26e-07!41;UBERON:0006240!1.26e-07!41;UBERON:0002193!1.87e-07!112;UBERON:0002616!6.20e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.38e-16,114;UBERON:0001049,3.62e-08,56;UBERON:0005068,3.62e-08,56;UBERON:0006241,3.62e-08,56;UBERON:0007135,3.62e-08,56;UBERON:0002390,4.16e-08,98;UBERON:0003061,4.16e-08,98;UBERON:0002780,1.26e-07,41;UBERON:0001890,1.26e-07,41;UBERON:0003080,1.26e-07,41;UBERON:0006240,1.26e-07,41;UBERON:0000073,1.57e-07,53;UBERON:0002616,1.57e-07,53;UBERON:0002193,4.42e-07,108 | |||
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|short_description=p1@SETD2 | |short_description=p1@SETD2 | ||
}} | }} |
Latest revision as of 12:21, 18 September 2015
Short description: | p1@SETD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SETD2_5end |
Coexpression cluster: | C4210_granulocyte_Neutrophils_Dendritic_acute_CD4_Eosinophils_CD14 |
Association with transcript: | -81bp_to_ENST00000451092, ENST00000543224, NM_014159, uc003cqs.2, uc003cqv.2_5end |
EntrezGene: | SETD2 |
HGNC: | 18420 |
UniProt: | F2Z317F5H340Q9BYW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.28e-25 | 168 |
leukocyte | 3.38e-23 | 136 |
hematopoietic oligopotent progenitor cell | 2.12e-22 | 161 |
hematopoietic multipotent progenitor cell | 2.12e-22 | 161 |
hematopoietic cell | 5.43e-21 | 177 |
hematopoietic lineage restricted progenitor cell | 8.10e-17 | 120 |
nongranular leukocyte | 1.94e-15 | 115 |
lymphoid lineage restricted progenitor cell | 1.68e-12 | 52 |
lymphocyte | 3.85e-12 | 53 |
common lymphoid progenitor | 3.85e-12 | 53 |
myeloid cell | 6.18e-11 | 108 |
common myeloid progenitor | 6.18e-11 | 108 |
mature alpha-beta T cell | 2.23e-09 | 18 |
alpha-beta T cell | 2.23e-09 | 18 |
immature T cell | 2.23e-09 | 18 |
mature T cell | 2.23e-09 | 18 |
immature alpha-beta T cell | 2.23e-09 | 18 |
myeloid leukocyte | 1.79e-08 | 72 |
CD8-positive, alpha-beta T cell | 8.41e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.38e-16 | 114 |
neural tube | 3.62e-08 | 56 |
neural rod | 3.62e-08 | 56 |
future spinal cord | 3.62e-08 | 56 |
neural keel | 3.62e-08 | 56 |
hematopoietic system | 4.16e-08 | 98 |
blood island | 4.16e-08 | 98 |
regional part of forebrain | 1.26e-07 | 41 |
forebrain | 1.26e-07 | 41 |
anterior neural tube | 1.26e-07 | 41 |
future forebrain | 1.26e-07 | 41 |
regional part of nervous system | 1.57e-07 | 53 |
regional part of brain | 1.57e-07 | 53 |
hemolymphoid system | 4.42e-07 | 108 |