FFCP PHASE1:Hg19::chr12:48164812..48164829,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10411 | |EntrezGene=10411 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16629 | |HGNC=16629 | ||
|TSSclassifier=strong | |||
|UniProt=F8VRX1,E7EQC8 | |UniProt=F8VRX1,E7EQC8 | ||
|association_with_transcript=0bp_to_ENST00000397089,ENST00000548919,ENST00000549151,uc009zks.2_5end | |association_with_transcript=0bp_to_ENST00000397089,ENST00000548919,ENST00000549151,uc009zks.2_5end | ||
|cluster_id=chr12:48164812..48164829,- | |||
|coexpression_cluster_id=C2207 | |||
|description=CAGE_peak_14_at_RAPGEF3_5end | |description=CAGE_peak_14_at_RAPGEF3_5end | ||
|id=chr12:48164812..48164829,- | |id=chr12:48164812..48164829,- | ||
|ontology_enrichment_celltype=CL:0000575!1.25e-07!2 | |ontology_enrichment_celltype=CL:0000575!1.25e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000575;1.37e-31;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,1.00e-31,2 | |||
|ontology_enrichment_development_v019=UBERON:0003918;2.38e-14;10!UBERON:0007687;2.38e-14;10 | |||
|ontology_enrichment_disease=DOID:171!3.90e-07!10 | |ontology_enrichment_disease=DOID:171!3.90e-07!10 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.64e-10!90;UBERON:0003075!6.42e-09!86;UBERON:0007284!6.42e-09!86;UBERON:0007023!6.20e-08!115;UBERON:0000924!1.37e-07!173;UBERON:0006601!1.37e-07!173;UBERON:0002308!1.38e-07!9;UBERON:0000125!1.38e-07!9;UBERON:0000073!1.41e-07!94;UBERON:0001016!1.41e-07!94;UBERON:0000007!1.60e-07!2;UBERON:0001017!1.80e-07!82;UBERON:0000369!5.70e-07!4;UBERON:0002435!5.70e-07!4;UBERON:0000204!5.70e-07!4;UBERON:0010082!5.70e-07!4;UBERON:0005743!6.11e-07!86;UBERON:0002360!7.47e-07!2;UBERON:0000094!7.47e-07!2;UBERON:0007645!7.47e-07!2;UBERON:0003056!9.49e-07!61 | |ontology_enrichment_uberon=UBERON:0002346!1.64e-10!90;UBERON:0003075!6.42e-09!86;UBERON:0007284!6.42e-09!86;UBERON:0007023!6.20e-08!115;UBERON:0000924!1.37e-07!173;UBERON:0006601!1.37e-07!173;UBERON:0002308!1.38e-07!9;UBERON:0000125!1.38e-07!9;UBERON:0000073!1.41e-07!94;UBERON:0001016!1.41e-07!94;UBERON:0000007!1.60e-07!2;UBERON:0001017!1.80e-07!82;UBERON:0000369!5.70e-07!4;UBERON:0002435!5.70e-07!4;UBERON:0000204!5.70e-07!4;UBERON:0010082!5.70e-07!4;UBERON:0005743!6.11e-07!86;UBERON:0002360!7.47e-07!2;UBERON:0000094!7.47e-07!2;UBERON:0007645!7.47e-07!2;UBERON:0003056!9.49e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0000007;4.04e-31;2!UBERON:0000964;2.44e-16;4!UBERON:0010409;2.44e-16;4!UBERON:0003296;4.18e-16;4!UBERON:0010133;4.18e-16;4!UBERON:0001894;1.29e-09;7!UBERON:0010313;4.39e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,3.46e-31,2;UBERON:0000964,2.09e-16,4;UBERON:0010409,2.09e-16,4;UBERON:0004348,2.09e-16,4;UBERON:0005427,2.09e-16,4;UBERON:0003296,3.87e-16,4;UBERON:0010133,3.87e-16,4;UBERON:0001894,1.24e-09,7;UBERON:0006222,1.24e-09,7;UBERON:0010313,4.13e-07,10;UBERON:0002342,4.13e-07,10;UBERON:0005062,4.13e-07,10 | |||
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| ||
|short_description=p14@RAPGEF3 | |short_description=p14@RAPGEF3 | ||
}} | }} |
Latest revision as of 13:10, 18 September 2015
Short description: | p14@RAPGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_RAPGEF3_5end |
Coexpression cluster: | C2207_rhabdomyosarcoma_Corneal_bronchogenic_kidney_cervical_neuroepithelioma_neuroectodermal |
Association with transcript: | 0bp_to_ENST00000397089, ENST00000548919, ENST00000549151, uc009zks.2_5end |
EntrezGene: | RAPGEF3 |
HGNC: | 16629 |
UniProt: | F8VRX1E7EQC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 1.00e-31 | 2 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 3.46e-31 | 2 |
cornea | 2.09e-16 | 4 |
eye surface | 2.09e-16 | 4 |
optic eminence | 2.09e-16 | 4 |
corneal primordium | 2.09e-16 | 4 |
gland of diencephalon | 3.87e-16 | 4 |
neuroendocrine gland | 3.87e-16 | 4 |
diencephalon | 1.24e-09 | 7 |
future diencephalon | 1.24e-09 | 7 |
neural crest-derived structure | 4.13e-07 | 10 |
neural crest | 4.13e-07 | 10 |
neural fold | 4.13e-07 | 10 |